RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 COA4Q9NYJ1 87 aa4.42□□□□□ -1.7
VPS53-212ENST00000572259 FKBP11Q9NYL4 201 aa4.42□□□□□ -1.7
VPS53-212ENST00000572259 BET1LQ9NYM9 111 aa4.42□□□□□ -1.7
VPS53-212ENST00000572259 COPZ2Q9P299 210 aa4.42□□□□□ -1.7
VPS53-212ENST00000572259 IGHV6-1A0A0B4J1U7 121 aa4.41□□□□□ -1.7
VPS53-212ENST00000572259 PIGBOS1A0A0B4J2F0 54 aa4.41□□□□□ -1.7
VPS53-212ENST00000572259 FAM223BA6NKX1 122 aa4.41□□□□□ -1.7
VPS53-212ENST00000572259 LINC00587B1AMM8 73 aa4.41□□□□□ -1.7
VPS53-212ENST00000572259 I3L521 148 aa4.41□□□□□ -1.7
VPS53-212ENST00000572259 DUSP14O95147 198 aaKnown RBP4.41□□□□□ -1.7
VPS53-212ENST00000572259 CD3DP04234 171 aa4.41□□□□□ -1.7
VPS53-212ENST00000572259 LGALS1P09382 135 aaKnown RBP4.41□□□□□ -1.7
VPS53-212ENST00000572259 AKAIN1P0CW23 69 aa4.41□□□□□ -1.7
VPS53-212ENST00000572259 DEFA4P12838 97 aa4.41□□□□□ -1.7
VPS53-212ENST00000572259 HIST1H1BP16401 226 aaKnown RBP4.41□□□□□ -1.7
VPS53-212ENST00000572259 LPAR6P43657 344 aa4.41□□□□□ -1.7
VPS53-212ENST00000572259 NDPQ00604 133 aa4.41□□□□□ -1.7
VPS53-212ENST00000572259 ATP5G2Q06055 141 aa4.41□□□□□ -1.7
VPS53-212ENST00000572259 EIF4EBP1Q13541 118 aaPredicted RBP4.41□□□□□ -1.7
VPS53-212ENST00000572259 SCGB2B2Q4G0G5 96 aa4.41□□□□□ -1.7
VPS53-212ENST00000572259 C2orf66Q6UXQ4 117 aa4.41□□□□□ -1.7
VPS53-212ENST00000572259 HSD17B13Q7Z5P4 300 aaPredicted RBP4.41□□□□□ -1.7
VPS53-212ENST00000572259 FAM223AQ8IWN6 122 aa4.41□□□□□ -1.7
VPS53-212ENST00000572259 TMEM61Q8N0U2 210 aa4.41□□□□□ -1.7
VPS53-212ENST00000572259 TTC9CQ8N5M4 171 aa4.41□□□□□ -1.7
VPS53-212ENST00000572259 MYOZ3Q8TDC0 251 aa4.41□□□□□ -1.7
VPS53-212ENST00000572259 SMIM4Q8WVI0 70 aa4.41□□□□□ -1.7
VPS53-212ENST00000572259 KRTAP1-5Q9BYS1 174 aa4.41□□□□□ -1.7
VPS53-212ENST00000572259 SH3BGRL3Q9H299 93 aa4.41□□□□□ -1.7
VPS53-212ENST00000572259 SCP2D1Q9UJQ7 156 aa4.41□□□□□ -1.7
VPS53-212ENST00000572259 PKIGQ9Y2B9 76 aa4.41□□□□□ -1.7
VPS53-212ENST00000572259 TRAV8-3A0A0A6YYJ7 113 aa4.4□□□□□ -1.71
VPS53-212ENST00000572259 WI2-2373I1.2A0A1W2PRP0 233 aa4.4□□□□□ -1.71
VPS53-212ENST00000572259 PLAC8L1A1L4L8 177 aa4.4□□□□□ -1.71
VPS53-212ENST00000572259 F8W036 122 aa4.4□□□□□ -1.71
VPS53-212ENST00000572259 K7EP13 123 aa4.4□□□□□ -1.71
VPS53-212ENST00000572259 OVOL1O14753 267 aa4.4□□□□□ -1.71
VPS53-212ENST00000572259 GSTZ1O43708 216 aaPredicted RBP4.4□□□□□ -1.71
VPS53-212ENST00000572259 KRASP01116 189 aa4.4□□□□□ -1.71
VPS53-212ENST00000572259 IGHV3-11P01762 117 aa4.4□□□□□ -1.71
VPS53-212ENST00000572259 INPP1P49441 399 aa4.4□□□□□ -1.71
VPS53-212ENST00000572259 PIGPP57054 158 aa4.4□□□□□ -1.71
VPS53-212ENST00000572259 EGFEM1PQ0D2K5 195 aa4.4□□□□□ -1.71
VPS53-212ENST00000572259 DEFB136Q30KP8 78 aa4.4□□□□□ -1.71
VPS53-212ENST00000572259 ZNF876PQ49A33 203 aa4.4□□□□□ -1.71
VPS53-212ENST00000572259 PYDC2Q56P42 97 aa4.4□□□□□ -1.71
VPS53-212ENST00000572259 KPRPQ5T749 579 aaPredicted RBP4.4□□□□□ -1.71
VPS53-212ENST00000572259 ZNF343Q6P1L6 599 aa4.4□□□□□ -1.71
VPS53-212ENST00000572259 ZNF429Q86V71 674 aa4.4□□□□□ -1.71
VPS53-212ENST00000572259 DEDD2Q8WXF8 326 aa4.4□□□□□ -1.71
VPS53-212ENST00000572259 OR4C12Q96R67 309 aa4.4□□□□□ -1.71
VPS53-212ENST00000572259 CHCHD5Q9BSY4 110 aa4.4□□□□□ -1.71
VPS53-212ENST00000572259 LYRM2Q9NU23 88 aaPredicted RBP4.4□□□□□ -1.71
VPS53-212ENST00000572259 CACFD1Q9UGQ2 172 aa4.4□□□□□ -1.71
VPS53-212ENST00000572259 SS18L2Q9UHA2 77 aa4.4□□□□□ -1.71
VPS53-212ENST00000572259 PRNDQ9UKY0 176 aa4.4□□□□□ -1.71
VPS53-212ENST00000572259 PYGO1Q9Y3Y4 419 aa4.4□□□□□ -1.71
VPS53-212ENST00000572259 LOC389332A0A1B0GUA5 103 aa4.39□□□□□ -1.71
VPS53-212ENST00000572259 A0A1W2PRE2 83 aa4.39□□□□□ -1.71
VPS53-212ENST00000572259 PEX7O00628 323 aa4.39□□□□□ -1.71
VPS53-212ENST00000572259 C1QBP02746 253 aa4.39□□□□□ -1.71
VPS53-212ENST00000572259 AMBPP02760 352 aa4.39□□□□□ -1.71
VPS53-212ENST00000572259 CTSDP07339 412 aaPredicted RBP4.39□□□□□ -1.71
VPS53-212ENST00000572259 CHTF8P0CG12 524 aa4.39□□□□□ -1.71
VPS53-212ENST00000572259 TRAPPC2P0DI81 140 aa4.39□□□□□ -1.71
VPS53-212ENST00000572259 TRAPPC2BP0DI82 140 aa4.39□□□□□ -1.71
VPS53-212ENST00000572259 APELAP0DMC3 54 aa4.39□□□□□ -1.71
VPS53-212ENST00000572259 ERHP84090 104 aaKnown RBP4.39□□□□□ -1.71
VPS53-212ENST00000572259 RHOGP84095 191 aa4.39□□□□□ -1.71
VPS53-212ENST00000572259 JOSD1Q15040 202 aaPredicted RBP4.39□□□□□ -1.71
VPS53-212ENST00000572259 DEFB121Q5J5C9 76 aa4.39□□□□□ -1.71
VPS53-212ENST00000572259 GOLT1AQ6ZVE7 132 aa4.39□□□□□ -1.71
VPS53-212ENST00000572259 LHFPL1Q86WI0 220 aa4.39□□□□□ -1.71
VPS53-212ENST00000572259 TOMM5Q8N4H5 51 aa4.39□□□□□ -1.71
VPS53-212ENST00000572259 DEFB125Q8N687 156 aa4.39□□□□□ -1.71
VPS53-212ENST00000572259 LINC00337Q8N6G1 96 aa4.39□□□□□ -1.71
VPS53-212ENST00000572259 TMEM190Q8WZ59 177 aa4.39□□□□□ -1.71
VPS53-212ENST00000572259 DCUN1D4Q92564 292 aa4.39□□□□□ -1.71
VPS53-212ENST00000572259 SLC35E1Q96K37 410 aa4.39□□□□□ -1.71
VPS53-212ENST00000572259 PDCD10Q9BUL8 212 aa4.39□□□□□ -1.71
VPS53-212ENST00000572259 SLC25A2Q9BXI2 301 aa4.39□□□□□ -1.71
VPS53-212ENST00000572259 FXYD6Q9H0Q3 95 aa4.39□□□□□ -1.71
VPS53-212ENST00000572259 RNASE7Q9H1E1 156 aaKnown RBP4.39□□□□□ -1.71
VPS53-212ENST00000572259 Q9H3A6 140 aa4.39□□□□□ -1.71
VPS53-212ENST00000572259 A0A087WYN8 130 aa4.38□□□□□ -1.71
VPS53-212ENST00000572259 TRBV7-1A0A0A6YYK4 115 aa4.38□□□□□ -1.71
VPS53-212ENST00000572259 C3orf85A0A1B0GTC6 90 aa4.38□□□□□ -1.71
VPS53-212ENST00000572259 KLLNB2CW77 178 aa4.38□□□□□ -1.71
VPS53-212ENST00000572259 G6PCP35575 357 aa4.38□□□□□ -1.71
VPS53-212ENST00000572259 AKR1C2P52895 323 aa4.38□□□□□ -1.71
VPS53-212ENST00000572259 REG3AQ06141 175 aa4.38□□□□□ -1.71
VPS53-212ENST00000572259 RBMY1FQ15415 496 aaKnown RBP4.38□□□□□ -1.71
VPS53-212ENST00000572259 MRGPRG-AS1Q2M3A8 158 aa4.38□□□□□ -1.71
VPS53-212ENST00000572259 C15orf32Q32M92 178 aa4.38□□□□□ -1.71
VPS53-212ENST00000572259 CASC10Q5T4H9 136 aa4.38□□□□□ -1.71
VPS53-212ENST00000572259 C1orf194Q5T5A4 169 aa4.38□□□□□ -1.71
VPS53-212ENST00000572259 FAM222AQ5U5X8 452 aa4.38□□□□□ -1.71
VPS53-212ENST00000572259 SGPP2Q8IWX5 399 aa4.38□□□□□ -1.71
VPS53-212ENST00000572259 FAM24BQ8N5W8 94 aa4.38□□□□□ -1.71
VPS53-212ENST00000572259 GDPD1Q8N9F7 314 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms