RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 LYZL1Q6UWQ5 148 aa10.73□□□□□ -0.69
LIG3-205ENST00000585941 OR8A1Q8NGG7 326 aa10.73□□□□□ -0.69
LIG3-205ENST00000585941 ZNF418Q8TF45 676 aaPredicted RBP10.73□□□□□ -0.69
LIG3-205ENST00000585941 DCANP1Q8TF63 244 aa10.73□□□□□ -0.69
LIG3-205ENST00000585941 DPF1Q92782 380 aa10.73□□□□□ -0.69
LIG3-205ENST00000585941 TMSB15BA0A087X1C1 80 aa10.72□□□□□ -0.69
LIG3-205ENST00000585941 LOC102724200A0A096LPH7 203 aaPredicted RBP10.72□□□□□ -0.69
LIG3-205ENST00000585941 C2orf70A6NJV1 201 aa10.72□□□□□ -0.69
LIG3-205ENST00000585941 ZNF493Q6ZR52 646 aa10.72□□□□□ -0.69
LIG3-205ENST00000585941 C18orf32Q8TCD1 76 aa10.72□□□□□ -0.69
LIG3-205ENST00000585941 TPPP3Q9BW30 176 aa10.72□□□□□ -0.69
LIG3-205ENST00000585941 NIT2Q9NQR4 276 aa10.72□□□□□ -0.69
LIG3-205ENST00000585941 PEMTQ9UBM1 199 aa10.72□□□□□ -0.69
LIG3-205ENST00000585941 BAHCC1Q9P281 2608 aa10.71□□□□□ -0.69
LIG3-205ENST00000585941 A0A1B0GUS0 222 aa10.71□□□□□ -0.69
LIG3-205ENST00000585941 SNRPD3P62318 126 aaKnown RBP10.71□□□□□ -0.69
LIG3-205ENST00000585941 DMRTA1Q5VZB9 504 aa10.71□□□□□ -0.69
LIG3-205ENST00000585941 MS4A6AQ9H2W1 248 aa10.71□□□□□ -0.69
LIG3-205ENST00000585941 C16orf95Q9H693 158 aa10.71□□□□□ -0.69
LIG3-205ENST00000585941 ESM1Q9NQ30 184 aa10.71□□□□□ -0.69
LIG3-205ENST00000585941 IGKV3-7A0A075B6H7 116 aa10.7□□□□□ -0.7
LIG3-205ENST00000585941 LINC00310P59036 64 aa10.7□□□□□ -0.7
LIG3-205ENST00000585941 S100A12P80511 92 aa10.7□□□□□ -0.7
LIG3-205ENST00000585941 JOSD1Q15040 202 aaPredicted RBP10.7□□□□□ -0.7
LIG3-205ENST00000585941 KCNS1Q96KK3 526 aa10.7□□□□□ -0.7
LIG3-205ENST00000585941 CNFNQ9BYD5 112 aa10.7□□□□□ -0.7
LIG3-205ENST00000585941 SAMD10Q9BYL1 202 aa10.7□□□□□ -0.7
LIG3-205ENST00000585941 FASNP49327 2511 aaKnown RBP10.7□□□□□ -0.7
LIG3-205ENST00000585941 NUPR1O60356 82 aa10.69□□□□□ -0.7
LIG3-205ENST00000585941 SRD5A1P18405 259 aa10.69□□□□□ -0.7
LIG3-205ENST00000585941 TCTEX1D4Q5JR98 221 aa10.69□□□□□ -0.7
LIG3-205ENST00000585941 OR1N2Q8NGR9 330 aa10.69□□□□□ -0.7
LIG3-205ENST00000585941 FAM19A4Q96LR4 140 aa10.69□□□□□ -0.7
LIG3-205ENST00000585941 ACANP16112 2415 aa10.69□□□□□ -0.7
LIG3-205ENST00000585941 TRAV21A0A0B4J279 112 aa10.69□□□□□ -0.7
LIG3-205ENST00000585941 K7EQG2 157 aa10.69□□□□□ -0.7
LIG3-205ENST00000585941 EDN2P20800 178 aa10.69□□□□□ -0.7
LIG3-205ENST00000585941 KHDC1LQ5JSQ8 128 aa10.69□□□□□ -0.7
LIG3-205ENST00000585941 APRG1Q8IVJ8 170 aa10.69□□□□□ -0.7
LIG3-205ENST00000585941 OR11H1Q8NG94 326 aa10.69□□□□□ -0.7
LIG3-205ENST00000585941 JMJD8Q96S16 334 aa10.69□□□□□ -0.7
LIG3-205ENST00000585941 GPX1P07203 203 aa10.68□□□□□ -0.7
LIG3-205ENST00000585941 ZNF705DP0CH99 300 aaPredicted RBP10.68□□□□□ -0.7
LIG3-205ENST00000585941 ZNF705BP0CI00 300 aaPredicted RBP10.68□□□□□ -0.7
LIG3-205ENST00000585941 ZFAND2AQ8N6M9 145 aa10.68□□□□□ -0.7
LIG3-205ENST00000585941 KLHL30-AS1Q8NEE0 82 aa10.68□□□□□ -0.7
LIG3-205ENST00000585941 ODF3Q96PU9 254 aa10.68□□□□□ -0.7
LIG3-205ENST00000585941 TRAV2A0A0B4J234 112 aa10.67□□□□□ -0.7
LIG3-205ENST00000585941 IGKV3D-20A0A0C4DH25 116 aa10.67□□□□□ -0.7
LIG3-205ENST00000585941 SLURP1P55000 103 aa10.67□□□□□ -0.7
LIG3-205ENST00000585941 HILS1P60008 231 aa10.67□□□□□ -0.7
LIG3-205ENST00000585941 ZNF575Q86XF7 245 aa10.67□□□□□ -0.7
LIG3-205ENST00000585941 WFDC3Q8IUB2 231 aa10.67□□□□□ -0.7
LIG3-205ENST00000585941 OR9G4Q8NGQ1 327 aa10.67□□□□□ -0.7
LIG3-205ENST00000585941 ZNF469Q96JG9 3925 aaPredicted RBP10.67□□□□□ -0.7
LIG3-205ENST00000585941 HECTD1Q9ULT8 2610 aa10.67□□□□□ -0.7
LIG3-205ENST00000585941 ZNF324O75467 553 aaPredicted RBP10.66□□□□□ -0.7
LIG3-205ENST00000585941 TWIST1Q15672 202 aa10.66□□□□□ -0.7
LIG3-205ENST00000585941 FAM104BQ5XKR9 115 aa10.66□□□□□ -0.7
LIG3-205ENST00000585941 RCHY1Q96PM5 261 aa10.66□□□□□ -0.7
LIG3-205ENST00000585941 OR5AL1P0C617 328 aa10.66□□□□□ -0.7
LIG3-205ENST00000585941 NTF3P20783 257 aa10.66□□□□□ -0.7
LIG3-205ENST00000585941 AMTP48728 403 aa10.66□□□□□ -0.7
LIG3-205ENST00000585941 IQCJQ1A5X6 159 aa10.66□□□□□ -0.7
LIG3-205ENST00000585941 DEFB136Q30KP8 78 aa10.66□□□□□ -0.7
LIG3-205ENST00000585941 C18orf65Q6ZTR6 163 aa10.66□□□□□ -0.7
LIG3-205ENST00000585941 CHCHD1Q96BP2 118 aaKnown RBP10.66□□□□□ -0.7
LIG3-205ENST00000585941 TMEM191AQ9H0A3 160 aa10.66□□□□□ -0.7
LIG3-205ENST00000585941 C11orf21Q9P2W6 132 aa10.66□□□□□ -0.7
LIG3-205ENST00000585941 F6UB75 175 aa10.65□□□□□ -0.7
LIG3-205ENST00000585941 HSBP1O75506 76 aa10.65□□□□□ -0.7
LIG3-205ENST00000585941 DUSP14O95147 198 aaKnown RBP10.65□□□□□ -0.7
LIG3-205ENST00000585941 NDUFA7O95182 113 aa10.65□□□□□ -0.7
LIG3-205ENST00000585941 LEPP41159 167 aa10.65□□□□□ -0.7
LIG3-205ENST00000585941 CACNG7P62955 275 aa10.65□□□□□ -0.7
LIG3-205ENST00000585941 PSMG4Q5JS54 123 aa10.65□□□□□ -0.7
LIG3-205ENST00000585941 EBLN2Q6P2I7 272 aa10.65□□□□□ -0.7
LIG3-205ENST00000585941 PCP4L1A6NKN8 68 aa10.64□□□□□ -0.71
LIG3-205ENST00000585941 ZNF688P0C7X2 276 aa10.64□□□□□ -0.71
LIG3-205ENST00000585941 MED14OSP0DP75 135 aa10.64□□□□□ -0.71
LIG3-205ENST00000585941 TFPI2P48307 235 aa10.64□□□□□ -0.71
LIG3-205ENST00000585941 PRR9Q5T870 116 aa10.64□□□□□ -0.71
LIG3-205ENST00000585941 HIVEP2P31629 2446 aa10.64□□□□□ -0.71
LIG3-205ENST00000585941 IGHV4-4A0A075B6R2 117 aa10.63□□□□□ -0.71
LIG3-205ENST00000585941 A0A0J9YX75 114 aa10.63□□□□□ -0.71
LIG3-205ENST00000585941 KLLNB2CW77 178 aa10.63□□□□□ -0.71
LIG3-205ENST00000585941 SNAI2O43623 268 aa10.63□□□□□ -0.71
LIG3-205ENST00000585941 PMCHP20382 165 aa10.63□□□□□ -0.71
LIG3-205ENST00000585941 ADAMTSL5Q6ZMM2 481 aa10.63□□□□□ -0.71
LIG3-205ENST00000585941 SMIM15Q7Z3B0 74 aa10.63□□□□□ -0.71
LIG3-205ENST00000585941 NIT1Q86X76 327 aa10.63□□□□□ -0.71
LIG3-205ENST00000585941 LINC01006Q8NI28 216 aa10.63□□□□□ -0.71
LIG3-205ENST00000585941 TSSC4Q9Y5U2 329 aaPredicted RBP10.63□□□□□ -0.71
LIG3-205ENST00000585941 U3KQK5 164 aa10.63□□□□□ -0.71
LIG3-205ENST00000585941 LY6G6DO95868 133 aa10.63□□□□□ -0.71
LIG3-205ENST00000585941 PPBPP02775 128 aa10.63□□□□□ -0.71
LIG3-205ENST00000585941 RAB4AP20338 218 aa10.63□□□□□ -0.71
LIG3-205ENST00000585941 TSPOP30536 169 aa10.63□□□□□ -0.71
LIG3-205ENST00000585941 RNASE4P34096 147 aaKnown RBP10.63□□□□□ -0.71
LIG3-205ENST00000585941 DEFB1P60022 68 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms