RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 VSIG2Q96IQ7 327 aa9.46□□□□□ -0.9
CCDC40-216ENST00000576241 KRTAP1-5Q9BYS1 174 aa9.46□□□□□ -0.9
CCDC40-216ENST00000576241 RBAKDNA6NC62 111 aa9.45□□□□□ -0.9
CCDC40-216ENST00000576241 PAX4O43316 350 aa9.45□□□□□ -0.9
CCDC40-216ENST00000576241 SSNA1O43805 119 aa9.45□□□□□ -0.9
CCDC40-216ENST00000576241 IFNA5P01569 189 aa9.45□□□□□ -0.9
CCDC40-216ENST00000576241 H2BFSP57053 126 aa9.45□□□□□ -0.9
CCDC40-216ENST00000576241 RANP62826 216 aaKnown RBP9.45□□□□□ -0.9
CCDC40-216ENST00000576241 ZNF415Q09FC8 603 aa9.45□□□□□ -0.9
CCDC40-216ENST00000576241 FFAR4Q5NUL3 377 aa9.45□□□□□ -0.9
CCDC40-216ENST00000576241 PRR9Q5T870 116 aa9.45□□□□□ -0.9
CCDC40-216ENST00000576241 LYPD1Q8N2G4 141 aa9.45□□□□□ -0.9
CCDC40-216ENST00000576241 ST6GAL2Q96JF0 529 aa9.45□□□□□ -0.9
CCDC40-216ENST00000576241 MRPL16Q9NX20 251 aaKnown RBP9.45□□□□□ -0.9
CCDC40-216ENST00000576241 TP53TG3Q9ULZ0 132 aa9.45□□□□□ -0.9
CCDC40-216ENST00000576241 ICOSQ9Y6W8 199 aa9.45□□□□□ -0.9
CCDC40-216ENST00000576241 IGHV3-53P01767 116 aa9.44□□□□□ -0.9
CCDC40-216ENST00000576241 BTF3P20290 206 aaKnown RBP9.44□□□□□ -0.9
CCDC40-216ENST00000576241 TAS2R45P59539 299 aa9.44□□□□□ -0.9
CCDC40-216ENST00000576241 SLAQ13239 276 aa9.44□□□□□ -0.9
CCDC40-216ENST00000576241 KHDC3LQ587J8 217 aa9.44□□□□□ -0.9
CCDC40-216ENST00000576241 SCGB1C1Q8TD33 95 aa9.44□□□□□ -0.9
CCDC40-216ENST00000576241 MARVELD1Q9BSK0 173 aa9.44□□□□□ -0.9
CCDC40-216ENST00000576241 PRO0255Q9UI72 69 aa9.44□□□□□ -0.9
CCDC40-216ENST00000576241 HSPB11Q9Y547 144 aa9.44□□□□□ -0.9
CCDC40-216ENST00000576241 MPC2O95563 127 aa9.43□□□□□ -0.9
CCDC40-216ENST00000576241 DEFA1P59665 94 aa9.43□□□□□ -0.9
CCDC40-216ENST00000576241 DEFA3P59666 94 aa9.43□□□□□ -0.9
CCDC40-216ENST00000576241 IFITM3Q01628 133 aa9.43□□□□□ -0.9
CCDC40-216ENST00000576241 ZNF266Q14584 549 aa9.43□□□□□ -0.9
CCDC40-216ENST00000576241 SPATA12Q7Z6I5 190 aa9.43□□□□□ -0.9
CCDC40-216ENST00000576241 PTTG2Q9NZH5 202 aa9.43□□□□□ -0.9
CCDC40-216ENST00000576241 SRRM2Q9UQ35 2752 aaKnown RBP9.42□□□□□ -0.9
CCDC40-216ENST00000576241 SIVA1O15304 175 aa9.42□□□□□ -0.9
CCDC40-216ENST00000576241 RPL12P30050 165 aaKnown RBP9.42□□□□□ -0.9
CCDC40-216ENST00000576241 MUC21Q5SSG8 566 aa9.42□□□□□ -0.9
CCDC40-216ENST00000576241 Q6ZQT7 251 aa9.42□□□□□ -0.9
CCDC40-216ENST00000576241 SMIM3Q9BZL3 60 aa9.42□□□□□ -0.9
CCDC40-216ENST00000576241 HHLA3Q9XRX5 114 aa9.42□□□□□ -0.9
CCDC40-216ENST00000576241 LENEPQ9Y5L5 61 aa9.42□□□□□ -0.9
CCDC40-216ENST00000576241 NXPH4O95158 308 aa9.41□□□□□ -0.9
CCDC40-216ENST00000576241 FAM74A1Q5RGS3 127 aa9.41□□□□□ -0.9
CCDC40-216ENST00000576241 FAM159AQ6UWV7 190 aa9.41□□□□□ -0.9
CCDC40-216ENST00000576241 CMTM2Q8TAZ6 248 aa9.41□□□□□ -0.9
CCDC40-216ENST00000576241 HYLS1Q96M11 299 aa9.41□□□□□ -0.9
CCDC40-216ENST00000576241 C8orf49Q96NF6 230 aa9.41□□□□□ -0.9
CCDC40-216ENST00000576241 DNAH5Q8TE73 4624 aa9.41□□□□□ -0.9
CCDC40-216ENST00000576241 TRGV11A0A075B6L2 103 aa9.4□□□□□ -0.9
CCDC40-216ENST00000576241 TRGV4A0A0C4DH28 118 aa9.4□□□□□ -0.9
CCDC40-216ENST00000576241 DIRC3C9JPN6 131 aa9.4□□□□□ -0.9
CCDC40-216ENST00000576241 INAFM2P0DMQ5 153 aa9.4□□□□□ -0.9
CCDC40-216ENST00000576241 CRYBA4P53673 196 aa9.4□□□□□ -0.9
CCDC40-216ENST00000576241 LINC00315P59091 139 aa9.4□□□□□ -0.9
CCDC40-216ENST00000576241 MRPL23Q16540 153 aaKnown RBP9.4□□□□□ -0.9
CCDC40-216ENST00000576241 Q6AWC8 147 aa9.4□□□□□ -0.9
CCDC40-216ENST00000576241 MBD2Q9UBB5 411 aa9.4□□□□□ -0.9
CCDC40-216ENST00000576241 A0A1W2PPV4 95 aa9.39□□□□□ -0.91
CCDC40-216ENST00000576241 A6NHS1 94 aa9.39□□□□□ -0.91
CCDC40-216ENST00000576241 FHL2Q14192 279 aa9.39□□□□□ -0.91
CCDC40-216ENST00000576241 TMEM183BQ1AE95 376 aa9.39□□□□□ -0.91
CCDC40-216ENST00000576241 ACOT6Q3I5F7 207 aaPredicted RBP9.39□□□□□ -0.91
CCDC40-216ENST00000576241 TMEM183AQ8IXX5 376 aa9.39□□□□□ -0.91
CCDC40-216ENST00000576241 PCNPQ8WW12 178 aaKnown RBP9.39□□□□□ -0.91
CCDC40-216ENST00000576241 TMED6Q8WW62 240 aa9.39□□□□□ -0.91
CCDC40-216ENST00000576241 SPXQ9BT56 116 aa9.39□□□□□ -0.91
CCDC40-216ENST00000576241 OTORQ9NRC9 128 aa9.39□□□□□ -0.91
CCDC40-216ENST00000576241 MDFICQ9P1T7 246 aa9.39□□□□□ -0.91
CCDC40-216ENST00000576241 NAGKQ9UJ70 344 aa9.39□□□□□ -0.91
CCDC40-216ENST00000576241 RPH3ALQ9UNE2 315 aa9.39□□□□□ -0.91
CCDC40-216ENST00000576241 PGPA6NDG6 321 aa9.38□□□□□ -0.91
CCDC40-216ENST00000576241 PQLC2Q6ZP29 291 aa9.38□□□□□ -0.91
CCDC40-216ENST00000576241 NEGR1Q7Z3B1 354 aa9.38□□□□□ -0.91
CCDC40-216ENST00000576241 MYCBP2O75592 4640 aa9.38□□□□□ -0.91
CCDC40-216ENST00000576241 EPM2AB3EWF7 344 aa9.37□□□□□ -0.91
CCDC40-216ENST00000576241 SFTA3P0C7M3 94 aa9.37□□□□□ -0.91
CCDC40-216ENST00000576241 SRIP30626 198 aa9.37□□□□□ -0.91
CCDC40-216ENST00000576241 KRTAP10-2P60368 255 aa9.37□□□□□ -0.91
CCDC40-216ENST00000576241 LYPD5Q6UWN5 251 aa9.37□□□□□ -0.91
CCDC40-216ENST00000576241 GOLT1AQ6ZVE7 132 aa9.37□□□□□ -0.91
CCDC40-216ENST00000576241 IQCF2Q8IXL9 164 aa9.37□□□□□ -0.91
CCDC40-216ENST00000576241 OR10G4Q8NGN3 311 aa9.37□□□□□ -0.91
CCDC40-216ENST00000576241 RASL10AQ92737 203 aa9.37□□□□□ -0.91
CCDC40-216ENST00000576241 ZNF479Q96JC4 524 aa9.37□□□□□ -0.91
CCDC40-216ENST00000576241 TRAV9-2A0A087WT02 112 aa9.36□□□□□ -0.91
CCDC40-216ENST00000576241 EREGO14944 169 aa9.36□□□□□ -0.91
CCDC40-216ENST00000576241 EIF3GO75821 320 aaKnown RBP eCLIP9.36□□□□□ -0.91
CCDC40-216ENST00000576241 ORM1P02763 201 aa9.36□□□□□ -0.91
CCDC40-216ENST00000576241 TDRG1Q3Y452 100 aa9.36□□□□□ -0.91
CCDC40-216ENST00000576241 ARL6IP6Q8N6S5 226 aa9.36□□□□□ -0.91
CCDC40-216ENST00000576241 WFDC1Q9HC57 220 aa9.36□□□□□ -0.91
CCDC40-216ENST00000576241 TRAV21A0A0B4J279 112 aa9.35□□□□□ -0.91
CCDC40-216ENST00000576241 C9JCJ5 164 aa9.35□□□□□ -0.91
CCDC40-216ENST00000576241 K7EQD1 137 aa9.35□□□□□ -0.91
CCDC40-216ENST00000576241 GYPEP15421 78 aa9.35□□□□□ -0.91
CCDC40-216ENST00000576241 ERVFC1-1P60608 527 aa9.35□□□□□ -0.91
CCDC40-216ENST00000576241 RAB2AP61019 212 aa9.35□□□□□ -0.91
CCDC40-216ENST00000576241 Q6ZRN7 208 aaPredicted RBP9.35□□□□□ -0.91
CCDC40-216ENST00000576241 NFE4Q86UQ8 179 aa9.35□□□□□ -0.91
CCDC40-216ENST00000576241 OR10G9Q8NGN4 311 aa9.35□□□□□ -0.91
CCDC40-216ENST00000576241 OR10G7Q8NGN6 311 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms