RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 LINC01587Q99440 93 aa6.74□□□□□ -1.33
LDLR-210ENST00000559340 NEU1Q99519 415 aa6.74□□□□□ -1.33
LDLR-210ENST00000559340 TRAV12-2A0A075B6T6 113 aa6.73□□□□□ -1.33
LDLR-210ENST00000559340 TRAV12-3A0A0B4J271 114 aa6.73□□□□□ -1.33
LDLR-210ENST00000559340 TRAV21A0A0B4J279 112 aa6.73□□□□□ -1.33
LDLR-210ENST00000559340 FABP5P3A8MUU1 101 aa6.73□□□□□ -1.33
LDLR-210ENST00000559340 J3KRW8 73 aa6.73□□□□□ -1.33
LDLR-210ENST00000559340 CRXO43186 299 aaPredicted RBP6.73□□□□□ -1.33
LDLR-210ENST00000559340 LTAP01374 205 aa6.73□□□□□ -1.33
LDLR-210ENST00000559340 IGLV2-11P01706 119 aa6.73□□□□□ -1.33
LDLR-210ENST00000559340 GIG44P09565 113 aaPredicted RBP6.73□□□□□ -1.33
LDLR-210ENST00000559340 PRB4P10163 310 aaPredicted RBP6.73□□□□□ -1.33
LDLR-210ENST00000559340 MIFP14174 115 aa6.73□□□□□ -1.33
LDLR-210ENST00000559340 RPL35P42766 123 aaKnown RBP6.73□□□□□ -1.33
LDLR-210ENST00000559340 FAM74A3Q4VXF1 159 aa6.73□□□□□ -1.33
LDLR-210ENST00000559340 Q86TA4 180 aa6.73□□□□□ -1.33
LDLR-210ENST00000559340 TMEM183AQ8IXX5 376 aa6.73□□□□□ -1.33
LDLR-210ENST00000559340 ZFAND2AQ8N6M9 145 aa6.73□□□□□ -1.33
LDLR-210ENST00000559340 CSNK1G2-AS1Q8NCQ2 148 aa6.73□□□□□ -1.33
LDLR-210ENST00000559340 OR11H2Q8NH07 326 aa6.73□□□□□ -1.33
LDLR-210ENST00000559340 Q8TAT8 98 aa6.73□□□□□ -1.33
LDLR-210ENST00000559340 LINC00479Q96M42 142 aa6.73□□□□□ -1.33
LDLR-210ENST00000559340 OVOL2Q9BRP0 275 aa6.73□□□□□ -1.33
LDLR-210ENST00000559340 PYGO2Q9BRQ0 406 aa6.73□□□□□ -1.33
LDLR-210ENST00000559340 IGHV3OR16-12A0A075B7B8 117 aa6.72□□□□□ -1.33
LDLR-210ENST00000559340 TMEM189A5PLL7 270 aa6.72□□□□□ -1.33
LDLR-210ENST00000559340 GCGP01275 180 aa6.72□□□□□ -1.33
LDLR-210ENST00000559340 SRP19P09132 144 aaKnown RBP6.72□□□□□ -1.33
LDLR-210ENST00000559340 GNG4P50150 75 aa6.72□□□□□ -1.33
LDLR-210ENST00000559340 RRN3P1Q2M238 152 aa6.72□□□□□ -1.33
LDLR-210ENST00000559340 GFI1BQ5VTD9 330 aa6.72□□□□□ -1.33
LDLR-210ENST00000559340 Q6AWC8 147 aa6.72□□□□□ -1.33
LDLR-210ENST00000559340 FAM159AQ6UWV7 190 aa6.72□□□□□ -1.33
LDLR-210ENST00000559340 ZNF705AQ6ZN79 300 aaPredicted RBP6.72□□□□□ -1.33
LDLR-210ENST00000559340 ZNF493Q6ZR52 646 aa6.72□□□□□ -1.33
LDLR-210ENST00000559340 COX8CQ7Z4L0 72 aa6.72□□□□□ -1.33
LDLR-210ENST00000559340 KCNS1Q96KK3 526 aa6.72□□□□□ -1.33
LDLR-210ENST00000559340 ZNF727A8MUV8 499 aa6.71□□□□□ -1.34
LDLR-210ENST00000559340 C9JCJ5 164 aa6.71□□□□□ -1.34
LDLR-210ENST00000559340 PFN1P07737 140 aaKnown RBP6.71□□□□□ -1.34
LDLR-210ENST00000559340 CEBPGP53567 150 aa6.71□□□□□ -1.34
LDLR-210ENST00000559340 BTN1A1Q13410 526 aa6.71□□□□□ -1.34
LDLR-210ENST00000559340 ZNF674Q2M3X9 581 aa6.71□□□□□ -1.34
LDLR-210ENST00000559340 FAM162BQ5T6X4 162 aa6.71□□□□□ -1.34
LDLR-210ENST00000559340 UQCC3Q6UW78 93 aa6.71□□□□□ -1.34
LDLR-210ENST00000559340 C1orf158Q8N1D5 194 aa6.71□□□□□ -1.34
LDLR-210ENST00000559340 EIF4E3Q8N5X7 224 aaKnown RBP6.71□□□□□ -1.34
LDLR-210ENST00000559340 DAZAP1Q96EP5 407 aaKnown RBP6.71□□□□□ -1.34
LDLR-210ENST00000559340 TVP23CQ96ET8 276 aa6.71□□□□□ -1.34
LDLR-210ENST00000559340 C8orf49Q96NF6 230 aa6.71□□□□□ -1.34
LDLR-210ENST00000559340 LINC00467Q9BRT7 94 aa6.71□□□□□ -1.34
LDLR-210ENST00000559340 PARLQ9H300 379 aa6.71□□□□□ -1.34
LDLR-210ENST00000559340 LY96Q9Y6Y9 160 aa6.71□□□□□ -1.34
LDLR-210ENST00000559340 U3KQK5 164 aa6.71□□□□□ -1.34
LDLR-210ENST00000559340 IGHV1OR15-1A0A075B7D0 117 aa6.7□□□□□ -1.34
LDLR-210ENST00000559340 ZNF324O75467 553 aaPredicted RBP6.7□□□□□ -1.34
LDLR-210ENST00000559340 CENPWQ5EE01 88 aa6.7□□□□□ -1.34
LDLR-210ENST00000559340 SOHLH1Q5JUK2 328 aa6.7□□□□□ -1.34
LDLR-210ENST00000559340 SMIM7Q9BQ49 75 aa6.7□□□□□ -1.34
LDLR-210ENST00000559340 TRGV11A0A075B6L2 103 aa6.69□□□□□ -1.34
LDLR-210ENST00000559340 TEX48A0A1B0GUV7 120 aa6.69□□□□□ -1.34
LDLR-210ENST00000559340 LINC00862A6NCI5 91 aa6.69□□□□□ -1.34
LDLR-210ENST00000559340 CBY3A6NI87 242 aa6.69□□□□□ -1.34
LDLR-210ENST00000559340 MGST1P10620 155 aaKnown RBP6.69□□□□□ -1.34
LDLR-210ENST00000559340 HTN1P15515 57 aa6.69□□□□□ -1.34
LDLR-210ENST00000559340 KIR3DS1Q14943 382 aa6.69□□□□□ -1.34
LDLR-210ENST00000559340 TMEM241Q24JQ0 296 aa6.69□□□□□ -1.34
LDLR-210ENST00000559340 ANXA2RQ3ZCQ2 193 aa6.69□□□□□ -1.34
LDLR-210ENST00000559340 C16orf74Q96GX8 76 aa6.69□□□□□ -1.34
LDLR-210ENST00000559340 DERL1Q9BUN8 251 aa6.69□□□□□ -1.34
LDLR-210ENST00000559340 MLST8Q9BVC4 326 aa6.69□□□□□ -1.34
LDLR-210ENST00000559340 SDF2L1Q9HCN8 221 aa6.69□□□□□ -1.34
LDLR-210ENST00000559340 NBEAL2Q6ZNJ1 2754 aa6.69□□□□□ -1.34
LDLR-210ENST00000559340 ZNF705GA8MUZ8 300 aaPredicted RBP6.68□□□□□ -1.34
LDLR-210ENST00000559340 SNURFLB1AK76 121 aa6.68□□□□□ -1.34
LDLR-210ENST00000559340 ORM1P02763 201 aa6.68□□□□□ -1.34
LDLR-210ENST00000559340 RPS20P60866 119 aaKnown RBP6.68□□□□□ -1.34
LDLR-210ENST00000559340 TDRG1Q3Y452 100 aa6.68□□□□□ -1.34
LDLR-210ENST00000559340 PRR9Q5T870 116 aa6.68□□□□□ -1.34
LDLR-210ENST00000559340 COMMD7Q86VX2 200 aa6.68□□□□□ -1.34
LDLR-210ENST00000559340 IL17DQ8TAD2 202 aa6.68□□□□□ -1.34
LDLR-210ENST00000559340 TMEM263Q8WUH6 116 aaKnown RBP6.68□□□□□ -1.34
LDLR-210ENST00000559340 ZC2HC1AQ96GY0 325 aa6.68□□□□□ -1.34
LDLR-210ENST00000559340 C11orf68Q9H3H3 251 aaKnown RBP6.68□□□□□ -1.34
LDLR-210ENST00000559340 RETNQ9HD89 108 aa6.68□□□□□ -1.34
LDLR-210ENST00000559340 NAGKQ9UJ70 344 aa6.68□□□□□ -1.34
LDLR-210ENST00000559340 X6R8D5 127 aa6.68□□□□□ -1.34
LDLR-210ENST00000559340 XKRY2A2RUG3 117 aa6.67□□□□□ -1.34
LDLR-210ENST00000559340 SH2D1AO60880 128 aa6.67□□□□□ -1.34
LDLR-210ENST00000559340 RBMY1A1P0DJD3 496 aaKnown RBP6.67□□□□□ -1.34
LDLR-210ENST00000559340 RBMY1CP0DJD4 496 aa6.67□□□□□ -1.34
LDLR-210ENST00000559340 ZNF80P51504 273 aaPredicted RBP6.67□□□□□ -1.34
LDLR-210ENST00000559340 ZNF415Q09FC8 603 aa6.67□□□□□ -1.34
LDLR-210ENST00000559340 OR5I1Q13606 314 aa6.67□□□□□ -1.34
LDLR-210ENST00000559340 RBMY1FQ15415 496 aaKnown RBP6.67□□□□□ -1.34
LDLR-210ENST00000559340 MUC21Q5SSG8 566 aa6.67□□□□□ -1.34
LDLR-210ENST00000559340 IBA57Q5T440 356 aaKnown RBP6.67□□□□□ -1.34
LDLR-210ENST00000559340 PRR27Q6MZM9 219 aa6.67□□□□□ -1.34
LDLR-210ENST00000559340 NHLRC2Q8NBF2 726 aa6.67□□□□□ -1.34
LDLR-210ENST00000559340 OCC1Q8TAD7 63 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms