RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 DAZ1Q9NQZ3 744 aaKnown RBP13.52□□□□□ -0.24
SNX1-208ENST00000559844 IGHV7-4-1A0A0J9YVY3 117 aa13.52□□□□□ -0.25
SNX1-208ENST00000559844 F2Z2F3 143 aa13.52□□□□□ -0.25
SNX1-208ENST00000559844 PROK1P58294 105 aa13.52□□□□□ -0.25
SNX1-208ENST00000559844 ERCC8Q13216 396 aa13.52□□□□□ -0.25
SNX1-208ENST00000559844 TMEM78Q5T7P6 136 aa13.52□□□□□ -0.25
SNX1-208ENST00000559844 GATD1Q8NB37 220 aa13.52□□□□□ -0.25
SNX1-208ENST00000559844 KCNS1Q96KK3 526 aa13.52□□□□□ -0.25
SNX1-208ENST00000559844 ALKBH7Q9BT30 221 aaPredicted RBP13.52□□□□□ -0.25
SNX1-208ENST00000559844 SAMD10Q9BYL1 202 aa13.52□□□□□ -0.25
SNX1-208ENST00000559844 FABP5P3A8MUU1 101 aa13.51□□□□□ -0.25
SNX1-208ENST00000559844 ELANEP08246 267 aa13.51□□□□□ -0.25
SNX1-208ENST00000559844 RIPPLY3P57055 190 aa13.51□□□□□ -0.25
SNX1-208ENST00000559844 FOXE3Q13461 319 aa13.51□□□□□ -0.25
SNX1-208ENST00000559844 C9orf47Q6ZRZ4 202 aa13.51□□□□□ -0.25
SNX1-208ENST00000559844 GPHB5Q86YW7 130 aa13.51□□□□□ -0.25
SNX1-208ENST00000559844 C18orf32Q8TCD1 76 aa13.51□□□□□ -0.25
SNX1-208ENST00000559844 PPP1R14DQ9NXH3 145 aa13.51□□□□□ -0.25
SNX1-208ENST00000559844 ZNF138P52744 262 aa13.51□□□□□ -0.25
SNX1-208ENST00000559844 AGPAT4-IT1Q9H0P7 198 aa13.5□□□□□ -0.25
SNX1-208ENST00000559844 UFC1Q9Y3C8 167 aa13.5□□□□□ -0.25
SNX1-208ENST00000559844 ARMS2P0C7Q2 107 aa13.49□□□□□ -0.25
SNX1-208ENST00000559844 ZNF80P51504 273 aaPredicted RBP13.49□□□□□ -0.25
SNX1-208ENST00000559844 CDPF1Q6NVV7 123 aa13.49□□□□□ -0.25
SNX1-208ENST00000559844 RHPN1-AS1Q9BWJ2 59 aa13.49□□□□□ -0.25
SNX1-208ENST00000559844 SMPXQ9UHP9 88 aa13.49□□□□□ -0.25
SNX1-208ENST00000559844 IQCJQ1A5X6 159 aa13.49□□□□□ -0.25
SNX1-208ENST00000559844 NRN1Q9NPD7 142 aa13.49□□□□□ -0.25
SNX1-208ENST00000559844 SOCS3O14543 225 aa13.48□□□□□ -0.25
SNX1-208ENST00000559844 OVOL1O14753 267 aa13.48□□□□□ -0.25
SNX1-208ENST00000559844 TM4SF20Q53R12 229 aa13.48□□□□□ -0.25
SNX1-208ENST00000559844 ZNF738Q8NE65 137 aa13.48□□□□□ -0.25
SNX1-208ENST00000559844 RCHY1Q96PM5 261 aa13.48□□□□□ -0.25
SNX1-208ENST00000559844 LENEPQ9Y5L5 61 aa13.48□□□□□ -0.25
SNX1-208ENST00000559844 COL6A5A8TX70 2615 aa13.47□□□□□ -0.25
SNX1-208ENST00000559844 LOC102724200A0A096LPH7 203 aaPredicted RBP13.47□□□□□ -0.25
SNX1-208ENST00000559844 GPX1P07203 203 aa13.47□□□□□ -0.25
SNX1-208ENST00000559844 HIST1H1AQ02539 215 aaPredicted RBP13.47□□□□□ -0.25
SNX1-208ENST00000559844 SAMD13Q5VXD3 122 aa13.47□□□□□ -0.25
SNX1-208ENST00000559844 C11orf44Q8N8P7 122 aa13.47□□□□□ -0.25
SNX1-208ENST00000559844 MYOZ3Q8TDC0 251 aa13.47□□□□□ -0.25
SNX1-208ENST00000559844 TPPP3Q9BW30 176 aa13.47□□□□□ -0.25
SNX1-208ENST00000559844 TMSB15BA0A087X1C1 80 aa13.47□□□□□ -0.25
SNX1-208ENST00000559844 LGALS1P09382 135 aaKnown RBP13.47□□□□□ -0.25
SNX1-208ENST00000559844 LINC01559Q495D7 138 aa13.47□□□□□ -0.25
SNX1-208ENST00000559844 LYZL1Q6UWQ5 148 aa13.47□□□□□ -0.25
SNX1-208ENST00000559844 WFDC12Q8WWY7 111 aa13.47□□□□□ -0.25
SNX1-208ENST00000559844 ZNF324O75467 553 aaPredicted RBP13.46□□□□□ -0.25
SNX1-208ENST00000559844 ORM1P02763 201 aa13.46□□□□□ -0.25
SNX1-208ENST00000559844 RPLP1P05386 114 aaKnown RBP13.46□□□□□ -0.25
SNX1-208ENST00000559844 RPL11P62913 178 aaKnown RBP13.46□□□□□ -0.25
SNX1-208ENST00000559844 RNF152Q8N8N0 203 aa13.46□□□□□ -0.25
SNX1-208ENST00000559844 FER1L6-AS1Q8NA97 138 aa13.46□□□□□ -0.25
SNX1-208ENST00000559844 LINC00477Q96M19 166 aa13.46□□□□□ -0.25
SNX1-208ENST00000559844 TENM1Q9UKZ4 2725 aa13.46□□□□□ -0.25
SNX1-208ENST00000559844 CTRLP40313 264 aa13.45□□□□□ -0.26
SNX1-208ENST00000559844 AMTP48728 403 aa13.45□□□□□ -0.26
SNX1-208ENST00000559844 HIST2H2BDQ6DRA6 164 aa13.45□□□□□ -0.26
SNX1-208ENST00000559844 ZNF493Q6ZR52 646 aa13.45□□□□□ -0.26
SNX1-208ENST00000559844 C20orf173Q96LM9 149 aa13.45□□□□□ -0.26
SNX1-208ENST00000559844 UBE2E2Q96LR5 201 aa13.45□□□□□ -0.26
SNX1-208ENST00000559844 IGLC6P0CF74 106 aa13.45□□□□□ -0.26
SNX1-208ENST00000559844 CD28P10747 220 aa13.45□□□□□ -0.26
SNX1-208ENST00000559844 TCTEX1D4Q5JR98 221 aa13.45□□□□□ -0.26
SNX1-208ENST00000559844 Q6ZWC4 215 aa13.45□□□□□ -0.26
SNX1-208ENST00000559844 OR10J6PQ8NGY7 276 aa13.45□□□□□ -0.26
SNX1-208ENST00000559844 SCGB1D1O95968 90 aa13.44□□□□□ -0.26
SNX1-208ENST00000559844 KRTAP10-3P60369 221 aa13.44□□□□□ -0.26
SNX1-208ENST00000559844 KHDC1LQ5JSQ8 128 aa13.44□□□□□ -0.26
SNX1-208ENST00000559844 HSBP1O75506 76 aa13.43□□□□□ -0.26
SNX1-208ENST00000559844 PMCHP20382 165 aa13.43□□□□□ -0.26
SNX1-208ENST00000559844 DMRTA1Q5VZB9 504 aa13.43□□□□□ -0.26
SNX1-208ENST00000559844 REC114Q7Z4M0 266 aa13.43□□□□□ -0.26
SNX1-208ENST00000559844 NAGKQ9UJ70 344 aa13.43□□□□□ -0.26
SNX1-208ENST00000559844 ID1P41134 155 aa13.43□□□□□ -0.26
SNX1-208ENST00000559844 PKIAP61925 76 aa13.43□□□□□ -0.26
SNX1-208ENST00000559844 LGALS9O00182 355 aa13.42□□□□□ -0.26
SNX1-208ENST00000559844 C12orf54Q6X4T0 127 aa13.42□□□□□ -0.26
SNX1-208ENST00000559844 MDFIQ99750 246 aa13.42□□□□□ -0.26
SNX1-208ENST00000559844 STAB1Q9NY15 2570 aa13.42□□□□□ -0.26
SNX1-208ENST00000559844 TSTD3H0UI37 97 aa13.41□□□□□ -0.26
SNX1-208ENST00000559844 RNASEKQ6P5S7 137 aaKnown RBP13.41□□□□□ -0.26
SNX1-208ENST00000559844 CHCHD1Q96BP2 118 aaKnown RBP13.41□□□□□ -0.26
SNX1-208ENST00000559844 CITED2Q99967 270 aaPredicted RBP13.41□□□□□ -0.26
SNX1-208ENST00000559844 NIT1Q86X76 327 aa13.41□□□□□ -0.26
SNX1-208ENST00000559844 TRBV7-9A0A0J9YWB2 115 aa13.4□□□□□ -0.26
SNX1-208ENST00000559844 C3orf56Q8N813 242 aa13.4□□□□□ -0.26
SNX1-208ENST00000559844 CNFNQ9BYD5 112 aa13.4□□□□□ -0.26
SNX1-208ENST00000559844 TMEM213A2RRL7 107 aa13.4□□□□□ -0.27
SNX1-208ENST00000559844 PRR31Q5SQ13 230 aa13.4□□□□□ -0.27
SNX1-208ENST00000559844 A0A1W2PRX2 142 aa13.39□□□□□ -0.27
SNX1-208ENST00000559844 LINC00587B1AMM8 73 aa13.39□□□□□ -0.27
SNX1-208ENST00000559844 NTF3P20783 257 aa13.39□□□□□ -0.27
SNX1-208ENST00000559844 TWIST1Q15672 202 aa13.39□□□□□ -0.27
SNX1-208ENST00000559844 FAM104BQ5XKR9 115 aa13.39□□□□□ -0.27
SNX1-208ENST00000559844 ZNF575Q86XF7 245 aa13.39□□□□□ -0.27
SNX1-208ENST00000559844 OR8A1Q8NGG7 326 aa13.39□□□□□ -0.27
SNX1-208ENST00000559844 CITED1Q99966 193 aa13.39□□□□□ -0.27
SNX1-208ENST00000559844 IGKV3-7A0A075B6H7 116 aa13.38□□□□□ -0.27
SNX1-208ENST00000559844 IGHV4OR15-8A0A075B7B6 117 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms