RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 CCL19Q99731 98 aa0.69□□□□□ -2.3
SMCHD1-209ENST00000583441 SMIM7Q9BQ49 75 aa0.69□□□□□ -2.3
SMCHD1-209ENST00000583441 GINS2Q9Y248 185 aa0.69□□□□□ -2.3
SMCHD1-209ENST00000583441 NDUFAF1Q9Y375 327 aa0.69□□□□□ -2.3
SMCHD1-209ENST00000583441 ZNF469Q96JG9 3925 aaPredicted RBP0.69□□□□□ -2.3
SMCHD1-209ENST00000583441 PBRM1Q86U86 1689 aa0.69□□□□□ -2.3
SMCHD1-209ENST00000583441 ASCC3Q8N3C0 2202 aaKnown RBP0.68□□□□□ -2.3
SMCHD1-209ENST00000583441 TMEM189A5PLL7 270 aa0.68□□□□□ -2.3
SMCHD1-209ENST00000583441 NUPR2A6NF83 97 aa0.68□□□□□ -2.3
SMCHD1-209ENST00000583441 SNRPD3P62318 126 aaKnown RBP0.68□□□□□ -2.3
SMCHD1-209ENST00000583441 FAM135BQ49AJ0 1406 aa0.68□□□□□ -2.3
SMCHD1-209ENST00000583441 OR8J3Q8NGG0 315 aa0.68□□□□□ -2.3
SMCHD1-209ENST00000583441 BRK1Q8WUW1 75 aa0.68□□□□□ -2.3
SMCHD1-209ENST00000583441 C10orf95Q9H7T3 257 aa0.68□□□□□ -2.3
SMCHD1-209ENST00000583441 JPT1Q9UK76 154 aa0.68□□□□□ -2.3
SMCHD1-209ENST00000583441 MYH3P11055 1940 aa0.68□□□□□ -2.3
SMCHD1-209ENST00000583441 FGD6Q6ZV73 1430 aa0.67□□□□□ -2.3
SMCHD1-209ENST00000583441 PNMA8CA0A1B0GUJ8 204 aa0.67□□□□□ -2.3
SMCHD1-209ENST00000583441 J3KT08 172 aa0.67□□□□□ -2.3
SMCHD1-209ENST00000583441 EDF1O60869 148 aaKnown RBP0.67□□□□□ -2.3
SMCHD1-209ENST00000583441 NBEAP1P0C6P0 100 aa0.67□□□□□ -2.3
SMCHD1-209ENST00000583441 CKS2P33552 79 aa0.67□□□□□ -2.3
SMCHD1-209ENST00000583441 CAV3P56539 151 aa0.67□□□□□ -2.3
SMCHD1-209ENST00000583441 PSPHP78330 225 aa0.67□□□□□ -2.3
SMCHD1-209ENST00000583441 XAF1Q6GPH4 301 aa0.67□□□□□ -2.3
SMCHD1-209ENST00000583441 C10orf99Q6UWK7 81 aa0.67□□□□□ -2.3
SMCHD1-209ENST00000583441 KRTAP19-3Q7Z4W3 81 aa0.67□□□□□ -2.3
SMCHD1-209ENST00000583441 Q86TA4 180 aa0.67□□□□□ -2.3
SMCHD1-209ENST00000583441 MRPL35Q9NZE8 188 aaKnown RBP0.67□□□□□ -2.3
SMCHD1-209ENST00000583441 MED23Q9ULK4 1368 aa0.67□□□□□ -2.3
SMCHD1-209ENST00000583441 TET1Q8NFU7 2136 aa0.67□□□□□ -2.3
SMCHD1-209ENST00000583441 DSPPQ9NZW4 1301 aa0.66□□□□□ -2.3
SMCHD1-209ENST00000583441 CHD3Q12873 2000 aaKnown RBP0.66□□□□□ -2.3
SMCHD1-209ENST00000583441 M0QZK8 103 aa0.66□□□□□ -2.3
SMCHD1-209ENST00000583441 DPM2O94777 84 aa0.66□□□□□ -2.3
SMCHD1-209ENST00000583441 RHOHQ15669 191 aa0.66□□□□□ -2.3
SMCHD1-209ENST00000583441 TAC4Q86UU9 113 aa0.66□□□□□ -2.3
SMCHD1-209ENST00000583441 OR8I2Q8N0Y5 310 aa0.66□□□□□ -2.3
SMCHD1-209ENST00000583441 A0A1B0GX51 115 aa0.65□□□□□ -2.31
SMCHD1-209ENST00000583441 IGF2P01344 180 aa0.65□□□□□ -2.31
SMCHD1-209ENST00000583441 ZNF137PP52743 207 aa0.65□□□□□ -2.31
SMCHD1-209ENST00000583441 DR1Q01658 176 aa0.65□□□□□ -2.31
SMCHD1-209ENST00000583441 CSAG1Q6PB30 78 aa0.65□□□□□ -2.31
SMCHD1-209ENST00000583441 IDO2Q6ZQW0 420 aa0.65□□□□□ -2.31
SMCHD1-209ENST00000583441 DEFB132Q7Z7B7 95 aa0.65□□□□□ -2.31
SMCHD1-209ENST00000583441 PLAC4Q8WY50 150 aa0.65□□□□□ -2.31
SMCHD1-209ENST00000583441 MRPL36Q9P0J6 103 aaKnown RBP0.65□□□□□ -2.31
SMCHD1-209ENST00000583441 IGHV1-24A0A0C4DH33 117 aa0.64□□□□□ -2.31
SMCHD1-209ENST00000583441 A0A0D9SG42 100 aa0.64□□□□□ -2.31
SMCHD1-209ENST00000583441 TMEM30CPA0ZSE6 113 aa0.64□□□□□ -2.31
SMCHD1-209ENST00000583441 HIGD1CA8MV81 97 aa0.64□□□□□ -2.31
SMCHD1-209ENST00000583441 SLC25A5P05141 298 aaKnown RBP0.64□□□□□ -2.31
SMCHD1-209ENST00000583441 HIST1H1BP16401 226 aaKnown RBP0.64□□□□□ -2.31
SMCHD1-209ENST00000583441 EVI2AP22794 236 aa0.64□□□□□ -2.31
SMCHD1-209ENST00000583441 SPINT3P49223 89 aa0.64□□□□□ -2.31
SMCHD1-209ENST00000583441 QRFPP83859 136 aa0.64□□□□□ -2.31
SMCHD1-209ENST00000583441 SPINK13Q1W4C9 94 aa0.64□□□□□ -2.31
SMCHD1-209ENST00000583441 MAGOHBQ96A72 148 aaKnown RBP0.64□□□□□ -2.31
SMCHD1-209ENST00000583441 MRPL40Q9NQ50 206 aaKnown RBP0.64□□□□□ -2.31
SMCHD1-209ENST00000583441 AHNAKQ09666 5890 aaKnown RBP0.64□□□□□ -2.31
SMCHD1-209ENST00000583441 CITO14578 2027 aa0.64□□□□□ -2.31
SMCHD1-209ENST00000583441 OVOS2A0A0G2JMS6 1433 aa0.64□□□□□ -2.31
SMCHD1-209ENST00000583441 NUP210Q8TEM1 1887 aaPredicted RBP0.63□□□□□ -2.31
SMCHD1-209ENST00000583441 TRAV36DV7A0A075B6V5 113 aa0.63□□□□□ -2.31
SMCHD1-209ENST00000583441 BORCS7-ASMTA0A0B4J1R7 106 aa0.63□□□□□ -2.31
SMCHD1-209ENST00000583441 DEGS1O15121 323 aa0.63□□□□□ -2.31
SMCHD1-209ENST00000583441 TPST1O60507 370 aa0.63□□□□□ -2.31
SMCHD1-209ENST00000583441 SCTP09683 121 aa0.63□□□□□ -2.31
SMCHD1-209ENST00000583441 OTOSQ8NHW6 89 aa0.63□□□□□ -2.31
SMCHD1-209ENST00000583441 DMAC1Q96GE9 116 aa0.63□□□□□ -2.31
SMCHD1-209ENST00000583441 A0A0G2JMM0 328 aa0.62□□□□□ -2.31
SMCHD1-209ENST00000583441 KDELR1P24390 212 aa0.62□□□□□ -2.31
SMCHD1-209ENST00000583441 PCBD1P61457 104 aa0.62□□□□□ -2.31
SMCHD1-209ENST00000583441 HSD17B12Q53GQ0 312 aa0.62□□□□□ -2.31
SMCHD1-209ENST00000583441 C6orf52Q5T4I8 152 aa0.62□□□□□ -2.31
SMCHD1-209ENST00000583441 LYPD5Q6UWN5 251 aa0.62□□□□□ -2.31
SMCHD1-209ENST00000583441 CALML5Q9NZT1 146 aa0.62□□□□□ -2.31
SMCHD1-209ENST00000583441 METTL1Q9UBP6 276 aaKnown RBP0.62□□□□□ -2.31
SMCHD1-209ENST00000583441 ANKRD31Q8N7Z5 1873 aa0.62□□□□□ -2.31
SMCHD1-209ENST00000583441 SMIM24O75264 130 aa0.61□□□□□ -2.31
SMCHD1-209ENST00000583441 TCRAP04437 139 aa0.61□□□□□ -2.31
SMCHD1-209ENST00000583441 DBIP07108 87 aaKnown RBP0.61□□□□□ -2.31
SMCHD1-209ENST00000583441 PAEPP09466 180 aa0.61□□□□□ -2.31
SMCHD1-209ENST00000583441 OR8B8Q15620 311 aa0.61□□□□□ -2.31
SMCHD1-209ENST00000583441 TCTE3Q8IZS6 198 aa0.61□□□□□ -2.31
SMCHD1-209ENST00000583441 OR4S1Q8NGB4 309 aa0.61□□□□□ -2.31
SMCHD1-209ENST00000583441 PYDC1Q8WXC3 89 aa0.61□□□□□ -2.31
SMCHD1-209ENST00000583441 ATG5Q9H1Y0 275 aa0.61□□□□□ -2.31
SMCHD1-209ENST00000583441 COMMD3Q9UBI1 195 aa0.61□□□□□ -2.31
SMCHD1-209ENST00000583441 MUC4Q99102 2169 aa0.6□□□□□ -2.31
SMCHD1-209ENST00000583441 USP54Q70EL1 1684 aa0.6□□□□□ -2.31
SMCHD1-209ENST00000583441 CDC42EP2O14613 210 aa0.6□□□□□ -2.31
SMCHD1-209ENST00000583441 SDC4P31431 198 aa0.6□□□□□ -2.31
SMCHD1-209ENST00000583441 SPINK7P58062 85 aa0.6□□□□□ -2.31
SMCHD1-209ENST00000583441 PLGLB1Q02325 96 aa0.6□□□□□ -2.31
SMCHD1-209ENST00000583441 CCDC153Q494R4 210 aa0.6□□□□□ -2.31
SMCHD1-209ENST00000583441 GLYATL3Q5SZD4 288 aa0.6□□□□□ -2.31
SMCHD1-209ENST00000583441 AIF1LQ9BQI0 150 aa0.6□□□□□ -2.31
SMCHD1-209ENST00000583441 VPS25Q9BRG1 176 aa0.6□□□□□ -2.31
SMCHD1-209ENST00000583441 ASH1LQ9NR48 2969 aaKnown RBP0.59□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms