RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 Q5BKY6 102 aa12.23□□□□□ -0.45
HDDC3-205ENST00000559898 ZNF680Q8NEM1 530 aa12.23□□□□□ -0.45
HDDC3-205ENST00000559898 HYLS1Q96M11 299 aa12.23□□□□□ -0.45
HDDC3-205ENST00000559898 KCNIP2Q9NS61 270 aa12.23□□□□□ -0.45
HDDC3-205ENST00000559898 MDFICQ9P1T7 246 aa12.23□□□□□ -0.45
HDDC3-205ENST00000559898 RPH3ALQ9UNE2 315 aa12.23□□□□□ -0.45
HDDC3-205ENST00000559898 DIRC3C9JPN6 131 aa12.22□□□□□ -0.45
HDDC3-205ENST00000559898 SCGB1C1Q8TD33 95 aa12.22□□□□□ -0.45
HDDC3-205ENST00000559898 KRTAP4-5Q9BYR2 181 aa12.22□□□□□ -0.45
HDDC3-205ENST00000559898 IFNA5P01569 189 aa12.21□□□□□ -0.45
HDDC3-205ENST00000559898 NMBP08949 121 aa12.21□□□□□ -0.45
HDDC3-205ENST00000559898 MED14OSP0DP75 135 aa12.21□□□□□ -0.45
HDDC3-205ENST00000559898 GNG5P63218 68 aa12.21□□□□□ -0.45
HDDC3-205ENST00000559898 SOHLH1Q5JUK2 328 aa12.21□□□□□ -0.45
HDDC3-205ENST00000559898 TVP23CQ96ET8 276 aa12.21□□□□□ -0.45
HDDC3-205ENST00000559898 PGPA6NDG6 321 aa12.2□□□□□ -0.46
HDDC3-205ENST00000559898 ZNF266Q14584 549 aa12.2□□□□□ -0.46
HDDC3-205ENST00000559898 KHDC3LQ587J8 217 aa12.2□□□□□ -0.46
HDDC3-205ENST00000559898 IBA57Q5T440 356 aaKnown RBP12.2□□□□□ -0.46
HDDC3-205ENST00000559898 C18orf15Q96N68 181 aa12.2□□□□□ -0.46
HDDC3-205ENST00000559898 MRPS16Q9Y3D3 137 aaKnown RBP12.2□□□□□ -0.46
HDDC3-205ENST00000559898 TRAV8-1A0A0A6YYK1 113 aa12.19□□□□□ -0.46
HDDC3-205ENST00000559898 H3BNG1 76 aa12.19□□□□□ -0.46
HDDC3-205ENST00000559898 SFTA3P0C7M3 94 aa12.19□□□□□ -0.46
HDDC3-205ENST00000559898 PET100P0DJ07 73 aa12.19□□□□□ -0.46
HDDC3-205ENST00000559898 FHL2Q14192 279 aa12.19□□□□□ -0.46
HDDC3-205ENST00000559898 SGK494Q96LW2 274 aa12.19□□□□□ -0.46
HDDC3-205ENST00000559898 ABCA13Q86UQ4 5058 aa12.19□□□□□ -0.46
HDDC3-205ENST00000559898 DNAH5Q8TE73 4624 aa12.18□□□□□ -0.46
HDDC3-205ENST00000559898 RBAKDNA6NC62 111 aa12.18□□□□□ -0.46
HDDC3-205ENST00000559898 F6UZH7 168 aa12.18□□□□□ -0.46
HDDC3-205ENST00000559898 CSN1S1P47710 185 aa12.18□□□□□ -0.46
HDDC3-205ENST00000559898 Q6AWC8 147 aa12.18□□□□□ -0.46
HDDC3-205ENST00000559898 LYPD1Q8N2G4 141 aa12.18□□□□□ -0.46
HDDC3-205ENST00000559898 ST6GAL2Q96JF0 529 aa12.18□□□□□ -0.46
HDDC3-205ENST00000559898 C8orf49Q96NF6 230 aa12.18□□□□□ -0.46
HDDC3-205ENST00000559898 ARPC5LQ9BPX5 153 aa12.18□□□□□ -0.46
HDDC3-205ENST00000559898 UPK3BQ9BT76 320 aa12.18□□□□□ -0.46
HDDC3-205ENST00000559898 GNRH2O43555 120 aa12.17□□□□□ -0.46
HDDC3-205ENST00000559898 TMEM183BQ1AE95 376 aa12.17□□□□□ -0.46
HDDC3-205ENST00000559898 GOLT1AQ6ZVE7 132 aa12.17□□□□□ -0.46
HDDC3-205ENST00000559898 TMEM183AQ8IXX5 376 aa12.17□□□□□ -0.46
HDDC3-205ENST00000559898 HSD17B11Q8NBQ5 300 aa12.17□□□□□ -0.46
HDDC3-205ENST00000559898 ZNF479Q96JC4 524 aa12.17□□□□□ -0.46
HDDC3-205ENST00000559898 OTORQ9NRC9 128 aa12.17□□□□□ -0.46
HDDC3-205ENST00000559898 APOBP04114 4563 aaKnown RBP12.16□□□□□ -0.46
HDDC3-205ENST00000559898 TRBV7-9A0A0J9YWB2 115 aa12.16□□□□□ -0.46
HDDC3-205ENST00000559898 CRYBA4P53673 196 aa12.16□□□□□ -0.46
HDDC3-205ENST00000559898 TAS2R45P59539 299 aa12.16□□□□□ -0.46
HDDC3-205ENST00000559898 ZNF415Q09FC8 603 aa12.16□□□□□ -0.46
HDDC3-205ENST00000559898 ACOT6Q3I5F7 207 aaPredicted RBP12.16□□□□□ -0.46
HDDC3-205ENST00000559898 OR10G4Q8NGN3 311 aa12.16□□□□□ -0.46
HDDC3-205ENST00000559898 OR10G9Q8NGN4 311 aa12.16□□□□□ -0.46
HDDC3-205ENST00000559898 OR10G7Q8NGN6 311 aa12.16□□□□□ -0.46
HDDC3-205ENST00000559898 SH3BGRL3Q9H299 93 aa12.16□□□□□ -0.46
HDDC3-205ENST00000559898 NAGKQ9UJ70 344 aa12.16□□□□□ -0.46
HDDC3-205ENST00000559898 TNFRSF18Q9Y5U5 241 aa12.16□□□□□ -0.46
HDDC3-205ENST00000559898 PAX4O43316 350 aa12.15□□□□□ -0.46
HDDC3-205ENST00000559898 ARL14EPLP0DKL9 152 aa12.15□□□□□ -0.46
HDDC3-205ENST00000559898 A0A1W2PPV4 95 aa12.14□□□□□ -0.47
HDDC3-205ENST00000559898 C16orf90A8MZG2 172 aa12.14□□□□□ -0.47
HDDC3-205ENST00000559898 ATP6V0CP27449 155 aa12.14□□□□□ -0.47
HDDC3-205ENST00000559898 FUSP35637 526 aaKnown RBP eCLIP12.14□□□□□ -0.47
HDDC3-205ENST00000559898 KRTAP10-2P60368 255 aa12.14□□□□□ -0.47
HDDC3-205ENST00000559898 BATF3Q9NR55 127 aa12.14□□□□□ -0.47
HDDC3-205ENST00000559898 ZNF80P51504 273 aaPredicted RBP12.13□□□□□ -0.47
HDDC3-205ENST00000559898 C11orf21Q9P2W6 132 aa12.13□□□□□ -0.47
HDDC3-205ENST00000559898 HHLA3Q9XRX5 114 aa12.13□□□□□ -0.47
HDDC3-205ENST00000559898 LOC100131303A0A0U1RQF7 123 aa12.12□□□□□ -0.47
HDDC3-205ENST00000559898 NXPH4O95158 308 aa12.12□□□□□ -0.47
HDDC3-205ENST00000559898 TYMSP04818 313 aa12.12□□□□□ -0.47
HDDC3-205ENST00000559898 STAG3L2P0CL84 134 aa12.12□□□□□ -0.47
HDDC3-205ENST00000559898 STAG3L3P0CL85 134 aa12.12□□□□□ -0.47
HDDC3-205ENST00000559898 CDC34P49427 236 aaPredicted RBP12.12□□□□□ -0.47
HDDC3-205ENST00000559898 LINC00315P59091 139 aa12.12□□□□□ -0.47
HDDC3-205ENST00000559898 PQLC2Q6ZP29 291 aa12.12□□□□□ -0.47
HDDC3-205ENST00000559898 Q6ZRN7 208 aaPredicted RBP12.12□□□□□ -0.47
HDDC3-205ENST00000559898 SPATA12Q7Z6I5 190 aa12.12□□□□□ -0.47
HDDC3-205ENST00000559898 CMTM2Q8TAZ6 248 aa12.12□□□□□ -0.47
HDDC3-205ENST00000559898 RAB24Q969Q5 203 aa12.12□□□□□ -0.47
HDDC3-205ENST00000559898 AQP10Q96PS8 301 aa12.12□□□□□ -0.47
HDDC3-205ENST00000559898 MED28Q9H204 178 aa12.12□□□□□ -0.47
HDDC3-205ENST00000559898 PRO0255Q9UI72 69 aa12.12□□□□□ -0.47
HDDC3-205ENST00000559898 LENEPQ9Y5L5 61 aa12.12□□□□□ -0.47
HDDC3-205ENST00000559898 ICOSQ9Y6W8 199 aa12.12□□□□□ -0.47
HDDC3-205ENST00000559898 IGHV3-16A0A0C4DH30 117 aa12.11□□□□□ -0.47
HDDC3-205ENST00000559898 RNF222A6NCQ9 220 aa12.11□□□□□ -0.47
HDDC3-205ENST00000559898 PTTG1O95997 202 aa12.11□□□□□ -0.47
HDDC3-205ENST00000559898 LYPD5Q6UWN5 251 aa12.11□□□□□ -0.47
HDDC3-205ENST00000559898 FAM159AQ6UWV7 190 aa12.11□□□□□ -0.47
HDDC3-205ENST00000559898 OR2G3Q8NGZ4 309 aa12.11□□□□□ -0.47
HDDC3-205ENST00000559898 TMED6Q8WW62 240 aa12.11□□□□□ -0.47
HDDC3-205ENST00000559898 K7EQD1 137 aa12.1□□□□□ -0.47
HDDC3-205ENST00000559898 GCHFRP30047 84 aa12.1□□□□□ -0.47
HDDC3-205ENST00000559898 TMEM75Q8N9X5 138 aa12.1□□□□□ -0.47
HDDC3-205ENST00000559898 SUN5Q8TC36 379 aa12.1□□□□□ -0.47
HDDC3-205ENST00000559898 RASL10AQ92737 203 aa12.1□□□□□ -0.47
HDDC3-205ENST00000559898 TREM1Q9NP99 234 aa12.1□□□□□ -0.47
HDDC3-205ENST00000559898 TRGV4A0A0C4DH28 118 aa12.09□□□□□ -0.47
HDDC3-205ENST00000559898 G3V3Q6 166 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms