RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 A0A0D9SG52 128 aa11.65□□□□□ -0.54
CLK3-227ENST00000570296 MED6O75586 246 aa11.65□□□□□ -0.54
CLK3-227ENST00000570296 GPX1P07203 203 aa11.65□□□□□ -0.54
CLK3-227ENST00000570296 IGLC2P0DOY2 106 aa11.65□□□□□ -0.54
CLK3-227ENST00000570296 PXDC1Q5TGL8 231 aa11.65□□□□□ -0.54
CLK3-227ENST00000570296 RMI2Q96E14 147 aa11.65□□□□□ -0.54
CLK3-227ENST00000570296 LINC00477Q96M19 166 aa11.65□□□□□ -0.54
CLK3-227ENST00000570296 LINC01600Q96MT4 127 aa11.65□□□□□ -0.54
CLK3-227ENST00000570296 SMCO3A2RU48 225 aa11.64□□□□□ -0.55
CLK3-227ENST00000570296 PLA2G10O15496 165 aa11.64□□□□□ -0.55
CLK3-227ENST00000570296 ERCC8Q13216 396 aa11.64□□□□□ -0.55
CLK3-227ENST00000570296 ODF1Q14990 250 aa11.64□□□□□ -0.55
CLK3-227ENST00000570296 LINC00305Q7Z4B0 112 aa11.64□□□□□ -0.55
CLK3-227ENST00000570296 TRAV8-1A0A0A6YYK1 113 aa11.63□□□□□ -0.55
CLK3-227ENST00000570296 NDUFB6O95139 128 aa11.63□□□□□ -0.55
CLK3-227ENST00000570296 ANXA3P12429 323 aa11.63□□□□□ -0.55
CLK3-227ENST00000570296 SRPXP78539 464 aa11.63□□□□□ -0.55
CLK3-227ENST00000570296 FFAR4Q5NUL3 377 aa11.63□□□□□ -0.55
CLK3-227ENST00000570296 MRPL53Q96EL3 112 aaKnown RBP11.63□□□□□ -0.55
CLK3-227ENST00000570296 SPXQ9BT56 116 aa11.63□□□□□ -0.55
CLK3-227ENST00000570296 FAM240BA0A1B0GVZ2 78 aa11.62□□□□□ -0.55
CLK3-227ENST00000570296 H3BQ15 152 aa11.62□□□□□ -0.55
CLK3-227ENST00000570296 K7EPK0 472 aa11.62□□□□□ -0.55
CLK3-227ENST00000570296 GATA1P15976 413 aaPredicted RBP11.62□□□□□ -0.55
CLK3-227ENST00000570296 GUK1Q16774 197 aa11.62□□□□□ -0.55
CLK3-227ENST00000570296 Q8N3U1 123 aa11.62□□□□□ -0.55
CLK3-227ENST00000570296 OR4C5Q8NGB2 326 aa11.62□□□□□ -0.55
CLK3-227ENST00000570296 ENKURQ8TC29 256 aa11.62□□□□□ -0.55
CLK3-227ENST00000570296 PIGBOS1A0A0B4J2F0 54 aa11.61□□□□□ -0.55
CLK3-227ENST00000570296 GGTLC3B5MD39 225 aa11.61□□□□□ -0.55
CLK3-227ENST00000570296 TMEM128Q5BJH2 165 aa11.61□□□□□ -0.55
CLK3-227ENST00000570296 SPANXN5Q5MJ07 72 aa11.61□□□□□ -0.55
CLK3-227ENST00000570296 FAM122CQ6P4D5 195 aa11.61□□□□□ -0.55
CLK3-227ENST00000570296 ZFAND2AQ8N6M9 145 aa11.61□□□□□ -0.55
CLK3-227ENST00000570296 AGPAT4-IT1Q9H0P7 198 aa11.61□□□□□ -0.55
CLK3-227ENST00000570296 A0A0U1RQV1 116 aa11.6□□□□□ -0.55
CLK3-227ENST00000570296 SYNGR2O43760 224 aa11.6□□□□□ -0.55
CLK3-227ENST00000570296 TCRBP04435 133 aa11.6□□□□□ -0.55
CLK3-227ENST00000570296 BTCP35070 178 aa11.6□□□□□ -0.55
CLK3-227ENST00000570296 PRR9Q5T870 116 aa11.6□□□□□ -0.55
CLK3-227ENST00000570296 Q6ZQT7 251 aa11.6□□□□□ -0.55
CLK3-227ENST00000570296 GTSF1LQ9H1H1 148 aa11.6□□□□□ -0.55
CLK3-227ENST00000570296 STRAPQ9Y3F4 350 aaKnown RBP11.6□□□□□ -0.55
CLK3-227ENST00000570296 WRBO00258 174 aa11.59□□□□□ -0.55
CLK3-227ENST00000570296 ZNF253O75346 499 aa11.59□□□□□ -0.55
CLK3-227ENST00000570296 SLC25A6P12236 298 aa11.59□□□□□ -0.55
CLK3-227ENST00000570296 VAMP1P23763 118 aa11.59□□□□□ -0.55
CLK3-227ENST00000570296 UBE2MP61081 183 aaKnown RBP11.59□□□□□ -0.55
CLK3-227ENST00000570296 IFITM3Q01628 133 aa11.59□□□□□ -0.55
CLK3-227ENST00000570296 C14orf177Q52M58 125 aa11.59□□□□□ -0.55
CLK3-227ENST00000570296 DAZ4Q86SG3 579 aaKnown RBP11.59□□□□□ -0.55
CLK3-227ENST00000570296 DAZ3Q9NR90 486 aaKnown RBP11.59□□□□□ -0.55
CLK3-227ENST00000570296 DUXBA0A1W2PPF3 345 aa11.58□□□□□ -0.56
CLK3-227ENST00000570296 C20orf85Q9H1P6 137 aa11.58□□□□□ -0.56
CLK3-227ENST00000570296 FLVCR2Q9UPI3 526 aa11.58□□□□□ -0.56
CLK3-227ENST00000570296 IGKV2D-24A0A075B6R9 120 aa11.57□□□□□ -0.56
CLK3-227ENST00000570296 H3BP45 60 aa11.57□□□□□ -0.56
CLK3-227ENST00000570296 M0R3E3 92 aa11.57□□□□□ -0.56
CLK3-227ENST00000570296 POLR2GP62487 172 aaKnown RBP eCLIP11.57□□□□□ -0.56
CLK3-227ENST00000570296 PRADC1Q9BSG0 188 aa11.57□□□□□ -0.56
CLK3-227ENST00000570296 SH3BGRL3Q9H299 93 aa11.57□□□□□ -0.56
CLK3-227ENST00000570296 NUDT15Q9NV35 164 aa11.57□□□□□ -0.56
CLK3-227ENST00000570296 TRAV6A0A075B6T7 132 aa11.56□□□□□ -0.56
CLK3-227ENST00000570296 IGHV3-16A0A0C4DH30 117 aa11.56□□□□□ -0.56
CLK3-227ENST00000570296 COX7A2P2O60397 106 aa11.56□□□□□ -0.56
CLK3-227ENST00000570296 SFT2D2O95562 160 aa11.56□□□□□ -0.56
CLK3-227ENST00000570296 H2AFB2P0C5Z0 115 aa11.56□□□□□ -0.56
CLK3-227ENST00000570296 VWC2Q2TAL6 325 aa11.56□□□□□ -0.56
CLK3-227ENST00000570296 ZNF546Q86UE3 836 aa11.56□□□□□ -0.56
CLK3-227ENST00000570296 PRELID1Q9Y255 219 aa11.56□□□□□ -0.56
CLK3-227ENST00000570296 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.56□□□□□ -0.56
CLK3-227ENST00000570296 A0A0J9YXV3 536 aa11.55□□□□□ -0.56
CLK3-227ENST00000570296 SLC38A11Q08AI6 406 aa11.55□□□□□ -0.56
CLK3-227ENST00000570296 PPP1R1AQ13522 171 aa11.55□□□□□ -0.56
CLK3-227ENST00000570296 RHOHQ15669 191 aa11.55□□□□□ -0.56
CLK3-227ENST00000570296 TMEM78Q5T7P6 136 aa11.55□□□□□ -0.56
CLK3-227ENST00000570296 SLC25A29Q8N8R3 303 aa11.55□□□□□ -0.56
CLK3-227ENST00000570296 NPVFQ9HCQ7 196 aa11.55□□□□□ -0.56
CLK3-227ENST00000570296 TRGV11A0A075B6L2 103 aa11.54□□□□□ -0.56
CLK3-227ENST00000570296 FNDC10F2Z333 226 aa11.54□□□□□ -0.56
CLK3-227ENST00000570296 GOSR2O14653 212 aa11.54□□□□□ -0.56
CLK3-227ENST00000570296 MUC21Q5SSG8 566 aa11.54□□□□□ -0.56
CLK3-227ENST00000570296 C10orf113Q5VZT2 155 aa11.54□□□□□ -0.56
CLK3-227ENST00000570296 NRARPQ7Z6K4 114 aa11.54□□□□□ -0.56
CLK3-227ENST00000570296 C9orf170A2RU37 121 aa11.53□□□□□ -0.56
CLK3-227ENST00000570296 M0R2P5 195 aa11.53□□□□□ -0.56
CLK3-227ENST00000570296 PTTG1O95997 202 aa11.53□□□□□ -0.56
CLK3-227ENST00000570296 SEC11BP0C7V7 166 aa11.53□□□□□ -0.56
CLK3-227ENST00000570296 HIST1H1EP10412 219 aaKnown RBP11.53□□□□□ -0.56
CLK3-227ENST00000570296 KRTAP10-8P60410 259 aa11.53□□□□□ -0.56
CLK3-227ENST00000570296 TMEM183BQ1AE95 376 aa11.53□□□□□ -0.56
CLK3-227ENST00000570296 TMEM183AQ8IXX5 376 aa11.53□□□□□ -0.56
CLK3-227ENST00000570296 ZNF492Q9P255 531 aa11.53□□□□□ -0.56
CLK3-227ENST00000570296 TRBV7-9A0A0J9YWB2 115 aa11.52□□□□□ -0.57
CLK3-227ENST00000570296 TRBV6-4A0A1B0GX49 114 aa11.52□□□□□ -0.57
CLK3-227ENST00000570296 FBLL1A6NHQ2 334 aaKnown RBP11.52□□□□□ -0.57
CLK3-227ENST00000570296 OR10J4P0C629 311 aa11.52□□□□□ -0.57
CLK3-227ENST00000570296 C2orf50Q96LR7 162 aa11.52□□□□□ -0.57
CLK3-227ENST00000570296 OR51M1Q9H341 326 aa11.52□□□□□ -0.57
CLK3-227ENST00000570296 GPN1Q9HCN4 374 aaPredicted RBP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 177.3 ms