RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 C5orf17Q8NAS9 161 aa0.71□□□□□ -2.3
VPS13C-207ENST00000558919 OTOSQ8NHW6 89 aa0.71□□□□□ -2.3
VPS13C-207ENST00000558919 TCEAL4Q96EI5 215 aa0.71□□□□□ -2.3
VPS13C-207ENST00000558919 OBSCN-AS1Q96MR7 158 aa0.71□□□□□ -2.3
VPS13C-207ENST00000558919 PFDN5Q99471 154 aa0.71□□□□□ -2.3
VPS13C-207ENST00000558919 SMIM7Q9BQ49 75 aa0.71□□□□□ -2.3
VPS13C-207ENST00000558919 SMIM3Q9BZL3 60 aa0.71□□□□□ -2.3
VPS13C-207ENST00000558919 FAM107BQ9H098 131 aa0.71□□□□□ -2.3
VPS13C-207ENST00000558919 WFDC10AQ9H1F0 79 aa0.71□□□□□ -2.3
VPS13C-207ENST00000558919 HLA-DRB4X5D2U9 266 aa0.71□□□□□ -2.3
VPS13C-207ENST00000558919 ERCC6L2Q5T890 1561 aa0.7□□□□□ -2.3
VPS13C-207ENST00000558919 CACNA1BQ00975 2339 aa0.7□□□□□ -2.3
VPS13C-207ENST00000558919 NCOA6Q14686 2063 aaPredicted RBP0.7□□□□□ -2.3
VPS13C-207ENST00000558919 TRAV23DV6A0A075B6W5 121 aa0.7□□□□□ -2.3
VPS13C-207ENST00000558919 ZNF727A8MUV8 499 aa0.7□□□□□ -2.3
VPS13C-207ENST00000558919 JMJD7-PLA2G4BH0Y9G9 81 aa0.7□□□□□ -2.3
VPS13C-207ENST00000558919 CD14P08571 375 aa0.7□□□□□ -2.3
VPS13C-207ENST00000558919 MPC1LP0DKB6 136 aa0.7□□□□□ -2.3
VPS13C-207ENST00000558919 AKR1D1P51857 326 aa0.7□□□□□ -2.3
VPS13C-207ENST00000558919 NCS1P62166 190 aa0.7□□□□□ -2.3
VPS13C-207ENST00000558919 PRB3Q04118 309 aaPredicted RBP0.7□□□□□ -2.3
VPS13C-207ENST00000558919 DEFB115Q30KQ5 88 aa0.7□□□□□ -2.3
VPS13C-207ENST00000558919 CCSMST1Q4G0I0 132 aa0.7□□□□□ -2.3
VPS13C-207ENST00000558919 LINC00299Q6ZSB3 139 aa0.7□□□□□ -2.3
VPS13C-207ENST00000558919 C3orf62Q6ZUJ4 267 aa0.7□□□□□ -2.3
VPS13C-207ENST00000558919 C10orf111Q8N326 155 aa0.7□□□□□ -2.3
VPS13C-207ENST00000558919 TCTEX1D1Q8N7M0 179 aa0.7□□□□□ -2.3
VPS13C-207ENST00000558919 PLPP5Q8NEB5 264 aa0.7□□□□□ -2.3
VPS13C-207ENST00000558919 TSTD1Q8NFU3 115 aa0.7□□□□□ -2.3
VPS13C-207ENST00000558919 ODF3Q96PU9 254 aa0.7□□□□□ -2.3
VPS13C-207ENST00000558919 SLC35B3Q9H1N7 401 aa0.7□□□□□ -2.3
VPS13C-207ENST00000558919 COMMD3Q9UBI1 195 aa0.7□□□□□ -2.3
VPS13C-207ENST00000558919 METTL1Q9UBP6 276 aaKnown RBP0.7□□□□□ -2.3
VPS13C-207ENST00000558919 SCN8AQ9UQD0 1980 aa0.7□□□□□ -2.3
VPS13C-207ENST00000558919 CECR2Q9BXF3 1484 aa0.69□□□□□ -2.3
VPS13C-207ENST00000558919 ROS1P08922 2347 aa0.69□□□□□ -2.3
VPS13C-207ENST00000558919 A0A1W2PPB8 328 aa0.69□□□□□ -2.3
VPS13C-207ENST00000558919 A0A1W2PRS3 328 aa0.69□□□□□ -2.3
VPS13C-207ENST00000558919 KIR3DP1A8MWS1 328 aa0.69□□□□□ -2.3
VPS13C-207ENST00000558919 K7ERU9 68 aa0.69□□□□□ -2.3
VPS13C-207ENST00000558919 YPEL1O60688 119 aa0.69□□□□□ -2.3
VPS13C-207ENST00000558919 RBP4P02753 201 aa0.69□□□□□ -2.3
VPS13C-207ENST00000558919 CD3DP04234 171 aa0.69□□□□□ -2.3
VPS13C-207ENST00000558919 IZUMO2Q6UXV1 221 aa0.69□□□□□ -2.3
VPS13C-207ENST00000558919 CTAGE3PQ8IX95 158 aa0.69□□□□□ -2.3
VPS13C-207ENST00000558919 OR8J3Q8NGG0 315 aa0.69□□□□□ -2.3
VPS13C-207ENST00000558919 TSC22D3Q99576 134 aa0.69□□□□□ -2.3
VPS13C-207ENST00000558919 PAIP2BQ9ULR5 123 aaKnown RBP0.69□□□□□ -2.3
VPS13C-207ENST00000558919 BOKQ9UMX3 212 aaPredicted RBP0.69□□□□□ -2.3
VPS13C-207ENST00000558919 DNAJC15Q9Y5T4 150 aa0.69□□□□□ -2.3
VPS13C-207ENST00000558919 OVOS2A0A0J9YW53 1432 aa0.69□□□□□ -2.3
VPS13C-207ENST00000558919 SOGA1O94964 1423 aa0.69□□□□□ -2.3
VPS13C-207ENST00000558919 OVOS2Q6IE36 1432 aa0.69□□□□□ -2.3
VPS13C-207ENST00000558919 FGD6Q6ZV73 1430 aa0.69□□□□□ -2.3
VPS13C-207ENST00000558919 PLXNA4Q9HCM2 1894 aa0.69□□□□□ -2.3
VPS13C-207ENST00000558919 PIK3C2AO00443 1686 aa0.69□□□□□ -2.3
VPS13C-207ENST00000558919 MCM3APO60318 1980 aa0.68□□□□□ -2.3
VPS13C-207ENST00000558919 NOTCH1P46531 2555 aa0.68□□□□□ -2.3
VPS13C-207ENST00000558919 A0A0J9YY99 117 aa0.68□□□□□ -2.3
VPS13C-207ENST00000558919 DISP2A7MBM2 1401 aa0.68□□□□□ -2.3
VPS13C-207ENST00000558919 ADGRB2O60241 1585 aa0.68□□□□□ -2.3
VPS13C-207ENST00000558919 IGLC6P0CF74 106 aa0.68□□□□□ -2.3
VPS13C-207ENST00000558919 ADCYAP1P18509 176 aa0.68□□□□□ -2.3
VPS13C-207ENST00000558919 PLGLB1Q02325 96 aa0.68□□□□□ -2.3
VPS13C-207ENST00000558919 SPATA45Q537H7 98 aa0.68□□□□□ -2.3
VPS13C-207ENST00000558919 CLLU1Q5K131 121 aa0.68□□□□□ -2.3
VPS13C-207ENST00000558919 GLYATL3Q5SZD4 288 aa0.68□□□□□ -2.3
VPS13C-207ENST00000558919 IDO2Q6ZQW0 420 aa0.68□□□□□ -2.3
VPS13C-207ENST00000558919 LIMD2Q9BT23 127 aa0.68□□□□□ -2.3
VPS13C-207ENST00000558919 LPAR5Q9H1C0 372 aa0.68□□□□□ -2.3
VPS13C-207ENST00000558919 KIAA1549Q9HCM3 1950 aa0.68□□□□□ -2.3
VPS13C-207ENST00000558919 ADGBQ8N7X0 1667 aa0.68□□□□□ -2.3
VPS13C-207ENST00000558919 FBN2P35556 2912 aa0.68□□□□□ -2.3
VPS13C-207ENST00000558919 COL1A1P02452 1464 aaPredicted RBP0.67□□□□□ -2.3
VPS13C-207ENST00000558919 TENM3Q9P273 2699 aa0.67□□□□□ -2.3
VPS13C-207ENST00000558919 ARHGAP31Q2M1Z3 1444 aa0.67□□□□□ -2.3
VPS13C-207ENST00000558919 CDC42EP2O14613 210 aa0.67□□□□□ -2.3
VPS13C-207ENST00000558919 NCR3O14931 201 aa0.67□□□□□ -2.3
VPS13C-207ENST00000558919 NCR2O95944 276 aa0.67□□□□□ -2.3
VPS13C-207ENST00000558919 GYPBP06028 91 aa0.67□□□□□ -2.3
VPS13C-207ENST00000558919 TSPAN19P0C672 248 aa0.67□□□□□ -2.3
VPS13C-207ENST00000558919 LINC00694P0DN24 101 aa0.67□□□□□ -2.3
VPS13C-207ENST00000558919 IL7P13232 177 aa0.67□□□□□ -2.3
VPS13C-207ENST00000558919 COPZ1P61923 177 aa0.67□□□□□ -2.3
VPS13C-207ENST00000558919 RHOHQ15669 191 aa0.67□□□□□ -2.3
VPS13C-207ENST00000558919 OCIAD2Q56VL3 154 aa0.67□□□□□ -2.3
VPS13C-207ENST00000558919 UNQ5815/PRO19632Q6UWF5 114 aa0.67□□□□□ -2.3
VPS13C-207ENST00000558919 OR10AC1Q8NH08 325 aa0.67□□□□□ -2.3
VPS13C-207ENST00000558919 AMELYQ99218 206 aa0.67□□□□□ -2.3
VPS13C-207ENST00000558919 VPS25Q9BRG1 176 aa0.67□□□□□ -2.3
VPS13C-207ENST00000558919 TPT1P8Q9HAU6 139 aa0.67□□□□□ -2.3
VPS13C-207ENST00000558919 SAR1AQ9NR31 198 aa0.67□□□□□ -2.3
VPS13C-207ENST00000558919 TAS2R8Q9NYW2 309 aa0.67□□□□□ -2.3
VPS13C-207ENST00000558919 LSM2Q9Y333 95 aaKnown RBP0.67□□□□□ -2.3
VPS13C-207ENST00000558919 NOP16Q9Y3C1 178 aaKnown RBP0.67□□□□□ -2.3
VPS13C-207ENST00000558919 C22orf24Q9Y442 160 aa0.67□□□□□ -2.3
VPS13C-207ENST00000558919 LAMB4A4D0S4 1761 aa0.67□□□□□ -2.3
VPS13C-207ENST00000558919 DOCK4Q8N1I0 1966 aa0.66□□□□□ -2.3
VPS13C-207ENST00000558919 CCDC171Q6TFL3 1326 aa0.66□□□□□ -2.3
VPS13C-207ENST00000558919 MYH2Q9UKX2 1941 aa0.66□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms