RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 MUC21A0A140T8X8 626 aa14.97□□□□□ -0.01
CLIP3-206ENST00000593074 MUC21Q5SSG8 566 aa14.97□□□□□ -0.01
CLIP3-206ENST00000593074 HIST2H2BCQ6DN03 193 aa14.97□□□□□ -0.01
CLIP3-206ENST00000593074 ZNF738Q8NE65 137 aa14.97□□□□□ -0.01
CLIP3-206ENST00000593074 PEF1Q9UBV8 284 aaKnown RBP14.97□□□□□ -0.01
CLIP3-206ENST00000593074 IGKV3D-20A0A0C4DH25 116 aa14.96□□□□□ -0.01
CLIP3-206ENST00000593074 IGHV7-4-1A0A0J9YVY3 117 aa14.96□□□□□ -0.01
CLIP3-206ENST00000593074 TMEM89A2RUT3 159 aa14.96□□□□□ -0.01
CLIP3-206ENST00000593074 D6R8Y8 96 aa14.96□□□□□ -0.01
CLIP3-206ENST00000593074 OR5AL1P0C617 328 aa14.96□□□□□ -0.01
CLIP3-206ENST00000593074 TWIST1Q15672 202 aa14.96□□□□□ -0.01
CLIP3-206ENST00000593074 LBHQ53QV2 105 aaPredicted RBP14.96□□□□□ -0.01
CLIP3-206ENST00000593074 MIEN1Q9BRT3 115 aa14.96□□□□□ -0.01
CLIP3-206ENST00000593074 C11orf21Q9P2W6 132 aa14.96□□□□□ -0.01
CLIP3-206ENST00000593074 CRXO43186 299 aaPredicted RBP14.96□□□□□ -0.02
CLIP3-206ENST00000593074 SSTP61278 116 aa14.96□□□□□ -0.02
CLIP3-206ENST00000593074 ORMDL3Q8N138 153 aa14.96□□□□□ -0.02
CLIP3-206ENST00000593074 TMEM70Q9BUB7 260 aa14.96□□□□□ -0.02
CLIP3-206ENST00000593074 CSN3P07498 182 aa14.95□□□□□ -0.02
CLIP3-206ENST00000593074 MRPL51Q4U2R6 128 aaKnown RBP14.95□□□□□ -0.02
CLIP3-206ENST00000593074 RHPN1-AS1Q9BWJ2 59 aa14.95□□□□□ -0.02
CLIP3-206ENST00000593074 TMEM191AQ9H0A3 160 aa14.95□□□□□ -0.02
CLIP3-206ENST00000593074 AP5S1Q9NUS5 200 aa14.95□□□□□ -0.02
CLIP3-206ENST00000593074 HOXA3O43365 443 aaPredicted RBP14.94□□□□□ -0.02
CLIP3-206ENST00000593074 LEPROTL1O95214 131 aa14.94□□□□□ -0.02
CLIP3-206ENST00000593074 TM4SF20Q53R12 229 aa14.94□□□□□ -0.02
CLIP3-206ENST00000593074 LURAP1LQ8IV03 231 aa14.94□□□□□ -0.02
CLIP3-206ENST00000593074 K7EMT4 169 aa14.94□□□□□ -0.02
CLIP3-206ENST00000593074 SPATA45Q537H7 98 aa14.94□□□□□ -0.02
CLIP3-206ENST00000593074 PRELID3AQ96N28 172 aa14.94□□□□□ -0.02
CLIP3-206ENST00000593074 ZANQ9Y493 2812 aa14.93□□□□□ -0.02
CLIP3-206ENST00000593074 OVOL1O14753 267 aa14.93□□□□□ -0.02
CLIP3-206ENST00000593074 SPATA12Q7Z6I5 190 aa14.93□□□□□ -0.02
CLIP3-206ENST00000593074 LINC00477Q96M19 166 aa14.93□□□□□ -0.02
CLIP3-206ENST00000593074 C2orf88Q9BSF0 95 aa14.93□□□□□ -0.02
CLIP3-206ENST00000593074 PRRC2AP48634 2157 aaKnown RBP14.93□□□□□ -0.02
CLIP3-206ENST00000593074 FOXE3Q13461 319 aa14.93□□□□□ -0.02
CLIP3-206ENST00000593074 LINC00173Q6ZV60 143 aa14.93□□□□□ -0.02
CLIP3-206ENST00000593074 WFDC11Q8NEX6 87 aa14.93□□□□□ -0.02
CLIP3-206ENST00000593074 MSRB1Q9NZV6 116 aa14.93□□□□□ -0.02
CLIP3-206ENST00000593074 SMPXQ9UHP9 88 aa14.93□□□□□ -0.02
CLIP3-206ENST00000593074 CHD6Q8TD26 2715 aa14.92□□□□□ -0.02
CLIP3-206ENST00000593074 FAM106AQ4KMX7 169 aa14.92□□□□□ -0.02
CLIP3-206ENST00000593074 C10orf99Q6UWK7 81 aa14.92□□□□□ -0.02
CLIP3-206ENST00000593074 FA2HQ7L5A8 372 aa14.92□□□□□ -0.02
CLIP3-206ENST00000593074 OR10J6PQ8NGY7 276 aa14.92□□□□□ -0.02
CLIP3-206ENST00000593074 SYS1-DBNDD2H3BUS1 97 aa14.91□□□□□ -0.02
CLIP3-206ENST00000593074 PRR9Q5T870 116 aa14.91□□□□□ -0.02
CLIP3-206ENST00000593074 PRSS3P2Q8NHM4 247 aa14.91□□□□□ -0.02
CLIP3-206ENST00000593074 EREGO14944 169 aa14.91□□□□□ -0.02
CLIP3-206ENST00000593074 MRPL52Q86TS9 123 aaKnown RBP14.91□□□□□ -0.02
CLIP3-206ENST00000593074 ATOH7Q8N100 152 aa14.91□□□□□ -0.02
CLIP3-206ENST00000593074 RNF185Q96GF1 192 aa14.91□□□□□ -0.02
CLIP3-206ENST00000593074 SIGLEC8Q9NYZ4 499 aa14.91□□□□□ -0.02
CLIP3-206ENST00000593074 IFI27P40305 119 aaPredicted RBP14.9□□□□□ -0.02
CLIP3-206ENST00000593074 RPL11P62913 178 aaKnown RBP14.9□□□□□ -0.02
CLIP3-206ENST00000593074 ZFAND2AQ8N6M9 145 aa14.9□□□□□ -0.02
CLIP3-206ENST00000593074 SNHG12Q9BXW3 62 aa14.9□□□□□ -0.02
CLIP3-206ENST00000593074 ZNF702PQ9H963 129 aa14.9□□□□□ -0.02
CLIP3-206ENST00000593074 HSPB8Q9UJY1 196 aa14.9□□□□□ -0.02
CLIP3-206ENST00000593074 KMT2BQ9UMN6 2715 aaPredicted RBP14.9□□□□□ -0.02
CLIP3-206ENST00000593074 APCP25054 2843 aa14.89□□□□□ -0.03
CLIP3-206ENST00000593074 ZNF705AQ6ZN79 300 aaPredicted RBP14.89□□□□□ -0.03
CLIP3-206ENST00000593074 DOPEY2Q9Y3R5 2298 aa14.89□□□□□ -0.03
CLIP3-206ENST00000593074 CKS2P33552 79 aa14.89□□□□□ -0.03
CLIP3-206ENST00000593074 FAM19A4Q96LR4 140 aa14.89□□□□□ -0.03
CLIP3-206ENST00000593074 UFC1Q9Y3C8 167 aa14.89□□□□□ -0.03
CLIP3-206ENST00000593074 TRAV9-2A0A087WT02 112 aa14.88□□□□□ -0.03
CLIP3-206ENST00000593074 Q6ZQT7 251 aa14.88□□□□□ -0.03
CLIP3-206ENST00000593074 TEX29Q8N6K0 151 aa14.88□□□□□ -0.03
CLIP3-206ENST00000593074 OR10AG1Q8NH19 301 aa14.88□□□□□ -0.03
CLIP3-206ENST00000593074 MYOZ3Q8TDC0 251 aa14.88□□□□□ -0.03
CLIP3-206ENST00000593074 CREBBPQ92793 2442 aa14.88□□□□□ -0.03
CLIP3-206ENST00000593074 C20orf202A1L168 122 aa14.88□□□□□ -0.03
CLIP3-206ENST00000593074 PPBPP02775 128 aa14.88□□□□□ -0.03
CLIP3-206ENST00000593074 IGLC3P0DOY3 106 aa14.88□□□□□ -0.03
CLIP3-206ENST00000593074 EDN2P20800 178 aa14.88□□□□□ -0.03
CLIP3-206ENST00000593074 KLHDC1Q8N7A1 406 aa14.88□□□□□ -0.03
CLIP3-206ENST00000593074 MAP1LC3CQ9BXW4 147 aa14.88□□□□□ -0.03
CLIP3-206ENST00000593074 TRBV7-9A0A0J9YWB2 115 aa14.87□□□□□ -0.03
CLIP3-206ENST00000593074 M0R143 59 aa14.87□□□□□ -0.03
CLIP3-206ENST00000593074 SNAI2O43623 268 aa14.87□□□□□ -0.03
CLIP3-206ENST00000593074 NPYP01303 97 aa14.87□□□□□ -0.03
CLIP3-206ENST00000593074 RPLP1P05386 114 aaKnown RBP14.87□□□□□ -0.03
CLIP3-206ENST00000593074 ELANEP08246 267 aa14.87□□□□□ -0.03
CLIP3-206ENST00000593074 MAJINQ3KP22 176 aa14.87□□□□□ -0.03
CLIP3-206ENST00000593074 OR8A1Q8NGG7 326 aa14.87□□□□□ -0.03
CLIP3-206ENST00000593074 A0A096LNJ9 63 aa14.86□□□□□ -0.03
CLIP3-206ENST00000593074 LOC389332A0A1B0GUA5 103 aa14.86□□□□□ -0.03
CLIP3-206ENST00000593074 SMKR1H3BMG3 65 aa14.86□□□□□ -0.03
CLIP3-206ENST00000593074 SAMD13Q5VXD3 122 aa14.86□□□□□ -0.03
CLIP3-206ENST00000593074 PET117Q6UWS5 81 aa14.86□□□□□ -0.03
CLIP3-206ENST00000593074 LAMTOR2Q9Y2Q5 125 aa14.86□□□□□ -0.03
CLIP3-206ENST00000593074 TENM4Q6N022 2769 aa14.86□□□□□ -0.03
CLIP3-206ENST00000593074 IGHV4-4A0A075B6R2 117 aa14.86□□□□□ -0.03
CLIP3-206ENST00000593074 NCR2O95944 276 aa14.86□□□□□ -0.03
CLIP3-206ENST00000593074 DEFB1P60022 68 aa14.86□□□□□ -0.03
CLIP3-206ENST00000593074 APRG1Q8IVJ8 170 aa14.86□□□□□ -0.03
CLIP3-206ENST00000593074 UQCR10Q9UDW1 63 aa14.86□□□□□ -0.03
CLIP3-206ENST00000593074 IGKV3-7A0A075B6H7 116 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms