RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 PSG8Q9UQ74 426 aa13.98□□□□□ -0.17
CLN3-225ENST00000566824 TRBV7-9A0A0J9YWB2 115 aa13.97□□□□□ -0.17
CLN3-225ENST00000566824 C12orf74Q32Q52 190 aa13.97□□□□□ -0.17
CLN3-225ENST00000566824 C8orf49Q96NF6 230 aa13.97□□□□□ -0.17
CLN3-225ENST00000566824 NIPSNAP3BQ9BS92 247 aa13.97□□□□□ -0.17
CLN3-225ENST00000566824 LENEPQ9Y5L5 61 aa13.97□□□□□ -0.17
CLN3-225ENST00000566824 FAM222AQ5U5X8 452 aa13.96□□□□□ -0.17
CLN3-225ENST00000566824 PRNTQ86SH4 94 aa13.96□□□□□ -0.17
CLN3-225ENST00000566824 GNG13Q9P2W3 67 aa13.96□□□□□ -0.17
CLN3-225ENST00000566824 SERTM2A0A1B0GWG4 89 aa13.95□□□□□ -0.18
CLN3-225ENST00000566824 CXorf65A6NEN9 183 aa13.95□□□□□ -0.18
CLN3-225ENST00000566824 ZNF80P51504 273 aaPredicted RBP13.95□□□□□ -0.18
CLN3-225ENST00000566824 FLI1Q01543 452 aaPredicted RBP13.95□□□□□ -0.18
CLN3-225ENST00000566824 TMEM75Q8N9X5 138 aa13.95□□□□□ -0.18
CLN3-225ENST00000566824 RNASE8Q8TDE3 154 aaKnown RBP13.95□□□□□ -0.18
CLN3-225ENST00000566824 NKX6-2Q9C056 277 aaPredicted RBP13.95□□□□□ -0.18
CLN3-225ENST00000566824 TREM1Q9NP99 234 aa13.95□□□□□ -0.18
CLN3-225ENST00000566824 DKK2Q9UBU2 259 aa13.95□□□□□ -0.18
CLN3-225ENST00000566824 TP53TG3Q9ULZ0 132 aa13.95□□□□□ -0.18
CLN3-225ENST00000566824 ARL2-SNX15V9GYD0 113 aa13.95□□□□□ -0.18
CLN3-225ENST00000566824 PLECQ15149 4684 aaKnown RBP13.95□□□□□ -0.18
CLN3-225ENST00000566824 TMEM189A5PLL7 270 aa13.94□□□□□ -0.18
CLN3-225ENST00000566824 Q6ZTC4 211 aa13.94□□□□□ -0.18
CLN3-225ENST00000566824 K7EQM0 130 aa13.93□□□□□ -0.18
CLN3-225ENST00000566824 MUC21Q5SSG8 566 aa13.93□□□□□ -0.18
CLN3-225ENST00000566824 Q6AWC8 147 aa13.93□□□□□ -0.18
CLN3-225ENST00000566824 PHLDA1Q8WV24 401 aaPredicted RBP13.93□□□□□ -0.18
CLN3-225ENST00000566824 HIST1H2BAQ96A08 127 aa13.93□□□□□ -0.18
CLN3-225ENST00000566824 PYGO2Q9BRQ0 406 aa13.93□□□□□ -0.18
CLN3-225ENST00000566824 SCO2A0A1W2PP80 73 aa13.92□□□□□ -0.18
CLN3-225ENST00000566824 SPART-AS1P0CW21 52 aa13.92□□□□□ -0.18
CLN3-225ENST00000566824 Q86TA4 180 aa13.92□□□□□ -0.18
CLN3-225ENST00000566824 TMEM263Q8WUH6 116 aaKnown RBP13.92□□□□□ -0.18
CLN3-225ENST00000566824 LINC00467Q9BRT7 94 aa13.92□□□□□ -0.18
CLN3-225ENST00000566824 IGHV1OR15-1A0A075B7D0 117 aa13.91□□□□□ -0.18
CLN3-225ENST00000566824 C11orf94C9JXX5 98 aa13.91□□□□□ -0.18
CLN3-225ENST00000566824 C11orf72Q8NBR9 251 aa13.91□□□□□ -0.18
CLN3-225ENST00000566824 C16orf74Q96GX8 76 aa13.91□□□□□ -0.18
CLN3-225ENST00000566824 C11orf21Q9P2W6 132 aa13.91□□□□□ -0.18
CLN3-225ENST00000566824 KLF12Q9Y4X4 402 aa13.91□□□□□ -0.18
CLN3-225ENST00000566824 RGS13O14921 159 aa13.9□□□□□ -0.18
CLN3-225ENST00000566824 PPT1P50897 306 aa13.9□□□□□ -0.18
CLN3-225ENST00000566824 CEMP1Q6PRD7 247 aaPredicted RBP13.9□□□□□ -0.18
CLN3-225ENST00000566824 EIF4E3Q8N5X7 224 aaKnown RBP13.9□□□□□ -0.18
CLN3-225ENST00000566824 C2CD4CQ8TF44 421 aa13.9□□□□□ -0.18
CLN3-225ENST00000566824 NOP10Q9NPE3 64 aaKnown RBP13.9□□□□□ -0.18
CLN3-225ENST00000566824 MANBALQ9NQG1 85 aa13.9□□□□□ -0.18
CLN3-225ENST00000566824 KMT2CQ8NEZ4 4911 aaKnown RBP13.9□□□□□ -0.18
CLN3-225ENST00000566824 CBY3A6NI87 242 aa13.9□□□□□ -0.19
CLN3-225ENST00000566824 ZNF493Q6ZR52 646 aa13.9□□□□□ -0.19
CLN3-225ENST00000566824 NDFIP1Q9BT67 221 aa13.9□□□□□ -0.19
CLN3-225ENST00000566824 GSN-AS1Q9NRJ2 163 aa13.9□□□□□ -0.19
CLN3-225ENST00000566824 GCGP01275 180 aa13.89□□□□□ -0.19
CLN3-225ENST00000566824 ANXA2RQ3ZCQ2 193 aa13.89□□□□□ -0.19
CLN3-225ENST00000566824 PCNPQ8WW12 178 aaKnown RBP13.89□□□□□ -0.19
CLN3-225ENST00000566824 TCEAL7Q9BRU2 100 aa13.89□□□□□ -0.19
CLN3-225ENST00000566824 NAGKQ9UJ70 344 aa13.89□□□□□ -0.19
CLN3-225ENST00000566824 TEX46H3BTG2 121 aa13.88□□□□□ -0.19
CLN3-225ENST00000566824 DEFB130BP0DP73 79 aa13.88□□□□□ -0.19
CLN3-225ENST00000566824 DEFB130AP0DP74 79 aa13.88□□□□□ -0.19
CLN3-225ENST00000566824 AKR1C3P42330 323 aa13.88□□□□□ -0.19
CLN3-225ENST00000566824 BLOC1S1P78537 153 aa13.88□□□□□ -0.19
CLN3-225ENST00000566824 TMEM183BQ1AE95 376 aa13.88□□□□□ -0.19
CLN3-225ENST00000566824 LYPD6BQ8NI32 183 aa13.88□□□□□ -0.19
CLN3-225ENST00000566824 FMC1Q96HJ9 113 aa13.88□□□□□ -0.19
CLN3-225ENST00000566824 DERL1Q9BUN8 251 aa13.88□□□□□ -0.19
CLN3-225ENST00000566824 TIMM8BQ9Y5J9 83 aaPredicted RBP13.88□□□□□ -0.19
CLN3-225ENST00000566824 TRAV21A0A0B4J279 112 aa13.87□□□□□ -0.19
CLN3-225ENST00000566824 FBLL1A6NHQ2 334 aaKnown RBP13.87□□□□□ -0.19
CLN3-225ENST00000566824 LYRM9A8MSI8 78 aa13.87□□□□□ -0.19
CLN3-225ENST00000566824 GNRH2O43555 120 aa13.87□□□□□ -0.19
CLN3-225ENST00000566824 BCL2P10415 239 aa13.87□□□□□ -0.19
CLN3-225ENST00000566824 CRIP1P50238 77 aa13.87□□□□□ -0.19
CLN3-225ENST00000566824 SMUG1Q53HV7 270 aa13.87□□□□□ -0.19
CLN3-225ENST00000566824 SAPCD1Q5SSQ6 148 aa13.87□□□□□ -0.19
CLN3-225ENST00000566824 ZC2HC1AQ96GY0 325 aa13.87□□□□□ -0.19
CLN3-225ENST00000566824 MDFICQ9P1T7 246 aa13.87□□□□□ -0.19
CLN3-225ENST00000566824 TRBV6-1A0A0K0K1D8 114 aa13.86□□□□□ -0.19
CLN3-225ENST00000566824 LTAP01374 205 aa13.86□□□□□ -0.19
CLN3-225ENST00000566824 DAD1P61803 113 aa13.86□□□□□ -0.19
CLN3-225ENST00000566824 UBE2G1P62253 170 aa13.86□□□□□ -0.19
CLN3-225ENST00000566824 TEX261Q6UWH6 196 aa13.86□□□□□ -0.19
CLN3-225ENST00000566824 TMEM183AQ8IXX5 376 aa13.86□□□□□ -0.19
CLN3-225ENST00000566824 NHLRC2Q8NBF2 726 aa13.86□□□□□ -0.19
CLN3-225ENST00000566824 C11orf52Q96A22 123 aa13.86□□□□□ -0.19
CLN3-225ENST00000566824 TRAV10A0A0B4J240 114 aa13.85□□□□□ -0.19
CLN3-225ENST00000566824 NUPR2A6NF83 97 aa13.85□□□□□ -0.19
CLN3-225ENST00000566824 MEF2BQ02080 365 aaPredicted RBP13.85□□□□□ -0.19
CLN3-225ENST00000566824 Q6ZTI0 123 aa13.85□□□□□ -0.19
CLN3-225ENST00000566824 ZNF680Q8NEM1 530 aa13.85□□□□□ -0.19
CLN3-225ENST00000566824 DEFB131BA0A096LNP1 70 aa13.84□□□□□ -0.19
CLN3-225ENST00000566824 SNURFLB1AK76 121 aa13.84□□□□□ -0.19
CLN3-225ENST00000566824 IFNA1P01562 189 aa13.84□□□□□ -0.19
CLN3-225ENST00000566824 PFN1P07737 140 aaKnown RBP13.84□□□□□ -0.19
CLN3-225ENST00000566824 HTN3P15516 51 aa13.84□□□□□ -0.19
CLN3-225ENST00000566824 TDRG1Q3Y452 100 aa13.84□□□□□ -0.19
CLN3-225ENST00000566824 FAM159AQ6UWV7 190 aa13.84□□□□□ -0.19
CLN3-225ENST00000566824 LINC00612Q8N6U2 182 aa13.84□□□□□ -0.19
CLN3-225ENST00000566824 ZFP30Q9Y2G7 519 aa13.84□□□□□ -0.19
CLN3-225ENST00000566824 LYSTQ99698 3801 aa13.83□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms