RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 A0A096LNJ9 63 aa10.32□□□□□ -0.76
VPS4A-204ENST00000566354 NDUFA3O95167 84 aa10.32□□□□□ -0.76
VPS4A-204ENST00000566354 FAM106CPP0CH98 169 aa10.32□□□□□ -0.76
VPS4A-204ENST00000566354 FAM106AQ4KMX7 169 aa10.32□□□□□ -0.76
VPS4A-204ENST00000566354 ERASQ7Z444 233 aa10.32□□□□□ -0.76
VPS4A-204ENST00000566354 LY6G5BQ8NDX9 201 aa10.32□□□□□ -0.76
VPS4A-204ENST00000566354 ITPR2Q14571 2701 aa10.31□□□□□ -0.76
VPS4A-204ENST00000566354 FBLL1A6NHQ2 334 aaKnown RBP10.31□□□□□ -0.76
VPS4A-204ENST00000566354 SH2D1AO60880 128 aa10.31□□□□□ -0.76
VPS4A-204ENST00000566354 SEC11AP67812 179 aa10.31□□□□□ -0.76
VPS4A-204ENST00000566354 LGALS9BQ3B8N2 356 aa10.31□□□□□ -0.76
VPS4A-204ENST00000566354 KLF17Q5JT82 389 aaPredicted RBP10.31□□□□□ -0.76
VPS4A-204ENST00000566354 LGALS9CQ6DKI2 356 aa10.31□□□□□ -0.76
VPS4A-204ENST00000566354 OR11H6Q8NGC7 330 aa10.31□□□□□ -0.76
VPS4A-204ENST00000566354 GLMPQ8WWB7 406 aa10.31□□□□□ -0.76
VPS4A-204ENST00000566354 LOC389332A0A1B0GUA5 103 aa10.3□□□□□ -0.76
VPS4A-204ENST00000566354 TMEM213A2RRL7 107 aa10.3□□□□□ -0.76
VPS4A-204ENST00000566354 GAGE10A6NGK3 116 aa10.3□□□□□ -0.76
VPS4A-204ENST00000566354 PF4P02776 101 aa10.3□□□□□ -0.76
VPS4A-204ENST00000566354 ZFP36P26651 326 aaKnown RBP10.3□□□□□ -0.76
VPS4A-204ENST00000566354 TMEM97Q5BJF2 176 aa10.3□□□□□ -0.76
VPS4A-204ENST00000566354 AMN1Q8IY45 258 aa10.3□□□□□ -0.76
VPS4A-204ENST00000566354 OR8A1Q8NGG7 326 aa10.3□□□□□ -0.76
VPS4A-204ENST00000566354 CFHR4Q92496 578 aa10.3□□□□□ -0.76
VPS4A-204ENST00000566354 UNC79Q9P2D8 2635 aa10.3□□□□□ -0.76
VPS4A-204ENST00000566354 IGLV11-55A0A075B6I3 123 aa10.3□□□□□ -0.76
VPS4A-204ENST00000566354 NPIPB5A8MRT5 1133 aa10.3□□□□□ -0.76
VPS4A-204ENST00000566354 PRB4P10163 310 aaPredicted RBP10.3□□□□□ -0.76
VPS4A-204ENST00000566354 LMO4P61968 165 aa10.3□□□□□ -0.76
VPS4A-204ENST00000566354 LOXL1Q08397 574 aaPredicted RBP10.3□□□□□ -0.76
VPS4A-204ENST00000566354 SMAGPQ0VAQ4 97 aa10.3□□□□□ -0.76
VPS4A-204ENST00000566354 GAGE5Q13069 117 aa10.3□□□□□ -0.76
VPS4A-204ENST00000566354 GAGE6Q13070 117 aa10.3□□□□□ -0.76
VPS4A-204ENST00000566354 C10orf105Q8TEF2 133 aa10.3□□□□□ -0.76
VPS4A-204ENST00000566354 FANCD2OSQ96PS1 177 aa10.3□□□□□ -0.76
VPS4A-204ENST00000566354 HILPDAQ9Y5L2 63 aa10.3□□□□□ -0.76
VPS4A-204ENST00000566354 IGHV4-30-2A0A087WSY4 118 aa10.29□□□□□ -0.76
VPS4A-204ENST00000566354 TMSB15BA0A087X1C1 80 aa10.29□□□□□ -0.76
VPS4A-204ENST00000566354 RPL7P18124 248 aaKnown RBP10.29□□□□□ -0.76
VPS4A-204ENST00000566354 C5orf47Q569G3 176 aa10.29□□□□□ -0.76
VPS4A-204ENST00000566354 LCNL1Q6ZST4 164 aa10.29□□□□□ -0.76
VPS4A-204ENST00000566354 BCL6BQ8N143 479 aaPredicted RBP10.29□□□□□ -0.76
VPS4A-204ENST00000566354 VCX2Q9H322 139 aa10.29□□□□□ -0.76
VPS4A-204ENST00000566354 S4R3C0 116 aa10.29□□□□□ -0.76
VPS4A-204ENST00000566354 A4D1N5 150 aa10.29□□□□□ -0.76
VPS4A-204ENST00000566354 HBDP02042 147 aa10.29□□□□□ -0.76
VPS4A-204ENST00000566354 FGF6P10767 208 aa10.29□□□□□ -0.76
VPS4A-204ENST00000566354 MRPL51Q4U2R6 128 aaKnown RBP10.29□□□□□ -0.76
VPS4A-204ENST00000566354 FOXI2Q6ZQN5 318 aa10.29□□□□□ -0.76
VPS4A-204ENST00000566354 PRR25Q96S07 402 aa10.29□□□□□ -0.76
VPS4A-204ENST00000566354 CITED1Q99966 193 aa10.29□□□□□ -0.76
VPS4A-204ENST00000566354 PIMREGQ9BSJ6 248 aa10.29□□□□□ -0.76
VPS4A-204ENST00000566354 CELSR1Q9NYQ6 3014 aa10.29□□□□□ -0.76
VPS4A-204ENST00000566354 IGHV4-61A0A0C4DH41 118 aa10.28□□□□□ -0.76
VPS4A-204ENST00000566354 C7orf71A4D174 169 aa10.28□□□□□ -0.76
VPS4A-204ENST00000566354 SNAI2O43623 268 aa10.28□□□□□ -0.76
VPS4A-204ENST00000566354 PIP4P2Q8N4L2 257 aa10.28□□□□□ -0.76
VPS4A-204ENST00000566354 C21orf62Q9NYP8 219 aa10.28□□□□□ -0.76
VPS4A-204ENST00000566354 CCDC168Q8NDH2 2452 aa10.28□□□□□ -0.76
VPS4A-204ENST00000566354 GAGE12HA6NDE8 117 aa10.28□□□□□ -0.76
VPS4A-204ENST00000566354 PAX8Q06710 450 aa10.28□□□□□ -0.76
VPS4A-204ENST00000566354 BOD1L2Q8IYS8 172 aa10.28□□□□□ -0.76
VPS4A-204ENST00000566354 TTC9CQ8N5M4 171 aa10.28□□□□□ -0.76
VPS4A-204ENST00000566354 ZNF418Q8TF45 676 aaPredicted RBP10.28□□□□□ -0.76
VPS4A-204ENST00000566354 THYN1Q9P016 225 aa10.28□□□□□ -0.76
VPS4A-204ENST00000566354 ZANQ9Y493 2812 aa10.27□□□□□ -0.76
VPS4A-204ENST00000566354 IGKV2-40A0A087WW87 121 aaPredicted RBP10.27□□□□□ -0.77
VPS4A-204ENST00000566354 TRAV8-6A0A0B4J262 113 aa10.27□□□□□ -0.77
VPS4A-204ENST00000566354 F8W735 103 aaPredicted RBP10.27□□□□□ -0.77
VPS4A-204ENST00000566354 IGKV2D-40P01614 121 aaPredicted RBP10.27□□□□□ -0.77
VPS4A-204ENST00000566354 EGR2P11161 476 aaPredicted RBP10.27□□□□□ -0.77
VPS4A-204ENST00000566354 CKS2P33552 79 aa10.27□□□□□ -0.77
VPS4A-204ENST00000566354 HES1Q14469 280 aa10.27□□□□□ -0.77
VPS4A-204ENST00000566354 GTSF1LQ9H1H1 148 aa10.27□□□□□ -0.77
VPS4A-204ENST00000566354 TRAV25A0A0B4J276 109 aa10.27□□□□□ -0.77
VPS4A-204ENST00000566354 SIVA1O15304 175 aa10.27□□□□□ -0.77
VPS4A-204ENST00000566354 SCGB2A1O75556 95 aa10.27□□□□□ -0.77
VPS4A-204ENST00000566354 CACNG7P62955 275 aa10.27□□□□□ -0.77
VPS4A-204ENST00000566354 FOXE3Q13461 319 aa10.27□□□□□ -0.77
VPS4A-204ENST00000566354 TWIST1Q15672 202 aa10.27□□□□□ -0.77
VPS4A-204ENST00000566354 OR9G4Q8NGQ1 327 aa10.27□□□□□ -0.77
VPS4A-204ENST00000566354 ARPC1AQ92747 370 aa10.27□□□□□ -0.77
VPS4A-204ENST00000566354 NPFFR1Q9GZQ6 430 aa10.27□□□□□ -0.77
VPS4A-204ENST00000566354 RABAC1Q9UI14 185 aa10.27□□□□□ -0.77
VPS4A-204ENST00000566354 A6NDN8 102 aa10.26□□□□□ -0.77
VPS4A-204ENST00000566354 K7EP34 96 aa10.26□□□□□ -0.77
VPS4A-204ENST00000566354 ZNF207O43670 478 aaKnown RBP10.26□□□□□ -0.77
VPS4A-204ENST00000566354 IFI27L1Q96BM0 104 aa10.26□□□□□ -0.77
VPS4A-204ENST00000566354 ERG28Q9UKR5 140 aa10.26□□□□□ -0.77
VPS4A-204ENST00000566354 ODF3BA8MYP8 253 aa10.25□□□□□ -0.77
VPS4A-204ENST00000566354 M0R1W7 72 aa10.25□□□□□ -0.77
VPS4A-204ENST00000566354 IGLC6P0CF74 106 aa10.25□□□□□ -0.77
VPS4A-204ENST00000566354 RPL32P62910 135 aaKnown RBP10.25□□□□□ -0.77
VPS4A-204ENST00000566354 SRSF2Q01130 221 aaKnown RBP10.25□□□□□ -0.77
VPS4A-204ENST00000566354 NPYP01303 97 aa10.25□□□□□ -0.77
VPS4A-204ENST00000566354 PRTN3P24158 256 aa10.25□□□□□ -0.77
VPS4A-204ENST00000566354 H3BRM9 83 aa10.24□□□□□ -0.77
VPS4A-204ENST00000566354 DEFB113Q30KQ7 82 aa10.24□□□□□ -0.77
VPS4A-204ENST00000566354 PDZD2O15018 2839 aa10.24□□□□□ -0.77
VPS4A-204ENST00000566354 CTSGP08311 255 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms