RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 GNG5P63218 68 aa13.16□□□□□ -0.3
PNKP-213ENST00000599543 C1orf134Q5TEV5 83 aa13.16□□□□□ -0.3
PNKP-213ENST00000599543 ZNF493Q6ZR52 646 aa13.16□□□□□ -0.3
PNKP-213ENST00000599543 Q8TAT8 98 aa13.16□□□□□ -0.3
PNKP-213ENST00000599543 MUC4Q99102 2169 aa13.15□□□□□ -0.3
PNKP-213ENST00000599543 CTXND1A0A1B0GTU2 59 aa13.15□□□□□ -0.3
PNKP-213ENST00000599543 RNASE8Q8TDE3 154 aaKnown RBP13.15□□□□□ -0.3
PNKP-213ENST00000599543 TMED6Q8WW62 240 aa13.15□□□□□ -0.3
PNKP-213ENST00000599543 C20orf144Q9BQM9 153 aa13.15□□□□□ -0.3
PNKP-213ENST00000599543 NOP10Q9NPE3 64 aaKnown RBP13.15□□□□□ -0.3
PNKP-213ENST00000599543 OTORQ9NRC9 128 aa13.15□□□□□ -0.3
PNKP-213ENST00000599543 A0A1B0GV50 99 aa13.14□□□□□ -0.31
PNKP-213ENST00000599543 CXorf1O96002 111 aa13.14□□□□□ -0.31
PNKP-213ENST00000599543 NKX2-5P52952 324 aaPredicted RBP13.14□□□□□ -0.31
PNKP-213ENST00000599543 FAM213BQ8TBF2 198 aa13.14□□□□□ -0.31
PNKP-213ENST00000599543 CSN1S1P47710 185 aa13.13□□□□□ -0.31
PNKP-213ENST00000599543 UBE2G2P60604 165 aa13.13□□□□□ -0.31
PNKP-213ENST00000599543 ZFP69Q49AA0 526 aa13.13□□□□□ -0.31
PNKP-213ENST00000599543 GFI1BQ5VTD9 330 aa13.13□□□□□ -0.31
PNKP-213ENST00000599543 LYPD1Q8N2G4 141 aa13.13□□□□□ -0.31
PNKP-213ENST00000599543 DNAH11Q96DT5 4516 aa13.12□□□□□ -0.31
PNKP-213ENST00000599543 MAP1LC3B2A6NCE7 125 aa13.12□□□□□ -0.31
PNKP-213ENST00000599543 DIRC3C9JPN6 131 aa13.12□□□□□ -0.31
PNKP-213ENST00000599543 SLC25A5P05141 298 aaKnown RBP13.12□□□□□ -0.31
PNKP-213ENST00000599543 SEC11BP0C7V7 166 aa13.12□□□□□ -0.31
PNKP-213ENST00000599543 TPT1P13693 172 aaKnown RBP13.12□□□□□ -0.31
PNKP-213ENST00000599543 LEPP41159 167 aa13.12□□□□□ -0.31
PNKP-213ENST00000599543 CCL18P55774 89 aa13.12□□□□□ -0.31
PNKP-213ENST00000599543 TMEM78Q5T7P6 136 aa13.12□□□□□ -0.31
PNKP-213ENST00000599543 CCDC28AQ8IWP9 274 aa13.12□□□□□ -0.31
PNKP-213ENST00000599543 C9orf62Q8N4C0 152 aa13.12□□□□□ -0.31
PNKP-213ENST00000599543 MAP1LC3BQ9GZQ8 125 aa13.12□□□□□ -0.31
PNKP-213ENST00000599543 TRAV12-3A0A0B4J271 114 aa13.11□□□□□ -0.31
PNKP-213ENST00000599543 BTN1A1Q13410 526 aa13.11□□□□□ -0.31
PNKP-213ENST00000599543 PRR9Q5T870 116 aa13.11□□□□□ -0.31
PNKP-213ENST00000599543 C9orf47Q6ZRZ4 202 aa13.11□□□□□ -0.31
PNKP-213ENST00000599543 GOLT1AQ6ZVE7 132 aa13.11□□□□□ -0.31
PNKP-213ENST00000599543 CMTM2Q8TAZ6 248 aa13.11□□□□□ -0.31
PNKP-213ENST00000599543 SGK494Q96LW2 274 aa13.11□□□□□ -0.31
PNKP-213ENST00000599543 TRAV8-1A0A0A6YYK1 113 aa13.1□□□□□ -0.31
PNKP-213ENST00000599543 NBDYA0A0U1RRE5 68 aa13.1□□□□□ -0.31
PNKP-213ENST00000599543 GGTLC3B5MD39 225 aa13.1□□□□□ -0.31
PNKP-213ENST00000599543 SUMO1P63165 101 aaKnown RBP13.1□□□□□ -0.31
PNKP-213ENST00000599543 Q6ZQT7 251 aa13.1□□□□□ -0.31
PNKP-213ENST00000599543 ZNRF2Q8NHG8 242 aa13.1□□□□□ -0.31
PNKP-213ENST00000599543 SUN5Q8TC36 379 aa13.1□□□□□ -0.31
PNKP-213ENST00000599543 LINC00477Q96M19 166 aa13.1□□□□□ -0.31
PNKP-213ENST00000599543 TMEM167BQ9NRX6 74 aa13.1□□□□□ -0.31
PNKP-213ENST00000599543 SNURFLB1AK76 121 aa13.09□□□□□ -0.31
PNKP-213ENST00000599543 RNASE4P34096 147 aaKnown RBP13.09□□□□□ -0.31
PNKP-213ENST00000599543 ZNF138P52744 262 aa13.09□□□□□ -0.31
PNKP-213ENST00000599543 EIF5AP63241 154 aaKnown RBP13.09□□□□□ -0.31
PNKP-213ENST00000599543 OR5I1Q13606 314 aa13.09□□□□□ -0.31
PNKP-213ENST00000599543 FAM74A1Q5RGS3 127 aa13.09□□□□□ -0.31
PNKP-213ENST00000599543 STOML3Q8TAV4 291 aa13.09□□□□□ -0.31
PNKP-213ENST00000599543 FAM19A4Q96LR4 140 aa13.09□□□□□ -0.31
PNKP-213ENST00000599543 ODF3Q96PU9 254 aa13.09□□□□□ -0.31
PNKP-213ENST00000599543 ZNF492Q9P255 531 aa13.09□□□□□ -0.31
PNKP-213ENST00000599543 DYNC1H1Q14204 4646 aaKnown RBP13.08□□□□□ -0.31
PNKP-213ENST00000599543 ZFAND2AQ8N6M9 145 aa13.08□□□□□ -0.32
PNKP-213ENST00000599543 RXFP4Q8TDU9 374 aa13.08□□□□□ -0.32
PNKP-213ENST00000599543 SFT2D1Q8WV19 159 aa13.08□□□□□ -0.32
PNKP-213ENST00000599543 BOLA1Q9Y3E2 137 aa13.08□□□□□ -0.32
PNKP-213ENST00000599543 LINC00588Q9Y4M8 146 aa13.08□□□□□ -0.32
PNKP-213ENST00000599543 TRAV26-1A0A087WT03 109 aa13.07□□□□□ -0.32
PNKP-213ENST00000599543 C7orf71A4D174 169 aa13.07□□□□□ -0.32
PNKP-213ENST00000599543 ZNF575Q86XF7 245 aa13.07□□□□□ -0.32
PNKP-213ENST00000599543 C6orf223Q8N319 242 aa13.07□□□□□ -0.32
PNKP-213ENST00000599543 GAGE12BA1L429 117 aa13.06□□□□□ -0.32
PNKP-213ENST00000599543 UMAD1C9J7I0 102 aa13.06□□□□□ -0.32
PNKP-213ENST00000599543 GAGE7O76087 117 aa13.06□□□□□ -0.32
PNKP-213ENST00000599543 GPX1P07203 203 aa13.06□□□□□ -0.32
PNKP-213ENST00000599543 GAGE12FP0CL80 117 aa13.06□□□□□ -0.32
PNKP-213ENST00000599543 GAGE12GP0CL81 117 aa13.06□□□□□ -0.32
PNKP-213ENST00000599543 GAGE12IP0CL82 117 aa13.06□□□□□ -0.32
PNKP-213ENST00000599543 SLC51BQ86UW2 128 aa13.06□□□□□ -0.32
PNKP-213ENST00000599543 LINC00612Q8N6U2 182 aa13.06□□□□□ -0.32
PNKP-213ENST00000599543 PYGO2Q9BRQ0 406 aa13.06□□□□□ -0.32
PNKP-213ENST00000599543 RBAKDNA6NC62 111 aa13.05□□□□□ -0.32
PNKP-213ENST00000599543 FAM74A7A6NL05 159 aa13.05□□□□□ -0.32
PNKP-213ENST00000599543 KLLNB2CW77 178 aa13.05□□□□□ -0.32
PNKP-213ENST00000599543 F6UZH7 168 aa13.05□□□□□ -0.32
PNKP-213ENST00000599543 CRISP2P16562 243 aa13.05□□□□□ -0.32
PNKP-213ENST00000599543 C5orf17Q8NAS9 161 aa13.05□□□□□ -0.32
PNKP-213ENST00000599543 EPDR1Q9UM22 224 aa13.05□□□□□ -0.32
PNKP-213ENST00000599543 TRAV34A0A0B4J273 112 aa13.04□□□□□ -0.32
PNKP-213ENST00000599543 A0A0J9YY99 117 aa13.04□□□□□ -0.32
PNKP-213ENST00000599543 IFNA7P01567 189 aa13.04□□□□□ -0.32
PNKP-213ENST00000599543 TCRAP04437 139 aa13.04□□□□□ -0.32
PNKP-213ENST00000599543 TNP2Q05952 138 aa13.04□□□□□ -0.32
PNKP-213ENST00000599543 MBD3L1Q8WWY6 194 aa13.04□□□□□ -0.32
PNKP-213ENST00000599543 TVP23CQ96ET8 276 aa13.04□□□□□ -0.32
PNKP-213ENST00000599543 LINC00479Q96M42 142 aa13.04□□□□□ -0.32
PNKP-213ENST00000599543 A0A1W2PRE2 83 aa13.03□□□□□ -0.32
PNKP-213ENST00000599543 H2AFB1P0C5Y9 115 aa13.03□□□□□ -0.32
PNKP-213ENST00000599543 HOXA5P20719 270 aa13.03□□□□□ -0.32
PNKP-213ENST00000599543 CCL20P78556 96 aa13.03□□□□□ -0.32
PNKP-213ENST00000599543 DAZ2Q13117 558 aaKnown RBP13.03□□□□□ -0.32
PNKP-213ENST00000599543 CST9LP1Q5W188 147 aa13.03□□□□□ -0.32
PNKP-213ENST00000599543 PAGE4O60829 102 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms