RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 GNG4P50150 75 aa15.06■□□□□ 0
CLN3-212ENST00000564574 CEBPGP53567 150 aa15.06■□□□□ 0
CLN3-212ENST00000564574 FAM74A3Q4VXF1 159 aa15.06■□□□□ 0
CLN3-212ENST00000564574 GFI1BQ5VTD9 330 aa15.06■□□□□ 0
CLN3-212ENST00000564574 ASCL2Q99929 193 aa15.06■□□□□ 0
CLN3-212ENST00000564574 TRAV12-2A0A075B6T6 113 aa15.05■□□□□ -0
CLN3-212ENST00000564574 ZNF674Q2M3X9 581 aa15.05■□□□□ -0
CLN3-212ENST00000564574 CENPWQ5EE01 88 aa15.05■□□□□ -0
CLN3-212ENST00000564574 CSNK1G2-AS1Q8NCQ2 148 aa15.05■□□□□ -0
CLN3-212ENST00000564574 C8orf49Q96NF6 230 aa15.05■□□□□ -0
CLN3-212ENST00000564574 B9D2Q9BPU9 175 aa15.05■□□□□ -0
CLN3-212ENST00000564574 J3KRW8 73 aa15.04■□□□□ -0
CLN3-212ENST00000564574 PRR9Q5T870 116 aa15.04■□□□□ -0
CLN3-212ENST00000564574 Q6AWC8 147 aa15.04■□□□□ -0
CLN3-212ENST00000564574 TMEM256Q8N2U0 113 aa15.04■□□□□ -0
CLN3-212ENST00000564574 SMIM7Q9BQ49 75 aa15.04■□□□□ -0
CLN3-212ENST00000564574 MLST8Q9BVC4 326 aa15.04■□□□□ -0
CLN3-212ENST00000564574 TP53TG1Q9Y2A0 90 aa15.04■□□□□ -0
CLN3-212ENST00000564574 GOLT1BQ9Y3E0 138 aa15.04■□□□□ -0
CLN3-212ENST00000564574 ZNF727A8MUV8 499 aa15.03■□□□□ -0
CLN3-212ENST00000564574 RNASE4P34096 147 aaKnown RBP15.03■□□□□ -0
CLN3-212ENST00000564574 BTN1A1Q13410 526 aa15.03■□□□□ -0
CLN3-212ENST00000564574 KIR3DS1Q14943 382 aa15.03■□□□□ -0
CLN3-212ENST00000564574 SBSPONQ8IVN8 264 aa15.03■□□□□ -0
CLN3-212ENST00000564574 RCHY1Q96PM5 261 aa15.03■□□□□ -0
CLN3-212ENST00000564574 NIPSNAP3BQ9BS92 247 aa15.03■□□□□ -0
CLN3-212ENST00000564574 TRBV20OR9-2A0A075B6H5 130 aa15.02■□□□□ -0
CLN3-212ENST00000564574 TRAV21A0A0B4J279 112 aa15.02■□□□□ -0
CLN3-212ENST00000564574 GCGP01275 180 aa15.02■□□□□ -0
CLN3-212ENST00000564574 DEFB135Q30KP9 77 aa15.02■□□□□ -0
CLN3-212ENST00000564574 SOHLH1Q5JUK2 328 aa15.02■□□□□ -0
CLN3-212ENST00000564574 RNF183Q96D59 192 aa15.02■□□□□ -0
CLN3-212ENST00000564574 BIN3Q9NQY0 253 aa15.02■□□□□ -0
CLN3-212ENST00000564574 LY96Q9Y6Y9 160 aa15.02■□□□□ -0
CLN3-212ENST00000564574 TRAV12-3A0A0B4J271 114 aa15.01□□□□□ -0.01
CLN3-212ENST00000564574 ZNF324O75467 553 aaPredicted RBP15.01□□□□□ -0.01
CLN3-212ENST00000564574 IGLV2-8P01709 118 aa15.01□□□□□ -0.01
CLN3-212ENST00000564574 SFTA3P0C7M3 94 aa15.01□□□□□ -0.01
CLN3-212ENST00000564574 ZNF705AQ6ZN79 300 aaPredicted RBP15.01□□□□□ -0.01
CLN3-212ENST00000564574 C1orf158Q8N1D5 194 aa15.01□□□□□ -0.01
CLN3-212ENST00000564574 ZC2HC1AQ96GY0 325 aa15.01□□□□□ -0.01
CLN3-212ENST00000564574 SPATA25Q9BR10 227 aa15.01□□□□□ -0.01
CLN3-212ENST00000564574 TM2D3Q9BRN9 247 aa15.01□□□□□ -0.01
CLN3-212ENST00000564574 H7BYZ3 331 aa15□□□□□ -0.01
CLN3-212ENST00000564574 SPRY2O43597 315 aa15□□□□□ -0.01
CLN3-212ENST00000564574 PFN1P07737 140 aaKnown RBP15□□□□□ -0.01
CLN3-212ENST00000564574 NHLRC2Q8NBF2 726 aa15□□□□□ -0.01
CLN3-212ENST00000564574 TMEM208Q9BTX3 173 aa15□□□□□ -0.01
CLN3-212ENST00000564574 FABP5P3A8MUU1 101 aa14.99□□□□□ -0.01
CLN3-212ENST00000564574 RBMY1A1P0DJD3 496 aaKnown RBP14.99□□□□□ -0.01
CLN3-212ENST00000564574 RBMY1CP0DJD4 496 aa14.99□□□□□ -0.01
CLN3-212ENST00000564574 ZNF80P51504 273 aaPredicted RBP14.99□□□□□ -0.01
CLN3-212ENST00000564574 RBMY1FQ15415 496 aaKnown RBP14.99□□□□□ -0.01
CLN3-212ENST00000564574 MGST1P10620 155 aaKnown RBP14.98□□□□□ -0.01
CLN3-212ENST00000564574 NDUFA5Q16718 116 aa14.98□□□□□ -0.01
CLN3-212ENST00000564574 FAM162BQ5T6X4 162 aa14.98□□□□□ -0.01
CLN3-212ENST00000564574 LINC01587Q99440 93 aa14.98□□□□□ -0.01
CLN3-212ENST00000564574 NEU1Q99519 415 aa14.98□□□□□ -0.01
CLN3-212ENST00000564574 PYGO2Q9BRQ0 406 aa14.98□□□□□ -0.01
CLN3-212ENST00000564574 LINC00467Q9BRT7 94 aa14.98□□□□□ -0.01
CLN3-212ENST00000564574 ZMAT4Q9H898 229 aa14.98□□□□□ -0.01
CLN3-212ENST00000564574 NAT8Q9UHE5 227 aa14.98□□□□□ -0.01
CLN3-212ENST00000564574 TMEM218A2RU14 115 aa14.97□□□□□ -0.01
CLN3-212ENST00000564574 PGPEP1LA6NFU8 196 aa14.97□□□□□ -0.01
CLN3-212ENST00000564574 TMEM241Q24JQ0 296 aa14.97□□□□□ -0.01
CLN3-212ENST00000564574 OCC1Q8TAD7 63 aa14.97□□□□□ -0.01
CLN3-212ENST00000564574 OVOL2Q9BRP0 275 aa14.97□□□□□ -0.01
CLN3-212ENST00000564574 SMIM9A6NGZ8 99 aa14.96□□□□□ -0.01
CLN3-212ENST00000564574 NHLRC4P0CG21 123 aaPredicted RBP14.96□□□□□ -0.01
CLN3-212ENST00000564574 CRIP1P50238 77 aa14.96□□□□□ -0.01
CLN3-212ENST00000564574 IGHV3OR16-12A0A075B7B8 117 aa14.95□□□□□ -0.02
CLN3-212ENST00000564574 IGHV1OR15-1A0A075B7D0 117 aa14.95□□□□□ -0.02
CLN3-212ENST00000564574 SH2D1AO60880 128 aa14.95□□□□□ -0.02
CLN3-212ENST00000564574 FAM159AQ6UWV7 190 aa14.95□□□□□ -0.02
CLN3-212ENST00000564574 OR11H2Q8NH07 326 aa14.95□□□□□ -0.02
CLN3-212ENST00000564574 KCNS1Q96KK3 526 aa14.95□□□□□ -0.02
CLN3-212ENST00000564574 TGP01266 2768 aa14.95□□□□□ -0.02
CLN3-212ENST00000564574 PRR27Q6MZM9 219 aa14.94□□□□□ -0.02
CLN3-212ENST00000564574 Q6ZQT7 251 aa14.94□□□□□ -0.02
CLN3-212ENST00000564574 LINC01551Q86U37 167 aa14.94□□□□□ -0.02
CLN3-212ENST00000564574 DAZAP1Q96EP5 407 aaKnown RBP14.94□□□□□ -0.02
CLN3-212ENST00000564574 X6R8D5 127 aa14.94□□□□□ -0.02
CLN3-212ENST00000564574 K7EN84 100 aa14.93□□□□□ -0.02
CLN3-212ENST00000564574 MIFP14174 115 aa14.93□□□□□ -0.02
CLN3-212ENST00000564574 TDRG1Q3Y452 100 aa14.93□□□□□ -0.02
CLN3-212ENST00000564574 SDF2L1Q9HCN8 221 aa14.93□□□□□ -0.02
CLN3-212ENST00000564574 RETNQ9HD89 108 aa14.93□□□□□ -0.02
CLN3-212ENST00000564574 C19orf71A6NCJ1 209 aa14.92□□□□□ -0.02
CLN3-212ENST00000564574 F8W036 122 aa14.92□□□□□ -0.02
CLN3-212ENST00000564574 RPL23P62829 140 aaKnown RBP14.92□□□□□ -0.02
CLN3-212ENST00000564574 RRN3P1Q2M238 152 aa14.92□□□□□ -0.02
CLN3-212ENST00000564574 ANXA2RQ3ZCQ2 193 aa14.92□□□□□ -0.02
CLN3-212ENST00000564574 LINC01559Q495D7 138 aa14.92□□□□□ -0.02
CLN3-212ENST00000564574 SEC11CQ9BY50 192 aa14.92□□□□□ -0.02
CLN3-212ENST00000564574 NAGKQ9UJ70 344 aa14.92□□□□□ -0.02
CLN3-212ENST00000564574 PRKDCP78527 4128 aaKnown RBP14.92□□□□□ -0.02
CLN3-212ENST00000564574 PNRC1Q12796 327 aaPredicted RBP14.91□□□□□ -0.02
CLN3-212ENST00000564574 OR5I1Q13606 314 aa14.91□□□□□ -0.02
CLN3-212ENST00000564574 MUC21Q5SSG8 566 aa14.91□□□□□ -0.02
CLN3-212ENST00000564574 ZNF493Q6ZR52 646 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms