RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 PTTG2Q9NZH5 202 aa11.85□□□□□ -0.51
VPS9D1-203ENST00000563798 HSPB11Q9Y547 144 aa11.85□□□□□ -0.51
VPS9D1-203ENST00000563798 LENEPQ9Y5L5 61 aa11.85□□□□□ -0.51
VPS9D1-203ENST00000563798 OR7C2O60412 319 aa11.84□□□□□ -0.51
VPS9D1-203ENST00000563798 MPC2O95563 127 aa11.84□□□□□ -0.51
VPS9D1-203ENST00000563798 CSN1S1P47710 185 aa11.84□□□□□ -0.51
VPS9D1-203ENST00000563798 SLAQ13239 276 aa11.84□□□□□ -0.51
VPS9D1-203ENST00000563798 PET100P0DJ07 73 aa11.83□□□□□ -0.52
VPS9D1-203ENST00000563798 RANP62826 216 aaKnown RBP11.83□□□□□ -0.52
VPS9D1-203ENST00000563798 Q6AWC8 147 aa11.83□□□□□ -0.52
VPS9D1-203ENST00000563798 Q8TAT8 98 aa11.83□□□□□ -0.52
VPS9D1-203ENST00000563798 TMED6Q8WW62 240 aa11.83□□□□□ -0.52
VPS9D1-203ENST00000563798 ARPC5LQ9BPX5 153 aa11.83□□□□□ -0.52
VPS9D1-203ENST00000563798 PRO0255Q9UI72 69 aa11.83□□□□□ -0.52
VPS9D1-203ENST00000563798 PAX4O43316 350 aa11.82□□□□□ -0.52
VPS9D1-203ENST00000563798 TAS2R45P59539 299 aa11.82□□□□□ -0.52
VPS9D1-203ENST00000563798 UBE2L3P68036 154 aaKnown RBP11.82□□□□□ -0.52
VPS9D1-203ENST00000563798 ZNF415Q09FC8 603 aa11.82□□□□□ -0.52
VPS9D1-203ENST00000563798 KHDC3LQ587J8 217 aa11.82□□□□□ -0.52
VPS9D1-203ENST00000563798 FFAR4Q5NUL3 377 aa11.82□□□□□ -0.52
VPS9D1-203ENST00000563798 ARL6IP6Q8N6S5 226 aa11.82□□□□□ -0.52
VPS9D1-203ENST00000563798 KRTAP4-5Q9BYR2 181 aa11.82□□□□□ -0.52
VPS9D1-203ENST00000563798 ICOSQ9Y6W8 199 aa11.82□□□□□ -0.52
VPS9D1-203ENST00000563798 DIRC3C9JPN6 131 aa11.81□□□□□ -0.52
VPS9D1-203ENST00000563798 IFNA5P01569 189 aa11.81□□□□□ -0.52
VPS9D1-203ENST00000563798 RPL12P30050 165 aaKnown RBP11.81□□□□□ -0.52
VPS9D1-203ENST00000563798 CRYBA4P53673 196 aa11.81□□□□□ -0.52
VPS9D1-203ENST00000563798 FHL2Q14192 279 aa11.81□□□□□ -0.52
VPS9D1-203ENST00000563798 IQCF2Q8IXL9 164 aa11.81□□□□□ -0.52
VPS9D1-203ENST00000563798 MRPL16Q9NX20 251 aaKnown RBP11.81□□□□□ -0.52
VPS9D1-203ENST00000563798 SIVA1O15304 175 aa11.8□□□□□ -0.52
VPS9D1-203ENST00000563798 TDRG1Q3Y452 100 aa11.8□□□□□ -0.52
VPS9D1-203ENST00000563798 Q6ZRN7 208 aaPredicted RBP11.8□□□□□ -0.52
VPS9D1-203ENST00000563798 SPATA12Q7Z6I5 190 aa11.8□□□□□ -0.52
VPS9D1-203ENST00000563798 SCGB1C1Q8TD33 95 aa11.8□□□□□ -0.52
VPS9D1-203ENST00000563798 RASL10AQ92737 203 aa11.8□□□□□ -0.52
VPS9D1-203ENST00000563798 HHLA3Q9XRX5 114 aa11.8□□□□□ -0.52
VPS9D1-203ENST00000563798 SSNA1O43805 119 aa11.79□□□□□ -0.52
VPS9D1-203ENST00000563798 DEFA1P59665 94 aa11.79□□□□□ -0.52
VPS9D1-203ENST00000563798 DEFA3P59666 94 aa11.79□□□□□ -0.52
VPS9D1-203ENST00000563798 MRPL23Q16540 153 aaKnown RBP11.79□□□□□ -0.52
VPS9D1-203ENST00000563798 SPXQ9BT56 116 aa11.79□□□□□ -0.52
VPS9D1-203ENST00000563798 OTORQ9NRC9 128 aa11.79□□□□□ -0.52
VPS9D1-203ENST00000563798 MDFICQ9P1T7 246 aa11.79□□□□□ -0.52
VPS9D1-203ENST00000563798 IGHV3-53P01767 116 aa11.78□□□□□ -0.52
VPS9D1-203ENST00000563798 LINC00315P59091 139 aa11.78□□□□□ -0.52
VPS9D1-203ENST00000563798 OR10G4Q8NGN3 311 aa11.78□□□□□ -0.52
VPS9D1-203ENST00000563798 WFDC1Q9HC57 220 aa11.78□□□□□ -0.52
VPS9D1-203ENST00000563798 MBD2Q9UBB5 411 aa11.78□□□□□ -0.52
VPS9D1-203ENST00000563798 APOBP04114 4563 aaKnown RBP11.78□□□□□ -0.52
VPS9D1-203ENST00000563798 DNAH5Q8TE73 4624 aa11.78□□□□□ -0.52
VPS9D1-203ENST00000563798 TRGV11A0A075B6L2 103 aa11.77□□□□□ -0.53
VPS9D1-203ENST00000563798 NXPH4O95158 308 aa11.77□□□□□ -0.53
VPS9D1-203ENST00000563798 KRTAP10-2P60368 255 aa11.77□□□□□ -0.53
VPS9D1-203ENST00000563798 MUC21Q5SSG8 566 aa11.77□□□□□ -0.53
VPS9D1-203ENST00000563798 LYPD5Q6UWN5 251 aa11.77□□□□□ -0.53
VPS9D1-203ENST00000563798 PQLC2Q6ZP29 291 aa11.77□□□□□ -0.53
VPS9D1-203ENST00000563798 C8orf49Q96NF6 230 aa11.77□□□□□ -0.53
VPS9D1-203ENST00000563798 SMIM3Q9BZL3 60 aa11.77□□□□□ -0.53
VPS9D1-203ENST00000563798 ACOT6Q3I5F7 207 aaPredicted RBP11.76□□□□□ -0.53
VPS9D1-203ENST00000563798 FAM74A1Q5RGS3 127 aa11.76□□□□□ -0.53
VPS9D1-203ENST00000563798 FAM159AQ6UWV7 190 aa11.76□□□□□ -0.53
VPS9D1-203ENST00000563798 NEGR1Q7Z3B1 354 aa11.76□□□□□ -0.53
VPS9D1-203ENST00000563798 PGPA6NDG6 321 aa11.75□□□□□ -0.53
VPS9D1-203ENST00000563798 TRGV4A0A0C4DH28 118 aa11.74□□□□□ -0.53
VPS9D1-203ENST00000563798 K7EP13 123 aa11.74□□□□□ -0.53
VPS9D1-203ENST00000563798 TMEM183BQ1AE95 376 aa11.74□□□□□ -0.53
VPS9D1-203ENST00000563798 TMEM183AQ8IXX5 376 aa11.74□□□□□ -0.53
VPS9D1-203ENST00000563798 MAPKAPK5-AS1Q8N8E1 139 aa11.74□□□□□ -0.53
VPS9D1-203ENST00000563798 CMTM2Q8TAZ6 248 aa11.74□□□□□ -0.53
VPS9D1-203ENST00000563798 ZNF479Q96JC4 524 aa11.74□□□□□ -0.53
VPS9D1-203ENST00000563798 HYLS1Q96M11 299 aa11.74□□□□□ -0.53
VPS9D1-203ENST00000563798 A0A1W2PPV4 95 aa11.73□□□□□ -0.53
VPS9D1-203ENST00000563798 K7EQD1 137 aa11.73□□□□□ -0.53
VPS9D1-203ENST00000563798 ORM1P02763 201 aa11.73□□□□□ -0.53
VPS9D1-203ENST00000563798 Q8N1X5 172 aa11.73□□□□□ -0.53
VPS9D1-203ENST00000563798 TVP23CQ96ET8 276 aa11.73□□□□□ -0.53
VPS9D1-203ENST00000563798 TRAV4A0A0B4J268 109 aa11.72□□□□□ -0.53
VPS9D1-203ENST00000563798 TRAV21A0A0B4J279 112 aa11.72□□□□□ -0.53
VPS9D1-203ENST00000563798 IGHV3-16A0A0C4DH30 117 aa11.72□□□□□ -0.53
VPS9D1-203ENST00000563798 EIF3GO75821 320 aaKnown RBP eCLIP11.72□□□□□ -0.53
VPS9D1-203ENST00000563798 SFTA3P0C7M3 94 aa11.72□□□□□ -0.53
VPS9D1-203ENST00000563798 RAB2AP61019 212 aa11.72□□□□□ -0.53
VPS9D1-203ENST00000563798 GOLT1AQ6ZVE7 132 aa11.72□□□□□ -0.53
VPS9D1-203ENST00000563798 OR2G3Q8NGZ4 309 aa11.72□□□□□ -0.53
VPS9D1-203ENST00000563798 SUN5Q8TC36 379 aa11.72□□□□□ -0.53
VPS9D1-203ENST00000563798 SERTM2A0A1B0GWG4 89 aa11.71□□□□□ -0.53
VPS9D1-203ENST00000563798 M0R2P5 195 aa11.71□□□□□ -0.53
VPS9D1-203ENST00000563798 SRIP30626 198 aa11.71□□□□□ -0.53
VPS9D1-203ENST00000563798 NFE4Q86UQ8 179 aa11.71□□□□□ -0.53
VPS9D1-203ENST00000563798 OR10G9Q8NGN4 311 aa11.71□□□□□ -0.53
VPS9D1-203ENST00000563798 OR10G7Q8NGN6 311 aa11.71□□□□□ -0.53
VPS9D1-203ENST00000563798 KCNS1Q96KK3 526 aa11.71□□□□□ -0.53
VPS9D1-203ENST00000563798 PGPEP1Q9NXJ5 209 aa11.71□□□□□ -0.53
VPS9D1-203ENST00000563798 TRAV9-2A0A087WT02 112 aa11.7□□□□□ -0.54
VPS9D1-203ENST00000563798 GNRH2O43555 120 aa11.7□□□□□ -0.54
VPS9D1-203ENST00000563798 STAG3L2P0CL84 134 aa11.7□□□□□ -0.54
VPS9D1-203ENST00000563798 STAG3L3P0CL85 134 aa11.7□□□□□ -0.54
VPS9D1-203ENST00000563798 GYPEP15421 78 aa11.7□□□□□ -0.54
VPS9D1-203ENST00000563798 PSMG3Q9BT73 122 aaPredicted RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 172.1 ms