RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 RYR1P21817 5038 aa14.16□□□□□ -0.14
SHMT1-209ENST00000582653 C16orf90A8MZG2 172 aa14.15□□□□□ -0.14
SHMT1-209ENST00000582653 SPINK4O60575 86 aa14.15□□□□□ -0.14
SHMT1-209ENST00000582653 CSN1S1P47710 185 aa14.15□□□□□ -0.14
SHMT1-209ENST00000582653 MRPL16Q9NX20 251 aaKnown RBP14.15□□□□□ -0.14
SHMT1-209ENST00000582653 LRP1BQ9NZR2 4599 aa14.14□□□□□ -0.15
SHMT1-209ENST00000582653 HSPG2P98160 4391 aa14.14□□□□□ -0.15
SHMT1-209ENST00000582653 A0A096LPF7 62 aa14.14□□□□□ -0.15
SHMT1-209ENST00000582653 MUC21Q5SSG8 566 aa14.14□□□□□ -0.15
SHMT1-209ENST00000582653 IBA57Q5T440 356 aaKnown RBP14.14□□□□□ -0.15
SHMT1-209ENST00000582653 LYPD1Q8N2G4 141 aa14.14□□□□□ -0.15
SHMT1-209ENST00000582653 KRTAP1-5Q9BYS1 174 aa14.14□□□□□ -0.15
SHMT1-209ENST00000582653 IGHV3-53P01767 116 aa14.13□□□□□ -0.15
SHMT1-209ENST00000582653 KHDC3LQ587J8 217 aa14.13□□□□□ -0.15
SHMT1-209ENST00000582653 TTC32Q5I0X7 151 aa14.13□□□□□ -0.15
SHMT1-209ENST00000582653 HYLS1Q96M11 299 aa14.13□□□□□ -0.15
SHMT1-209ENST00000582653 ARPC5LQ9BPX5 153 aa14.13□□□□□ -0.15
SHMT1-209ENST00000582653 A0A1W2PPQ1 181 aa14.12□□□□□ -0.15
SHMT1-209ENST00000582653 RBAKDNA6NC62 111 aa14.12□□□□□ -0.15
SHMT1-209ENST00000582653 DIRC3C9JPN6 131 aa14.12□□□□□ -0.15
SHMT1-209ENST00000582653 CDK2AP2O75956 126 aa14.12□□□□□ -0.15
SHMT1-209ENST00000582653 TAS2R45P59539 299 aa14.12□□□□□ -0.15
SHMT1-209ENST00000582653 KRTAP4-5Q9BYR2 181 aa14.12□□□□□ -0.15
SHMT1-209ENST00000582653 MRPS16Q9Y3D3 137 aaKnown RBP14.12□□□□□ -0.15
SHMT1-209ENST00000582653 TRBV7-9A0A0J9YWB2 115 aa14.11□□□□□ -0.15
SHMT1-209ENST00000582653 BTF3P20290 206 aaKnown RBP14.11□□□□□ -0.15
SHMT1-209ENST00000582653 ZNF266Q14584 549 aa14.11□□□□□ -0.15
SHMT1-209ENST00000582653 ALG5Q9Y673 324 aa14.11□□□□□ -0.15
SHMT1-209ENST00000582653 PGPA6NDG6 321 aa14.1□□□□□ -0.15
SHMT1-209ENST00000582653 RAB2AP61019 212 aa14.1□□□□□ -0.15
SHMT1-209ENST00000582653 ST6GAL2Q96JF0 529 aa14.1□□□□□ -0.15
SHMT1-209ENST00000582653 MDFICQ9P1T7 246 aa14.1□□□□□ -0.15
SHMT1-209ENST00000582653 RPH3ALQ9UNE2 315 aa14.1□□□□□ -0.15
SHMT1-209ENST00000582653 A0A1W2PPV4 95 aa14.09□□□□□ -0.15
SHMT1-209ENST00000582653 HMGB3O15347 200 aaKnown RBP14.09□□□□□ -0.15
SHMT1-209ENST00000582653 ZNF415Q09FC8 603 aa14.09□□□□□ -0.15
SHMT1-209ENST00000582653 ACOT6Q3I5F7 207 aaPredicted RBP14.09□□□□□ -0.15
SHMT1-209ENST00000582653 PAX4O43316 350 aa14.08□□□□□ -0.16
SHMT1-209ENST00000582653 OTORQ9NRC9 128 aa14.08□□□□□ -0.16
SHMT1-209ENST00000582653 FHL2Q14192 279 aa14.07□□□□□ -0.16
SHMT1-209ENST00000582653 Q6AWC8 147 aa14.07□□□□□ -0.16
SHMT1-209ENST00000582653 SPATA12Q7Z6I5 190 aa14.07□□□□□ -0.16
SHMT1-209ENST00000582653 OR10G4Q8NGN3 311 aa14.07□□□□□ -0.16
SHMT1-209ENST00000582653 OR10G9Q8NGN4 311 aa14.07□□□□□ -0.16
SHMT1-209ENST00000582653 OR10G7Q8NGN6 311 aa14.07□□□□□ -0.16
SHMT1-209ENST00000582653 CMTM2Q8TAZ6 248 aa14.07□□□□□ -0.16
SHMT1-209ENST00000582653 C8orf49Q96NF6 230 aa14.07□□□□□ -0.16
SHMT1-209ENST00000582653 BATF3Q9NR55 127 aa14.07□□□□□ -0.16
SHMT1-209ENST00000582653 TMEM183BQ1AE95 376 aa14.06□□□□□ -0.16
SHMT1-209ENST00000582653 TMEM183AQ8IXX5 376 aa14.06□□□□□ -0.16
SHMT1-209ENST00000582653 PRO0255Q9UI72 69 aa14.06□□□□□ -0.16
SHMT1-209ENST00000582653 HHLA3Q9XRX5 114 aa14.06□□□□□ -0.16
SHMT1-209ENST00000582653 LENEPQ9Y5L5 61 aa14.06□□□□□ -0.16
SHMT1-209ENST00000582653 CRYBA4P53673 196 aa14.05□□□□□ -0.16
SHMT1-209ENST00000582653 FAM159AQ6UWV7 190 aa14.05□□□□□ -0.16
SHMT1-209ENST00000582653 PQLC2Q6ZP29 291 aa14.05□□□□□ -0.16
SHMT1-209ENST00000582653 GOLT1AQ6ZVE7 132 aa14.05□□□□□ -0.16
SHMT1-209ENST00000582653 NAGKQ9UJ70 344 aa14.05□□□□□ -0.16
SHMT1-209ENST00000582653 ICOSQ9Y6W8 199 aa14.05□□□□□ -0.16
SHMT1-209ENST00000582653 TRAV8-1A0A0A6YYK1 113 aa14.04□□□□□ -0.16
SHMT1-209ENST00000582653 SFTA3P0C7M3 94 aa14.04□□□□□ -0.16
SHMT1-209ENST00000582653 GNG5P63218 68 aa14.04□□□□□ -0.16
SHMT1-209ENST00000582653 SLAQ13239 276 aa14.04□□□□□ -0.16
SHMT1-209ENST00000582653 FAM74A1Q5RGS3 127 aa14.04□□□□□ -0.16
SHMT1-209ENST00000582653 HSD17B11Q8NBQ5 300 aa14.04□□□□□ -0.16
SHMT1-209ENST00000582653 TMED6Q8WW62 240 aa14.04□□□□□ -0.16
SHMT1-209ENST00000582653 TVP23CQ96ET8 276 aa14.04□□□□□ -0.16
SHMT1-209ENST00000582653 ABCA13Q86UQ4 5058 aa14.04□□□□□ -0.16
SHMT1-209ENST00000582653 DNAH5Q8TE73 4624 aa14.03□□□□□ -0.16
SHMT1-209ENST00000582653 GNRH2O43555 120 aa14.03□□□□□ -0.16
SHMT1-209ENST00000582653 Q5BKY6 102 aa14.03□□□□□ -0.16
SHMT1-209ENST00000582653 ZNF479Q96JC4 524 aa14.03□□□□□ -0.16
SHMT1-209ENST00000582653 SGK494Q96LW2 274 aa14.03□□□□□ -0.16
SHMT1-209ENST00000582653 TRGV4A0A0C4DH28 118 aa14.02□□□□□ -0.17
SHMT1-209ENST00000582653 F6UZH7 168 aa14.02□□□□□ -0.17
SHMT1-209ENST00000582653 SIVA1O15304 175 aa14.02□□□□□ -0.17
SHMT1-209ENST00000582653 ARL14EPLP0DKL9 152 aa14.02□□□□□ -0.17
SHMT1-209ENST00000582653 MAPKAPK5-AS1Q8N8E1 139 aa14.02□□□□□ -0.17
SHMT1-209ENST00000582653 MED28Q9H204 178 aa14.02□□□□□ -0.17
SHMT1-209ENST00000582653 TRGV11A0A075B6L2 103 aa14.01□□□□□ -0.17
SHMT1-209ENST00000582653 CDC34P49427 236 aaPredicted RBP14.01□□□□□ -0.17
SHMT1-209ENST00000582653 LYPD5Q6UWN5 251 aa14.01□□□□□ -0.17
SHMT1-209ENST00000582653 RASL10AQ92737 203 aa14.01□□□□□ -0.17
SHMT1-209ENST00000582653 AQP10Q96PS8 301 aa14.01□□□□□ -0.17
SHMT1-209ENST00000582653 SPXQ9BT56 116 aa14.01□□□□□ -0.17
SHMT1-209ENST00000582653 TREM1Q9NP99 234 aa14.01□□□□□ -0.17
SHMT1-209ENST00000582653 APOBP04114 4563 aaKnown RBP14□□□□□ -0.17
SHMT1-209ENST00000582653 NXPH4O95158 308 aa14□□□□□ -0.17
SHMT1-209ENST00000582653 PTTG1O95997 202 aa14□□□□□ -0.17
SHMT1-209ENST00000582653 ATP6V0CP27449 155 aa14□□□□□ -0.17
SHMT1-209ENST00000582653 KRTAP10-2P60368 255 aa14□□□□□ -0.17
SHMT1-209ENST00000582653 MRPL23Q16540 153 aaKnown RBP14□□□□□ -0.17
SHMT1-209ENST00000582653 TDRG1Q3Y452 100 aa14□□□□□ -0.17
SHMT1-209ENST00000582653 ARL6IP6Q8N6S5 226 aa14□□□□□ -0.17
SHMT1-209ENST00000582653 OR2G3Q8NGZ4 309 aa14□□□□□ -0.17
SHMT1-209ENST00000582653 RAB24Q969Q5 203 aa14□□□□□ -0.17
SHMT1-209ENST00000582653 IGHV3-16A0A0C4DH30 117 aa13.99□□□□□ -0.17
SHMT1-209ENST00000582653 STAG3L2P0CL84 134 aa13.99□□□□□ -0.17
SHMT1-209ENST00000582653 STAG3L3P0CL85 134 aa13.99□□□□□ -0.17
SHMT1-209ENST00000582653 LINC00315P59091 139 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms