RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 IFI27P40305 119 aaPredicted RBP8.88□□□□□ -0.99
CUX1-218ENST00000560541 CSN1S1P47710 185 aa8.88□□□□□ -0.99
CUX1-218ENST00000560541 HES1Q14469 280 aa8.88□□□□□ -0.99
CUX1-218ENST00000560541 FABP5P3A8MUU1 101 aa8.87□□□□□ -0.99
CUX1-218ENST00000560541 KLRD1Q13241 179 aa8.87□□□□□ -0.99
CUX1-218ENST00000560541 RIGQ13278 110 aa8.87□□□□□ -0.99
CUX1-218ENST00000560541 SFTA2Q6UW10 78 aa8.87□□□□□ -0.99
CUX1-218ENST00000560541 PTH2Q96A98 100 aa8.87□□□□□ -0.99
CUX1-218ENST00000560541 H3BRN7 92 aa8.87□□□□□ -0.99
CUX1-218ENST00000560541 HOXB4P17483 251 aaPredicted RBP8.87□□□□□ -0.99
CUX1-218ENST00000560541 IGFL4Q6B9Z1 124 aa8.87□□□□□ -0.99
CUX1-218ENST00000560541 ZFHX3Q15911 3703 aa8.87□□□□□ -0.99
CUX1-218ENST00000560541 PTPRQQ9UMZ3 2332 aa8.87□□□□□ -0.99
CUX1-218ENST00000560541 A0A087WX48 190 aa8.87□□□□□ -0.99
CUX1-218ENST00000560541 IGHV3-35A0A0C4DH35 117 aa8.87□□□□□ -0.99
CUX1-218ENST00000560541 SMAD7O15105 426 aaKnown RBP8.87□□□□□ -0.99
CUX1-218ENST00000560541 GRNP28799 593 aaKnown RBP8.87□□□□□ -0.99
CUX1-218ENST00000560541 TMEM75Q8N9X5 138 aa8.87□□□□□ -0.99
CUX1-218ENST00000560541 HRNRQ86YZ3 2850 aaPredicted RBP8.86□□□□□ -0.99
CUX1-218ENST00000560541 IGKV2-40A0A087WW87 121 aaPredicted RBP8.86□□□□□ -0.99
CUX1-218ENST00000560541 D6R8Y8 96 aa8.86□□□□□ -0.99
CUX1-218ENST00000560541 IGKV2D-40P01614 121 aaPredicted RBP8.86□□□□□ -0.99
CUX1-218ENST00000560541 CD3EP07766 207 aa8.86□□□□□ -0.99
CUX1-218ENST00000560541 Q6AWC8 147 aa8.86□□□□□ -0.99
CUX1-218ENST00000560541 AMN1Q8IY45 258 aa8.86□□□□□ -0.99
CUX1-218ENST00000560541 ZNF414Q96IQ9 312 aa8.86□□□□□ -0.99
CUX1-218ENST00000560541 RAX2Q96IS3 184 aa8.86□□□□□ -0.99
CUX1-218ENST00000560541 VCX2Q9H322 139 aa8.86□□□□□ -0.99
CUX1-218ENST00000560541 CT45A10P0DMU9 189 aa8.86□□□□□ -0.99
CUX1-218ENST00000560541 FOXI1Q12951 378 aa8.86□□□□□ -0.99
CUX1-218ENST00000560541 LYZL1Q6UWQ5 148 aa8.86□□□□□ -0.99
CUX1-218ENST00000560541 ZNF747Q9BV97 191 aa8.86□□□□□ -0.99
CUX1-218ENST00000560541 Q8TAT8 98 aa8.85□□□□□ -0.99
CUX1-218ENST00000560541 IGF2RP11717 2491 aa8.85□□□□□ -0.99
CUX1-218ENST00000560541 SMKR1H3BMG3 65 aa8.85□□□□□ -0.99
CUX1-218ENST00000560541 FAM159AQ6UWV7 190 aa8.85□□□□□ -0.99
CUX1-218ENST00000560541 LINC01545Q5VT33 79 aa8.85□□□□□ -0.99
CUX1-218ENST00000560541 WFDC3Q8IUB2 231 aa8.85□□□□□ -0.99
CUX1-218ENST00000560541 CSDC2Q9Y534 153 aaKnown RBP8.85□□□□□ -0.99
CUX1-218ENST00000560541 MRPS12O15235 138 aaKnown RBP8.84□□□□□ -0.99
CUX1-218ENST00000560541 NBR2O15453 112 aa8.84□□□□□ -0.99
CUX1-218ENST00000560541 MRPL23Q16540 153 aaKnown RBP8.84□□□□□ -0.99
CUX1-218ENST00000560541 NFE4Q86UQ8 179 aa8.84□□□□□ -0.99
CUX1-218ENST00000560541 COL6A6A6NMZ7 2263 aa8.84□□□□□ -0.99
CUX1-218ENST00000560541 A0A096LNJ9 63 aa8.84□□□□□ -0.99
CUX1-218ENST00000560541 LINC01548A6NM66 108 aa8.84□□□□□ -0.99
CUX1-218ENST00000560541 LY6LH3BQJ8 138 aa8.84□□□□□ -0.99
CUX1-218ENST00000560541 ZNF672Q499Z4 452 aaPredicted RBP8.84□□□□□ -0.99
CUX1-218ENST00000560541 C5orf47Q569G3 176 aa8.84□□□□□ -0.99
CUX1-218ENST00000560541 AAMDCQ9H7C9 122 aa8.84□□□□□ -0.99
CUX1-218ENST00000560541 SIGLEC8Q9NYZ4 499 aa8.84□□□□□ -0.99
CUX1-218ENST00000560541 NCBP2LA6PVI3 153 aaKnown RBP8.83□□□□□ -1
CUX1-218ENST00000560541 SH2D1AO60880 128 aa8.83□□□□□ -1
CUX1-218ENST00000560541 HLA-DMBP28068 263 aa8.83□□□□□ -1
CUX1-218ENST00000560541 FCER1GP30273 86 aa8.83□□□□□ -1
CUX1-218ENST00000560541 UBTD1Q9HAC8 227 aa8.83□□□□□ -1
CUX1-218ENST00000560541 IGLL5B9A064 214 aa8.83□□□□□ -1
CUX1-218ENST00000560541 OR4X2Q8NGF9 303 aa8.83□□□□□ -1
CUX1-218ENST00000560541 NDPQ00604 133 aa8.83□□□□□ -1
CUX1-218ENST00000560541 MEIG1Q5JSS6 88 aa8.83□□□□□ -1
CUX1-218ENST00000560541 TTC32Q5I0X7 151 aa8.82□□□□□ -1
CUX1-218ENST00000560541 FANCD2OSQ96PS1 177 aa8.82□□□□□ -1
CUX1-218ENST00000560541 DPM3Q9P2X0 92 aa8.82□□□□□ -1
CUX1-218ENST00000560541 LOC107984640A0A0U1RRK4 108 aa8.82□□□□□ -1
CUX1-218ENST00000560541 CACNG7P62955 275 aa8.82□□□□□ -1
CUX1-218ENST00000560541 AJUBAQ96IF1 538 aa8.82□□□□□ -1
CUX1-218ENST00000560541 COL25A1Q9BXS0 654 aaPredicted RBP8.82□□□□□ -1
CUX1-218ENST00000560541 TRBV6-1A0A0K0K1D8 114 aa8.81□□□□□ -1
CUX1-218ENST00000560541 WI2-2373I1.2A0A1W2PRP0 233 aa8.81□□□□□ -1
CUX1-218ENST00000560541 NDUFV3P56181 108 aaKnown RBP8.81□□□□□ -1
CUX1-218ENST00000560541 PIP4P2Q8N4L2 257 aa8.81□□□□□ -1
CUX1-218ENST00000560541 F8W735 103 aaPredicted RBP8.81□□□□□ -1
CUX1-218ENST00000560541 EGR2P11161 476 aaPredicted RBP8.81□□□□□ -1
CUX1-218ENST00000560541 ZNF80P51504 273 aaPredicted RBP8.81□□□□□ -1
CUX1-218ENST00000560541 TWIST1Q15672 202 aa8.81□□□□□ -1
CUX1-218ENST00000560541 MRPL51Q4U2R6 128 aaKnown RBP8.81□□□□□ -1
CUX1-218ENST00000560541 LYPD1Q8N2G4 141 aa8.81□□□□□ -1
CUX1-218ENST00000560541 OR9G4Q8NGQ1 327 aa8.81□□□□□ -1
CUX1-218ENST00000560541 CFHR4Q92496 578 aa8.81□□□□□ -1
CUX1-218ENST00000560541 E9PLD3 99 aa8.81□□□□□ -1
CUX1-218ENST00000560541 FAM104BQ5XKR9 115 aa8.81□□□□□ -1
CUX1-218ENST00000560541 ORMDL3Q8N138 153 aa8.81□□□□□ -1
CUX1-218ENST00000560541 MSRB1Q9NZV6 116 aa8.81□□□□□ -1
CUX1-218ENST00000560541 PRO0461Q9UI25 63 aa8.81□□□□□ -1
CUX1-218ENST00000560541 MFAP4P55083 255 aa8.8□□□□□ -1
CUX1-218ENST00000560541 GAGE2BQ13066 116 aa8.8□□□□□ -1
CUX1-218ENST00000560541 GAGE2EQ4V326 116 aa8.8□□□□□ -1
CUX1-218ENST00000560541 GAGE2DQ9UEU5 116 aa8.8□□□□□ -1
CUX1-218ENST00000560541 GAS8-AS1O95177 125 aa8.8□□□□□ -1
CUX1-218ENST00000560541 NPYP01303 97 aa8.8□□□□□ -1
CUX1-218ENST00000560541 EVI2AP22794 236 aa8.8□□□□□ -1
CUX1-218ENST00000560541 CKS2P33552 79 aa8.8□□□□□ -1
CUX1-218ENST00000560541 DYNAPQ8N1N2 210 aa8.8□□□□□ -1
CUX1-218ENST00000560541 RNF5Q99942 180 aa8.8□□□□□ -1
CUX1-218ENST00000560541 C21orf62Q9NYP8 219 aa8.8□□□□□ -1
CUX1-218ENST00000560541 IGLV11-55A0A075B6I3 123 aa8.79□□□□□ -1
CUX1-218ENST00000560541 ZNF502Q8TBZ5 544 aa8.79□□□□□ -1
CUX1-218ENST00000560541 PRR25Q96S07 402 aa8.79□□□□□ -1
CUX1-218ENST00000560541 IGHV3OR16-13A0A075B7E8 117 aa8.79□□□□□ -1
CUX1-218ENST00000560541 IGHV3-74A0A0B4J1X5 117 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms