RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	RALGAPA1	Q6GYQ0	2036 aa		3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005	PRSS29P	A6NIE9	313 aa		3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005		F6UB75	175 aa		3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005	CRYBA4	P53673	196 aa		3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005	HIST1H4A	P62805	103 aa	Known RBP	3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005	C9orf139	Q6ZV77	190 aa		3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005	CARD19	Q96LW7	228 aa		3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005		B5MCH6	92 aa		3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005		I3L3M4	83 aa		3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005	FOXI1	Q12951	378 aa		3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005	C15orf53	Q8NAA6	179 aa		3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005	SMIM2	Q9BVW6	85 aa		3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005	FAM215A	Q9Y5M1	114 aa		3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005	SAA4	P35542	130 aa		3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005	SUMO4	Q6EEV6	95 aa		3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005	GATD1	Q8NB37	220 aa		3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005	KLHL30-AS1	Q8NEE0	82 aa		3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005	SPANXB1	Q9NS25	103 aa	Predicted RBP	3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005		A0A1W2PNU3	283 aa	Predicted RBP	3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005	KNCN	A6PVL3	124 aa		3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005	SHISA9	B4DS77	424 aa		3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005	ATP5J2	P56134	94 aa		3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005	ODF1	Q14990	250 aa		3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005	C9orf153	Q5TBE3	101 aa		3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005		Q8N7P7	452 aa		3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005	PRO1854	Q9UHT4	67 aa		3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005		F8VRH5	84 aa		3.88	□□□□□ -1.79
SYNE2-223	ENST00000557005		K7EIM0	57 aa		3.88	□□□□□ -1.79
SYNE2-223	ENST00000557005	MT-ATP8	P03928	68 aa		3.88	□□□□□ -1.79
SYNE2-223	ENST00000557005	WT1	P19544	449 aa	Predicted RBP	3.88	□□□□□ -1.79
SYNE2-223	ENST00000557005	LINC00158	P58513	81 aa		3.88	□□□□□ -1.79
SYNE2-223	ENST00000557005	PTH2	Q96A98	100 aa		3.88	□□□□□ -1.79
SYNE2-223	ENST00000557005	ZNF625	Q96I27	306 aa	Predicted RBP	3.88	□□□□□ -1.79
SYNE2-223	ENST00000557005	RHPN1-AS1	Q9BWJ2	59 aa		3.88	□□□□□ -1.79
SYNE2-223	ENST00000557005	MSRB2	Q9Y3D2	182 aa		3.88	□□□□□ -1.79
SYNE2-223	ENST00000557005	GOLGB1	Q14789	3259 aa	Known RBP	3.88	□□□□□ -1.79
SYNE2-223	ENST00000557005	ZNF80	P51504	273 aa	Predicted RBP	3.88	□□□□□ -1.79
SYNE2-223	ENST00000557005	MINOS1	Q5TGZ0	78 aa		3.88	□□□□□ -1.79
SYNE2-223	ENST00000557005	NTN5	Q8WTR8	489 aa	Predicted RBP	3.88	□□□□□ -1.79
SYNE2-223	ENST00000557005	C7orf69	Q9H7B7	122 aa		3.88	□□□□□ -1.79
SYNE2-223	ENST00000557005	MINOS1-NBL1	R4GNA1	71 aa		3.88	□□□□□ -1.79
SYNE2-223	ENST00000557005		Q71RC1	249 aa	Predicted RBP	3.88	□□□□□ -1.79
SYNE2-223	ENST00000557005	MUSTN1	Q8IVN3	82 aa		3.88	□□□□□ -1.79
SYNE2-223	ENST00000557005	C8orf31	Q8N9H6	132 aa		3.88	□□□□□ -1.79
SYNE2-223	ENST00000557005	SPAG8	Q99932	426 aa	Predicted RBP	3.88	□□□□□ -1.79
SYNE2-223	ENST00000557005	C3orf56	Q8N813	242 aa		3.88	□□□□□ -1.79
SYNE2-223	ENST00000557005	TRAV26-1	A0A087WT03	109 aa		3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	PRSS47	A8MTI9	375 aa		3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	DUSP14	O95147	198 aa	Known RBP	3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	TCL1B	O95988	128 aa		3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	ZNF493	Q6ZR52	646 aa		3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	STH	Q8IWL8	128 aa		3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	RNF183	Q96D59	192 aa		3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	URB1-AS1	Q96HZ7	61 aa		3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	CHCHD5	Q9BSY4	110 aa		3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	RAI1	Q7Z5J4	1906 aa	Predicted RBP	3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	RBAKDN	A6NC62	111 aa		3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005		J3QQQ9	107 aa		3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	MAPKAPK5-AS1	Q8N8E1	139 aa		3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	NPB	Q8NG41	125 aa		3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	PRSS22	Q9GZN4	317 aa		3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	AGPAT4-IT1	Q9H0P7	198 aa		3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005		U3KQK5	164 aa		3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	CACNA1C	Q13936	2221 aa		3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	SDHAF1	A6NFY7	115 aa		3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	CRIP1	P50238	77 aa		3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	RPL39	P62891	51 aa	Known RBP	3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	SPINK13	Q1W4C9	94 aa		3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	HIGD1B	Q9P298	99 aa		3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	OVOL3	O00110	214 aa		3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	RS1	O15537	224 aa		3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	PROP1	O75360	226 aa		3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	DEFB1	P60022	68 aa		3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	CFHR3	Q02985	330 aa		3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	CLEC2B	Q92478	149 aa		3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	IGKV2-29	A2NJV5	120 aa	Predicted RBP	3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	ICOS	Q9Y6W8	199 aa		3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	COL4A2	P08572	1712 aa		3.87	□□□□□ -1.79
SYNE2-223	ENST00000557005	TNRC6A	Q8NDV7	1962 aa	Known RBP	3.86	□□□□□ -1.79
SYNE2-223	ENST00000557005	IGKV2D-26	A0A0A0MRZ7	120 aa		3.86	□□□□□ -1.79
SYNE2-223	ENST00000557005	TRBV6-1	A0A0K0K1D8	114 aa		3.86	□□□□□ -1.79
SYNE2-223	ENST00000557005	IGLV2-11	P01706	119 aa		3.86	□□□□□ -1.79
SYNE2-223	ENST00000557005	CRP	P02741	224 aa		3.86	□□□□□ -1.79
SYNE2-223	ENST00000557005	C20orf78	Q9BR46	151 aa		3.86	□□□□□ -1.79
SYNE2-223	ENST00000557005	TRAV12-1	A0A0B4J245	112 aa		3.86	□□□□□ -1.79
SYNE2-223	ENST00000557005	SP5	Q6BEB4	398 aa	Predicted RBP	3.86	□□□□□ -1.79
SYNE2-223	ENST00000557005	SEM1	Q6ZVN7	128 aa		3.86	□□□□□ -1.79
SYNE2-223	ENST00000557005	RASL10A	Q92737	203 aa		3.86	□□□□□ -1.79
SYNE2-223	ENST00000557005	RNF185	Q96GF1	192 aa		3.86	□□□□□ -1.79
SYNE2-223	ENST00000557005	PEMT	Q9UBM1	199 aa		3.86	□□□□□ -1.79
SYNE2-223	ENST00000557005	SPAG17	Q6Q759	2223 aa		3.86	□□□□□ -1.79
SYNE2-223	ENST00000557005	IGLV11-55	A0A075B6I3	123 aa		3.86	□□□□□ -1.79
SYNE2-223	ENST00000557005	TRGV2	A0A075B6R0	118 aa		3.86	□□□□□ -1.79
SYNE2-223	ENST00000557005		H3BUX3	64 aa		3.86	□□□□□ -1.79
SYNE2-223	ENST00000557005	CFC1B	P0CG36	223 aa		3.86	□□□□□ -1.79
SYNE2-223	ENST00000557005	CFC1	P0CG37	223 aa		3.86	□□□□□ -1.79
SYNE2-223	ENST00000557005	MAL	P21145	153 aa		3.86	□□□□□ -1.79
SYNE2-223	ENST00000557005	TRGV1	A0A0A0MS02	117 aa		3.85	□□□□□ -1.79

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