RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 OR10J3Q5JRS4 329 aa12.8□□□□□ -0.36
LDLR-206ENST00000557958 C9orf47Q6ZRZ4 202 aa12.8□□□□□ -0.36
LDLR-206ENST00000557958 PPP1R14DQ9NXH3 145 aa12.8□□□□□ -0.36
LDLR-206ENST00000557958 A0A1B0GUT8 65 aa12.8□□□□□ -0.36
LDLR-206ENST00000557958 FABP5P3A8MUU1 101 aa12.8□□□□□ -0.36
LDLR-206ENST00000557958 LGALS9O00182 355 aa12.8□□□□□ -0.36
LDLR-206ENST00000557958 RNASE1P07998 156 aaKnown RBP12.8□□□□□ -0.36
LDLR-206ENST00000557958 ERCC8Q13216 396 aa12.8□□□□□ -0.36
LDLR-206ENST00000557958 RIGQ13278 110 aa12.8□□□□□ -0.36
LDLR-206ENST00000557958 BAGE3Q86Y29 109 aa12.8□□□□□ -0.36
LDLR-206ENST00000557958 KLHDC1Q8N7A1 406 aa12.8□□□□□ -0.36
LDLR-206ENST00000557958 OR10J6PQ8NGY7 276 aa12.8□□□□□ -0.36
LDLR-206ENST00000557958 JMJD8Q96S16 334 aa12.8□□□□□ -0.36
LDLR-206ENST00000557958 LENEPQ9Y5L5 61 aa12.8□□□□□ -0.36
LDLR-206ENST00000557958 GRIFINA4D1Z8 144 aa12.79□□□□□ -0.36
LDLR-206ENST00000557958 HAX1O00165 279 aa12.79□□□□□ -0.36
LDLR-206ENST00000557958 CRLF1O75462 422 aa12.79□□□□□ -0.36
LDLR-206ENST00000557958 ID1P41134 155 aa12.79□□□□□ -0.36
LDLR-206ENST00000557958 MRPL52Q86TS9 123 aaKnown RBP12.79□□□□□ -0.36
LDLR-206ENST00000557958 AGPAT4-IT1Q9H0P7 198 aa12.79□□□□□ -0.36
LDLR-206ENST00000557958 HIVEP1P15822 2718 aa12.79□□□□□ -0.36
LDLR-206ENST00000557958 SOCS3O14543 225 aa12.78□□□□□ -0.36
LDLR-206ENST00000557958 SCGB1D1O95968 90 aa12.78□□□□□ -0.36
LDLR-206ENST00000557958 TP53TG3Q9ULZ0 132 aa12.78□□□□□ -0.36
LDLR-206ENST00000557958 TCF21O43680 179 aa12.78□□□□□ -0.36
LDLR-206ENST00000557958 SRIP30626 198 aa12.78□□□□□ -0.36
LDLR-206ENST00000557958 SLAQ13239 276 aa12.78□□□□□ -0.36
LDLR-206ENST00000557958 LINC00477Q96M19 166 aa12.78□□□□□ -0.36
LDLR-206ENST00000557958 SETXQ7Z333 2677 aaKnown RBP12.77□□□□□ -0.36
LDLR-206ENST00000557958 A0A1B0GUS0 222 aa12.77□□□□□ -0.37
LDLR-206ENST00000557958 NUPR1O60356 82 aa12.77□□□□□ -0.37
LDLR-206ENST00000557958 LINC00310P59036 64 aa12.77□□□□□ -0.37
LDLR-206ENST00000557958 TMEM213A2RRL7 107 aa12.76□□□□□ -0.37
LDLR-206ENST00000557958 M0QZ24 198 aa12.76□□□□□ -0.37
LDLR-206ENST00000557958 HOXD3P31249 432 aaPredicted RBP12.76□□□□□ -0.37
LDLR-206ENST00000557958 HIST1H1AQ02539 215 aaPredicted RBP12.76□□□□□ -0.37
LDLR-206ENST00000557958 KIAA1644Q3SXP7 199 aa12.76□□□□□ -0.37
LDLR-206ENST00000557958 IGHV4OR15-8A0A075B7B6 117 aa12.76□□□□□ -0.37
LDLR-206ENST00000557958 A0A087WW49 117 aa12.76□□□□□ -0.37
LDLR-206ENST00000557958 EREGO14944 169 aa12.76□□□□□ -0.37
LDLR-206ENST00000557958 HIST2H2BDQ6DRA6 164 aa12.76□□□□□ -0.37
LDLR-206ENST00000557958 TEX43Q6ZNM6 134 aa12.76□□□□□ -0.37
LDLR-206ENST00000557958 TPPP3Q9BW30 176 aa12.76□□□□□ -0.37
LDLR-206ENST00000557958 MTORP42345 2549 aa12.76□□□□□ -0.37
LDLR-206ENST00000557958 ORM1P02763 201 aa12.75□□□□□ -0.37
LDLR-206ENST00000557958 SYNJ2BPP57105 145 aa12.75□□□□□ -0.37
LDLR-206ENST00000557958 NUTF2P61970 127 aaKnown RBP12.75□□□□□ -0.37
LDLR-206ENST00000557958 KHDC1LQ5JSQ8 128 aa12.75□□□□□ -0.37
LDLR-206ENST00000557958 GDF5OSQ5U4N7 250 aa12.75□□□□□ -0.37
LDLR-206ENST00000557958 C4orf3Q8WVX3 66 aa12.75□□□□□ -0.37
LDLR-206ENST00000557958 C20orf173Q96LM9 149 aa12.75□□□□□ -0.37
LDLR-206ENST00000557958 C20orf144Q9BQM9 153 aa12.75□□□□□ -0.37
LDLR-206ENST00000557958 SERF1AO75920 110 aa12.74□□□□□ -0.37
LDLR-206ENST00000557958 ZNF80P51504 273 aaPredicted RBP12.74□□□□□ -0.37
LDLR-206ENST00000557958 LINC01559Q495D7 138 aa12.74□□□□□ -0.37
LDLR-206ENST00000557958 Q6ZWC4 215 aa12.74□□□□□ -0.37
LDLR-206ENST00000557958 C11orf44Q8N8P7 122 aa12.74□□□□□ -0.37
LDLR-206ENST00000557958 SSBP4Q9BWG4 385 aaPredicted RBP12.74□□□□□ -0.37
LDLR-206ENST00000557958 IGKV3-7A0A075B6H7 116 aa12.74□□□□□ -0.37
LDLR-206ENST00000557958 TMSB15BA0A087X1C1 80 aa12.74□□□□□ -0.37
LDLR-206ENST00000557958 ARMS2P0C7Q2 107 aa12.74□□□□□ -0.37
LDLR-206ENST00000557958 FER1L6-AS1Q8NA97 138 aa12.74□□□□□ -0.37
LDLR-206ENST00000557958 WFDC12Q8WWY7 111 aa12.74□□□□□ -0.37
LDLR-206ENST00000557958 TRBV7-9A0A0J9YWB2 115 aa12.73□□□□□ -0.37
LDLR-206ENST00000557958 LINC01619G3V211 115 aa12.73□□□□□ -0.37
LDLR-206ENST00000557958 M0R143 59 aa12.73□□□□□ -0.37
LDLR-206ENST00000557958 DPF1Q92782 380 aa12.73□□□□□ -0.37
LDLR-206ENST00000557958 RAB4AP20338 218 aa12.72□□□□□ -0.37
LDLR-206ENST00000557958 CTRLP40313 264 aa12.72□□□□□ -0.37
LDLR-206ENST00000557958 SNRPD3P62318 126 aaKnown RBP12.72□□□□□ -0.37
LDLR-206ENST00000557958 KLF5Q13887 457 aaPredicted RBP12.72□□□□□ -0.37
LDLR-206ENST00000557958 LYZL1Q6UWQ5 148 aa12.72□□□□□ -0.37
LDLR-206ENST00000557958 GATD1Q8NB37 220 aa12.72□□□□□ -0.37
LDLR-206ENST00000557958 OR8A1Q8NGG7 326 aa12.72□□□□□ -0.37
LDLR-206ENST00000557958 LINC01006Q8NI28 216 aa12.72□□□□□ -0.37
LDLR-206ENST00000557958 SNHG12Q9BXW3 62 aa12.72□□□□□ -0.37
LDLR-206ENST00000557958 F2Z2F3 143 aa12.72□□□□□ -0.37
LDLR-206ENST00000557958 ZNF705DP0CH99 300 aaPredicted RBP12.72□□□□□ -0.37
LDLR-206ENST00000557958 ZNF705BP0CI00 300 aaPredicted RBP12.72□□□□□ -0.37
LDLR-206ENST00000557958 DCANP1Q8TF63 244 aa12.72□□□□□ -0.37
LDLR-206ENST00000557958 ALKBH7Q9BT30 221 aaPredicted RBP12.72□□□□□ -0.37
LDLR-206ENST00000557958 SAMD10Q9BYL1 202 aa12.72□□□□□ -0.37
LDLR-206ENST00000557958 PEMTQ9UBM1 199 aa12.72□□□□□ -0.37
LDLR-206ENST00000557958 KCNS1Q96KK3 526 aa12.71□□□□□ -0.37
LDLR-206ENST00000557958 MS4A6AQ9H2W1 248 aa12.71□□□□□ -0.37
LDLR-206ENST00000557958 LOC102724200A0A096LPH7 203 aaPredicted RBP12.7□□□□□ -0.38
LDLR-206ENST00000557958 C2orf70A6NJV1 201 aa12.7□□□□□ -0.38
LDLR-206ENST00000557958 C18orf32Q8TCD1 76 aa12.7□□□□□ -0.38
LDLR-206ENST00000557958 IGLC6P0CF74 106 aa12.7□□□□□ -0.38
LDLR-206ENST00000557958 ZNF493Q6ZR52 646 aa12.7□□□□□ -0.38
LDLR-206ENST00000557958 C18orf65Q6ZTR6 163 aa12.7□□□□□ -0.38
LDLR-206ENST00000557958 C16orf95Q9H693 158 aa12.7□□□□□ -0.38
LDLR-206ENST00000557958 F8P00451 2351 aa12.69□□□□□ -0.38
LDLR-206ENST00000557958 FN1P02751 2386 aaKnown RBP12.69□□□□□ -0.38
LDLR-206ENST00000557958 TCAPO15273 167 aa12.69□□□□□ -0.38
LDLR-206ENST00000557958 KLHL30-AS1Q8NEE0 82 aa12.69□□□□□ -0.38
LDLR-206ENST00000557958 OR11H1Q8NG94 326 aa12.69□□□□□ -0.38
LDLR-206ENST00000557958 OR1N2Q8NGR9 330 aa12.69□□□□□ -0.38
LDLR-206ENST00000557958 RNF114Q9Y508 228 aa12.69□□□□□ -0.38
LDLR-206ENST00000557958 TRAV21A0A0B4J279 112 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms