RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 TRAV1-1A0A0B4J248 108 aa12.54□□□□□ -0.4
SHMT2-225ENST00000556798 ZNF324O75467 553 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-225ENST00000556798 FLI1Q01543 452 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-225ENST00000556798 ZNF767PQ75MW2 155 aa12.54□□□□□ -0.4
SHMT2-225ENST00000556798 PRNTQ86SH4 94 aa12.54□□□□□ -0.4
SHMT2-225ENST00000556798 TMEM75Q8N9X5 138 aa12.54□□□□□ -0.4
SHMT2-225ENST00000556798 TMEM189A5PLL7 270 aa12.53□□□□□ -0.4
SHMT2-225ENST00000556798 CXorf65A6NEN9 183 aa12.53□□□□□ -0.4
SHMT2-225ENST00000556798 C3orf84H3BNL1 204 aa12.53□□□□□ -0.4
SHMT2-225ENST00000556798 TEX46H3BTG2 121 aa12.53□□□□□ -0.4
SHMT2-225ENST00000556798 PPT1P50897 306 aa12.53□□□□□ -0.4
SHMT2-225ENST00000556798 HIST1H2BAQ96A08 127 aa12.53□□□□□ -0.4
SHMT2-225ENST00000556798 C8orf49Q96NF6 230 aa12.53□□□□□ -0.4
SHMT2-225ENST00000556798 TREM1Q9NP99 234 aa12.53□□□□□ -0.4
SHMT2-225ENST00000556798 STARD9Q9P2P6 4700 aa12.53□□□□□ -0.4
SHMT2-225ENST00000556798 PLAC8L1A1L4L8 177 aa12.52□□□□□ -0.41
SHMT2-225ENST00000556798 CASC10Q5T4H9 136 aa12.52□□□□□ -0.41
SHMT2-225ENST00000556798 FAM222AQ5U5X8 452 aa12.52□□□□□ -0.41
SHMT2-225ENST00000556798 PYGO2Q9BRQ0 406 aa12.52□□□□□ -0.41
SHMT2-225ENST00000556798 NDFIP1Q9BT67 221 aa12.52□□□□□ -0.41
SHMT2-225ENST00000556798 MANBALQ9NQG1 85 aa12.52□□□□□ -0.41
SHMT2-225ENST00000556798 SCO2A0A1W2PP80 73 aa12.51□□□□□ -0.41
SHMT2-225ENST00000556798 C11orf94C9JXX5 98 aa12.51□□□□□ -0.41
SHMT2-225ENST00000556798 Q86TA4 180 aa12.51□□□□□ -0.41
SHMT2-225ENST00000556798 RNASE8Q8TDE3 154 aaKnown RBP12.51□□□□□ -0.41
SHMT2-225ENST00000556798 TMEM263Q8WUH6 116 aaKnown RBP12.51□□□□□ -0.41
SHMT2-225ENST00000556798 C16orf74Q96GX8 76 aa12.51□□□□□ -0.41
SHMT2-225ENST00000556798 DKK2Q9UBU2 259 aa12.51□□□□□ -0.41
SHMT2-225ENST00000556798 RGS13O14921 159 aa12.5□□□□□ -0.41
SHMT2-225ENST00000556798 SPART-AS1P0CW21 52 aa12.5□□□□□ -0.41
SHMT2-225ENST00000556798 AKR1C3P42330 323 aa12.5□□□□□ -0.41
SHMT2-225ENST00000556798 MUC21Q5SSG8 566 aa12.5□□□□□ -0.41
SHMT2-225ENST00000556798 Q6AWC8 147 aa12.5□□□□□ -0.41
SHMT2-225ENST00000556798 TCEAL7Q9BRU2 100 aa12.5□□□□□ -0.41
SHMT2-225ENST00000556798 IGHV1OR15-1A0A075B7D0 117 aa12.49□□□□□ -0.41
SHMT2-225ENST00000556798 FBLL1A6NHQ2 334 aaKnown RBP12.49□□□□□ -0.41
SHMT2-225ENST00000556798 CBY3A6NI87 242 aa12.49□□□□□ -0.41
SHMT2-225ENST00000556798 C12orf74Q32Q52 190 aa12.49□□□□□ -0.41
SHMT2-225ENST00000556798 Q6ZTC4 211 aa12.49□□□□□ -0.41
SHMT2-225ENST00000556798 EIF4E3Q8N5X7 224 aaKnown RBP12.49□□□□□ -0.41
SHMT2-225ENST00000556798 NAGKQ9UJ70 344 aa12.49□□□□□ -0.41
SHMT2-225ENST00000556798 TENM2Q9NT68 2774 aa12.48□□□□□ -0.41
SHMT2-225ENST00000556798 GCGP01275 180 aa12.48□□□□□ -0.41
SHMT2-225ENST00000556798 ZNF80P51504 273 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-225ENST00000556798 UBE2G1P62253 170 aa12.48□□□□□ -0.41
SHMT2-225ENST00000556798 BLOC1S1P78537 153 aa12.48□□□□□ -0.41
SHMT2-225ENST00000556798 ZNF493Q6ZR52 646 aa12.48□□□□□ -0.41
SHMT2-225ENST00000556798 PHLDA1Q8WV24 401 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-225ENST00000556798 TP53TG3Q9ULZ0 132 aa12.48□□□□□ -0.41
SHMT2-225ENST00000556798 IFNA1P01562 189 aa12.47□□□□□ -0.41
SHMT2-225ENST00000556798 BCL2P10415 239 aa12.47□□□□□ -0.41
SHMT2-225ENST00000556798 C2CD4CQ8TF44 421 aa12.47□□□□□ -0.41
SHMT2-225ENST00000556798 FMC1Q96HJ9 113 aa12.47□□□□□ -0.41
SHMT2-225ENST00000556798 LINC00467Q9BRT7 94 aa12.47□□□□□ -0.41
SHMT2-225ENST00000556798 NOP10Q9NPE3 64 aaKnown RBP12.47□□□□□ -0.41
SHMT2-225ENST00000556798 TRAV21A0A0B4J279 112 aa12.46□□□□□ -0.41
SHMT2-225ENST00000556798 TMEM183BQ1AE95 376 aa12.46□□□□□ -0.41
SHMT2-225ENST00000556798 ANXA2RQ3ZCQ2 193 aa12.46□□□□□ -0.41
SHMT2-225ENST00000556798 SMUG1Q53HV7 270 aa12.46□□□□□ -0.41
SHMT2-225ENST00000556798 SAPCD1Q5SSQ6 148 aa12.46□□□□□ -0.41
SHMT2-225ENST00000556798 C11orf72Q8NBR9 251 aa12.46□□□□□ -0.41
SHMT2-225ENST00000556798 GSN-AS1Q9NRJ2 163 aa12.46□□□□□ -0.41
SHMT2-225ENST00000556798 KLF12Q9Y4X4 402 aa12.46□□□□□ -0.41
SHMT2-225ENST00000556798 DYNC2H1Q8NCM8 4307 aaKnown RBP12.46□□□□□ -0.42
SHMT2-225ENST00000556798 TEX48A0A1B0GUV7 120 aa12.45□□□□□ -0.42
SHMT2-225ENST00000556798 NUPR2A6NF83 97 aa12.45□□□□□ -0.42
SHMT2-225ENST00000556798 LYRM9A8MSI8 78 aa12.45□□□□□ -0.42
SHMT2-225ENST00000556798 SNURFLB1AK76 121 aa12.45□□□□□ -0.42
SHMT2-225ENST00000556798 MEF2BQ02080 365 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-225ENST00000556798 TEX261Q6UWH6 196 aa12.45□□□□□ -0.42
SHMT2-225ENST00000556798 FAM159AQ6UWV7 190 aa12.45□□□□□ -0.42
SHMT2-225ENST00000556798 ZNF680Q8NEM1 530 aa12.45□□□□□ -0.42
SHMT2-225ENST00000556798 PCNPQ8WW12 178 aaKnown RBP12.45□□□□□ -0.42
SHMT2-225ENST00000556798 TIMM8BQ9Y5J9 83 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-225ENST00000556798 DEFB130BP0DP73 79 aa12.44□□□□□ -0.42
SHMT2-225ENST00000556798 DEFB130AP0DP74 79 aa12.44□□□□□ -0.42
SHMT2-225ENST00000556798 DAD1P61803 113 aa12.44□□□□□ -0.42
SHMT2-225ENST00000556798 CEMP1Q6PRD7 247 aaPredicted RBP12.44□□□□□ -0.42
SHMT2-225ENST00000556798 TMEM183AQ8IXX5 376 aa12.44□□□□□ -0.42
SHMT2-225ENST00000556798 NHLRC2Q8NBF2 726 aa12.44□□□□□ -0.42
SHMT2-225ENST00000556798 LYPD6BQ8NI32 183 aa12.44□□□□□ -0.42
SHMT2-225ENST00000556798 ZC2HC1AQ96GY0 325 aa12.44□□□□□ -0.42
SHMT2-225ENST00000556798 DERL1Q9BUN8 251 aa12.44□□□□□ -0.42
SHMT2-225ENST00000556798 TRBV6-1A0A0K0K1D8 114 aa12.43□□□□□ -0.42
SHMT2-225ENST00000556798 LTAP01374 205 aa12.43□□□□□ -0.42
SHMT2-225ENST00000556798 PFN1P07737 140 aaKnown RBP12.43□□□□□ -0.42
SHMT2-225ENST00000556798 C11orf52Q96A22 123 aa12.43□□□□□ -0.42
SHMT2-225ENST00000556798 TXNDC17Q9BRA2 123 aa12.43□□□□□ -0.42
SHMT2-225ENST00000556798 C11orf21Q9P2W6 132 aa12.43□□□□□ -0.42
SHMT2-225ENST00000556798 VAX2Q9UIW0 290 aa12.43□□□□□ -0.42
SHMT2-225ENST00000556798 ZFP30Q9Y2G7 519 aa12.43□□□□□ -0.42
SHMT2-225ENST00000556798 TRAV10A0A0B4J240 114 aa12.42□□□□□ -0.42
SHMT2-225ENST00000556798 HTN3P15516 51 aa12.42□□□□□ -0.42
SHMT2-225ENST00000556798 RPL35P42766 123 aaKnown RBP12.42□□□□□ -0.42
SHMT2-225ENST00000556798 TCL1AP56279 114 aa12.42□□□□□ -0.42
SHMT2-225ENST00000556798 MDFICQ9P1T7 246 aa12.42□□□□□ -0.42
SHMT2-225ENST00000556798 PLECQ15149 4684 aaKnown RBP12.42□□□□□ -0.42
SHMT2-225ENST00000556798 TRGV11A0A075B6L2 103 aa12.41□□□□□ -0.42
SHMT2-225ENST00000556798 DEFB131BA0A096LNP1 70 aa12.41□□□□□ -0.42
SHMT2-225ENST00000556798 GNRH2O43555 120 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms