RNA–Protein interactions for RNA: ENST00000558155.1

SPG11-208, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-208ENST00000558155 BPIFA4PQ86YQ2 179 aa3.46□□□□□ -1.86
SPG11-208ENST00000558155 WFDC10BQ8IUB3 73 aa3.46□□□□□ -1.86
SPG11-208ENST00000558155 C11orf72Q8NBR9 251 aa3.46□□□□□ -1.86
SPG11-208ENST00000558155 NUDT10Q8NFP7 164 aa3.46□□□□□ -1.86
SPG11-208ENST00000558155 PRRT1Q99946 306 aa3.46□□□□□ -1.86
SPG11-208ENST00000558155 ARL6Q9H0F7 186 aa3.46□□□□□ -1.86
SPG11-208ENST00000558155 BIN3Q9NQY0 253 aa3.46□□□□□ -1.86
SPG11-208ENST00000558155 NAGKQ9UJ70 344 aa3.46□□□□□ -1.86
SPG11-208ENST00000558155 SCP2D1Q9UJQ7 156 aa3.46□□□□□ -1.86
SPG11-208ENST00000558155 KLF12Q9Y4X4 402 aa3.46□□□□□ -1.86
SPG11-208ENST00000558155 PXMP4Q9Y6I8 212 aa3.46□□□□□ -1.86
SPG11-208ENST00000558155 MYCBP2O75592 4640 aa3.45□□□□□ -1.86
SPG11-208ENST00000558155 FAT1Q14517 4588 aa3.45□□□□□ -1.86
SPG11-208ENST00000558155 TRAV8-6A0A0B4J262 113 aa3.45□□□□□ -1.86
SPG11-208ENST00000558155 DUXBA0A1W2PPF3 345 aa3.45□□□□□ -1.86
SPG11-208ENST00000558155 SMCO3A2RU48 225 aa3.45□□□□□ -1.86
SPG11-208ENST00000558155 C7orf71A4D174 169 aa3.45□□□□□ -1.86
SPG11-208ENST00000558155 PRAC2D3DTV9 90 aa3.45□□□□□ -1.86
SPG11-208ENST00000558155 PRSS46E5RG02 174 aa3.45□□□□□ -1.86
SPG11-208ENST00000558155 MRPS12O15235 138 aaKnown RBP3.45□□□□□ -1.86
SPG11-208ENST00000558155 SYNGR2O43760 224 aa3.45□□□□□ -1.86
SPG11-208ENST00000558155 EIF4EBP3O60516 100 aaPredicted RBP3.45□□□□□ -1.86
SPG11-208ENST00000558155 LINC00869P0C866 280 aa3.45□□□□□ -1.86
SPG11-208ENST00000558155 SLC25A6P12236 298 aa3.45□□□□□ -1.86
SPG11-208ENST00000558155 GYPEP15421 78 aa3.45□□□□□ -1.86
SPG11-208ENST00000558155 TNFSF8P32971 234 aa3.45□□□□□ -1.86
SPG11-208ENST00000558155 RNASE4P34096 147 aaKnown RBP3.45□□□□□ -1.86
SPG11-208ENST00000558155 TCL1AP56279 114 aa3.45□□□□□ -1.86
SPG11-208ENST00000558155 SUMO1P63165 101 aaKnown RBP3.45□□□□□ -1.86
SPG11-208ENST00000558155 MRPS10P82664 201 aaKnown RBP3.45□□□□□ -1.86
SPG11-208ENST00000558155 ASAH1Q13510 395 aa3.45□□□□□ -1.86
SPG11-208ENST00000558155 ACOT6Q3I5F7 207 aaPredicted RBP3.45□□□□□ -1.86
SPG11-208ENST00000558155 IBA57Q5T440 356 aaKnown RBP3.45□□□□□ -1.86
SPG11-208ENST00000558155 MORN5Q5VZ52 161 aa3.45□□□□□ -1.86
SPG11-208ENST00000558155 TEPPQ6URK8 271 aa3.45□□□□□ -1.86
SPG11-208ENST00000558155 AP3S1Q92572 193 aa3.45□□□□□ -1.86
SPG11-208ENST00000558155 YIPF6Q96EC8 236 aa3.45□□□□□ -1.86
SPG11-208ENST00000558155 LINC00477Q96M19 166 aa3.45□□□□□ -1.86
SPG11-208ENST00000558155 PFDN5Q99471 154 aa3.45□□□□□ -1.86
SPG11-208ENST00000558155 VGLL1Q99990 258 aa3.45□□□□□ -1.86
SPG11-208ENST00000558155 ARV1Q9H2C2 271 aa3.45□□□□□ -1.86
SPG11-208ENST00000558155 NPVFQ9HCQ7 196 aa3.45□□□□□ -1.86
SPG11-208ENST00000558155 PRR13Q9NZ81 148 aa3.45□□□□□ -1.86
SPG11-208ENST00000558155 ALG5Q9Y673 324 aa3.45□□□□□ -1.86
SPG11-208ENST00000558155 A0A1W2PPV4 95 aa3.44□□□□□ -1.86
SPG11-208ENST00000558155 C9JCJ5 164 aa3.44□□□□□ -1.86
SPG11-208ENST00000558155 TMEM238C9JI98 176 aa3.44□□□□□ -1.86
SPG11-208ENST00000558155 GOSR2O14653 212 aa3.44□□□□□ -1.86
SPG11-208ENST00000558155 RS1O15537 224 aa3.44□□□□□ -1.86
SPG11-208ENST00000558155 GPX1P07203 203 aa3.44□□□□□ -1.86
SPG11-208ENST00000558155 SNRPCP09234 159 aaKnown RBP3.44□□□□□ -1.86
SPG11-208ENST00000558155 TIRAPP58753 221 aa3.44□□□□□ -1.86
SPG11-208ENST00000558155 UBE2G2P60604 165 aa3.44□□□□□ -1.86
SPG11-208ENST00000558155 ID3Q02535 119 aa3.44□□□□□ -1.86
SPG11-208ENST00000558155 GAGE1Q13065 139 aa3.44□□□□□ -1.86
SPG11-208ENST00000558155 GUK1Q16774 197 aa3.44□□□□□ -1.86
SPG11-208ENST00000558155 LINC01556Q5JQF7 62 aa3.44□□□□□ -1.86
SPG11-208ENST00000558155 FAAP20Q6NZ36 180 aa3.44□□□□□ -1.86
SPG11-208ENST00000558155 PATE2Q6UY27 113 aa3.44□□□□□ -1.86
SPG11-208ENST00000558155 SCXQ7RTU7 201 aa3.44□□□□□ -1.86
SPG11-208ENST00000558155 LINC00305Q7Z4B0 112 aa3.44□□□□□ -1.86
SPG11-208ENST00000558155 NHLRC2Q8NBF2 726 aa3.44□□□□□ -1.86
SPG11-208ENST00000558155 STOML3Q8TAV4 291 aa3.44□□□□□ -1.86
SPG11-208ENST00000558155 BLNKQ8WV28 456 aa3.44□□□□□ -1.86
SPG11-208ENST00000558155 C2orf88Q9BSF0 95 aa3.44□□□□□ -1.86
SPG11-208ENST00000558155 CHAC1Q9BUX1 264 aa3.44□□□□□ -1.86
SPG11-208ENST00000558155 Q9HAA7 133 aa3.44□□□□□ -1.86
SPG11-208ENST00000558155 MRPL16Q9NX20 251 aaKnown RBP3.44□□□□□ -1.86
SPG11-208ENST00000558155 UBR4Q5T4S7 5183 aa3.44□□□□□ -1.86
SPG11-208ENST00000558155 IGHV1OR15-1A0A075B7D0 117 aa3.43□□□□□ -1.86
SPG11-208ENST00000558155 RBFOX3A6NFN3 312 aa3.43□□□□□ -1.86
SPG11-208ENST00000558155 KLLNB2CW77 178 aa3.43□□□□□ -1.86
SPG11-208ENST00000558155 FNDC10F2Z333 226 aa3.43□□□□□ -1.86
SPG11-208ENST00000558155 H3BTX0 84 aa3.43□□□□□ -1.86
SPG11-208ENST00000558155 K7EPK0 472 aa3.43□□□□□ -1.86
SPG11-208ENST00000558155 CCSO14618 274 aa3.43□□□□□ -1.86
SPG11-208ENST00000558155 PFN1P07737 140 aaKnown RBP3.43□□□□□ -1.86
SPG11-208ENST00000558155 NMBP08949 121 aa3.43□□□□□ -1.86
SPG11-208ENST00000558155 RPL35P42766 123 aaKnown RBP3.43□□□□□ -1.86
SPG11-208ENST00000558155 PPT1P50897 306 aa3.43□□□□□ -1.86
SPG11-208ENST00000558155 NCS1P62166 190 aa3.43□□□□□ -1.86
SPG11-208ENST00000558155 BLOC1S1P78537 153 aa3.43□□□□□ -1.86
SPG11-208ENST00000558155 CD300CQ08708 224 aa3.43□□□□□ -1.86
SPG11-208ENST00000558155 OPCMLQ14982 345 aa3.43□□□□□ -1.86
SPG11-208ENST00000558155 OR10J3Q5JRS4 329 aa3.43□□□□□ -1.86
SPG11-208ENST00000558155 C10orf113Q5VZT2 155 aa3.43□□□□□ -1.86
SPG11-208ENST00000558155 SAT2Q96F10 170 aaPredicted RBP3.43□□□□□ -1.86
SPG11-208ENST00000558155 MRPS26Q9BYN8 205 aaKnown RBP3.43□□□□□ -1.86
SPG11-208ENST00000558155 SLC25A31Q9H0C2 315 aa3.43□□□□□ -1.86
SPG11-208ENST00000558155 AGPAT4-IT1Q9H0P7 198 aa3.43□□□□□ -1.86
SPG11-208ENST00000558155 GPN1Q9HCN4 374 aaPredicted RBP3.43□□□□□ -1.86
SPG11-208ENST00000558155 DNAJC4Q9NNZ3 241 aa3.43□□□□□ -1.86
SPG11-208ENST00000558155 PSENENQ9NZ42 101 aa3.43□□□□□ -1.86
SPG11-208ENST00000558155 TP53TG3Q9ULZ0 132 aa3.43□□□□□ -1.86
SPG11-208ENST00000558155 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.42□□□□□ -1.86
SPG11-208ENST00000558155 A0A087WXM4 84 aa3.42□□□□□ -1.86
SPG11-208ENST00000558155 TRAV8-3A0A0A6YYJ7 113 aa3.42□□□□□ -1.86
SPG11-208ENST00000558155 A0A1B0GV72 72 aa3.42□□□□□ -1.86
SPG11-208ENST00000558155 A0A1B0GV90 55 aa3.42□□□□□ -1.86
SPG11-208ENST00000558155 FABP12A6NFH5 140 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms