RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 TRBV7-3A0A075B6L6 115 aa8.53□□□□□ -1.04
CLK3-226ENST00000569406 TRGV5A0A0B4J1U4 118 aa8.53□□□□□ -1.04
CLK3-226ENST00000569406 TRAV41A0A0B4J266 112 aa8.53□□□□□ -1.04
CLK3-226ENST00000569406 COQ2Q96H96 371 aa8.53□□□□□ -1.04
CLK3-226ENST00000569406 S1PR3Q99500 378 aa8.53□□□□□ -1.04
CLK3-226ENST00000569406 DKK4Q9UBT3 224 aa8.53□□□□□ -1.04
CLK3-226ENST00000569406 SVEP1Q4LDE5 3571 aa8.53□□□□□ -1.04
CLK3-226ENST00000569406 K7EM74 188 aa8.52□□□□□ -1.04
CLK3-226ENST00000569406 DPM2O94777 84 aa8.52□□□□□ -1.04
CLK3-226ENST00000569406 OXTP01178 125 aa8.52□□□□□ -1.04
CLK3-226ENST00000569406 CRYGBP07316 175 aa8.52□□□□□ -1.04
CLK3-226ENST00000569406 FAM27E3Q08E93 113 aa8.52□□□□□ -1.04
CLK3-226ENST00000569406 SCGB1D4Q6XE38 83 aa8.52□□□□□ -1.04
CLK3-226ENST00000569406 WDR31Q8NA23 367 aa8.52□□□□□ -1.04
CLK3-226ENST00000569406 SLC25A10Q9UBX3 287 aaPredicted RBP8.52□□□□□ -1.04
CLK3-226ENST00000569406 WI2-2373I1.2A0A1W2PRP0 233 aa8.52□□□□□ -1.05
CLK3-226ENST00000569406 ARMS2P0C7Q2 107 aa8.52□□□□□ -1.05
CLK3-226ENST00000569406 UBE2D3P61077 147 aa8.52□□□□□ -1.05
CLK3-226ENST00000569406 UBE2D2P62837 147 aa8.52□□□□□ -1.05
CLK3-226ENST00000569406 ZNF497Q6ZNH5 498 aa8.52□□□□□ -1.05
CLK3-226ENST00000569406 SEM1Q6ZVN7 128 aa8.52□□□□□ -1.05
CLK3-226ENST00000569406 C12orf77C9JDV5 145 aa8.52□□□□□ -1.05
CLK3-226ENST00000569406 BRWD1-AS2P59051 145 aa8.52□□□□□ -1.05
CLK3-226ENST00000569406 EIF4EBP1Q13541 118 aaPredicted RBP8.52□□□□□ -1.05
CLK3-226ENST00000569406 PYGO1Q9Y3Y4 419 aa8.52□□□□□ -1.05
CLK3-226ENST00000569406 TACC2O95359 2948 aa8.51□□□□□ -1.05
CLK3-226ENST00000569406 IGHV3OR15-7A0A075B7D8 119 aa8.51□□□□□ -1.05
CLK3-226ENST00000569406 A0A1B0GUT8 65 aa8.51□□□□□ -1.05
CLK3-226ENST00000569406 OVOL1O14753 267 aa8.51□□□□□ -1.05
CLK3-226ENST00000569406 PSPNO60542 156 aa8.51□□□□□ -1.05
CLK3-226ENST00000569406 NDUFA3O95167 84 aa8.51□□□□□ -1.05
CLK3-226ENST00000569406 IGKV3-15P01624 115 aa8.51□□□□□ -1.05
CLK3-226ENST00000569406 PYYP10082 97 aa8.51□□□□□ -1.05
CLK3-226ENST00000569406 PRB4P10163 310 aaPredicted RBP8.51□□□□□ -1.05
CLK3-226ENST00000569406 FOXF2Q12947 444 aa8.51□□□□□ -1.05
CLK3-226ENST00000569406 TWIST1Q15672 202 aa8.51□□□□□ -1.05
CLK3-226ENST00000569406 LINC00596Q86U02 117 aa8.51□□□□□ -1.05
CLK3-226ENST00000569406 SBSPONQ8IVN8 264 aa8.51□□□□□ -1.05
CLK3-226ENST00000569406 MSMPQ1L6U9 139 aa8.51□□□□□ -1.05
CLK3-226ENST00000569406 MBD3L2Q8NHZ7 208 aaPredicted RBP8.51□□□□□ -1.05
CLK3-226ENST00000569406 C10orf105Q8TEF2 133 aa8.51□□□□□ -1.05
CLK3-226ENST00000569406 RPUSD1Q9UJJ7 312 aaKnown RBP8.51□□□□□ -1.05
CLK3-226ENST00000569406 MRPS12O15235 138 aaKnown RBP8.51□□□□□ -1.05
CLK3-226ENST00000569406 PLAUP00749 431 aa8.51□□□□□ -1.05
CLK3-226ENST00000569406 PSMG4Q5JS54 123 aa8.51□□□□□ -1.05
CLK3-226ENST00000569406 C9orf106Q8NAJ2 232 aa8.51□□□□□ -1.05
CLK3-226ENST00000569406 PIEZO2Q9H5I5 2752 aa8.5□□□□□ -1.05
CLK3-226ENST00000569406 CRYGDP07320 174 aa8.5□□□□□ -1.05
CLK3-226ENST00000569406 APELAP0DMC3 54 aa8.5□□□□□ -1.05
CLK3-226ENST00000569406 RIGQ13278 110 aa8.5□□□□□ -1.05
CLK3-226ENST00000569406 IL17DQ8TAD2 202 aa8.5□□□□□ -1.05
CLK3-226ENST00000569406 CNTFRP26992 372 aa8.5□□□□□ -1.05
CLK3-226ENST00000569406 C1orf195Q5TG92 126 aa8.5□□□□□ -1.05
CLK3-226ENST00000569406 LRBAP50851 2863 aa8.5□□□□□ -1.05
CLK3-226ENST00000569406 IQCF6A8MYZ5 107 aa8.5□□□□□ -1.05
CLK3-226ENST00000569406 SMKR1H3BMG3 65 aa8.5□□□□□ -1.05
CLK3-226ENST00000569406 C8orf88P0DMB2 117 aa8.5□□□□□ -1.05
CLK3-226ENST00000569406 PFN2P35080 140 aa8.5□□□□□ -1.05
CLK3-226ENST00000569406 RPL39P5Q59GN2 51 aa8.5□□□□□ -1.05
CLK3-226ENST00000569406 TEX36Q5VZQ5 186 aa8.5□□□□□ -1.05
CLK3-226ENST00000569406 SLC25A39Q9BZJ4 359 aaPredicted RBP8.5□□□□□ -1.05
CLK3-226ENST00000569406 CREBBPQ92793 2442 aa8.49□□□□□ -1.05
CLK3-226ENST00000569406 ZFHX2Q9C0A1 2572 aaPredicted RBP8.49□□□□□ -1.05
CLK3-226ENST00000569406 NOTCH3Q9UM47 2321 aa8.49□□□□□ -1.05
CLK3-226ENST00000569406 IGHV4-39P01824 125 aa8.49□□□□□ -1.05
CLK3-226ENST00000569406 Q6ZT83 130 aa8.49□□□□□ -1.05
CLK3-226ENST00000569406 TMEM86BQ8N661 226 aa8.49□□□□□ -1.05
CLK3-226ENST00000569406 FAM19A4Q96LR4 140 aa8.49□□□□□ -1.05
CLK3-226ENST00000569406 H3BMM0 161 aa8.49□□□□□ -1.05
CLK3-226ENST00000569406 WFDC11Q8NEX6 87 aa8.49□□□□□ -1.05
CLK3-226ENST00000569406 PIFOQ8TCI5 191 aa8.49□□□□□ -1.05
CLK3-226ENST00000569406 UBE2WQ96B02 151 aa8.49□□□□□ -1.05
CLK3-226ENST00000569406 MRPL35Q9NZE8 188 aaKnown RBP8.49□□□□□ -1.05
CLK3-226ENST00000569406 TRAV13-1A0A0B4J241 112 aa8.48□□□□□ -1.05
CLK3-226ENST00000569406 SPRY3O43610 288 aa8.48□□□□□ -1.05
CLK3-226ENST00000569406 LEPP41159 167 aa8.48□□□□□ -1.05
CLK3-226ENST00000569406 Q8IYB0 196 aa8.48□□□□□ -1.05
CLK3-226ENST00000569406 KLF14Q8TD94 323 aaPredicted RBP8.48□□□□□ -1.05
CLK3-226ENST00000569406 SRSF12Q8WXF0 261 aaKnown RBP8.48□□□□□ -1.05
CLK3-226ENST00000569406 C1orf159Q96HA4 380 aa8.48□□□□□ -1.05
CLK3-226ENST00000569406 SLC25A2Q9BXI2 301 aa8.48□□□□□ -1.05
CLK3-226ENST00000569406 BEX4Q9NWD9 120 aaPredicted RBP8.48□□□□□ -1.05
CLK3-226ENST00000569406 OOEPA6NGQ2 149 aa8.48□□□□□ -1.05
CLK3-226ENST00000569406 P0C879 139 aa8.48□□□□□ -1.05
CLK3-226ENST00000569406 COX7CP15954 63 aa8.48□□□□□ -1.05
CLK3-226ENST00000569406 NSUN5P1Q3KNT7 163 aa8.48□□□□□ -1.05
CLK3-226ENST00000569406 DEFB124Q8NES8 71 aa8.48□□□□□ -1.05
CLK3-226ENST00000569406 ZFHX3Q15911 3703 aa8.48□□□□□ -1.05
CLK3-226ENST00000569406 IGLV1-44P01699 117 aa8.48□□□□□ -1.05
CLK3-226ENST00000569406 SCNM1Q9BWG6 230 aa8.48□□□□□ -1.05
CLK3-226ENST00000569406 H3BTX0 84 aa8.47□□□□□ -1.05
CLK3-226ENST00000569406 MORN5Q5VZ52 161 aa8.47□□□□□ -1.05
CLK3-226ENST00000569406 ZNF329Q86UD4 541 aa8.47□□□□□ -1.05
CLK3-226ENST00000569406 CYSTM1Q9H1C7 97 aa8.47□□□□□ -1.05
CLK3-226ENST00000569406 METRNQ9UJH8 293 aa8.47□□□□□ -1.05
CLK3-226ENST00000569406 LGALS9O00182 355 aa8.47□□□□□ -1.05
CLK3-226ENST00000569406 ORMDL3Q8N138 153 aa8.47□□□□□ -1.05
CLK3-226ENST00000569406 C7orf69Q9H7B7 122 aa8.47□□□□□ -1.05
CLK3-226ENST00000569406 DSCAMO60469 2012 aa8.47□□□□□ -1.05
CLK3-226ENST00000569406 ASH1LQ9NR48 2969 aaKnown RBP8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms