RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 MYCNOSP40205 109 aa9.47□□□□□ -0.89
CCDC88C-211ENST00000556726 RPS20P60866 119 aaKnown RBP9.47□□□□□ -0.89
CCDC88C-211ENST00000556726 MTURNQ8N3F0 131 aa9.47□□□□□ -0.89
CCDC88C-211ENST00000556726 PRSS22Q9GZN4 317 aa9.47□□□□□ -0.89
CCDC88C-211ENST00000556726 GFRA4Q9GZZ7 299 aa9.47□□□□□ -0.89
CCDC88C-211ENST00000556726 SVEP1Q4LDE5 3571 aa9.47□□□□□ -0.89
CCDC88C-211ENST00000556726 IGLV11-55A0A075B6I3 123 aa9.46□□□□□ -0.89
CCDC88C-211ENST00000556726 TRAV41A0A0B4J266 112 aa9.46□□□□□ -0.89
CCDC88C-211ENST00000556726 GAS8-AS1O95177 125 aa9.46□□□□□ -0.89
CCDC88C-211ENST00000556726 EFNA4P52798 201 aa9.46□□□□□ -0.89
CCDC88C-211ENST00000556726 MRPS16Q9Y3D3 137 aaKnown RBP9.46□□□□□ -0.89
CCDC88C-211ENST00000556726 HOXB4P17483 251 aaPredicted RBP9.46□□□□□ -0.89
CCDC88C-211ENST00000556726 CTRLP40313 264 aa9.46□□□□□ -0.89
CCDC88C-211ENST00000556726 Q6ZQT7 251 aa9.46□□□□□ -0.89
CCDC88C-211ENST00000556726 C8orf31Q8N9H6 132 aa9.46□□□□□ -0.89
CCDC88C-211ENST00000556726 TNFRSF6BO95407 300 aa9.46□□□□□ -0.9
CCDC88C-211ENST00000556726 NBL1P41271 181 aa9.46□□□□□ -0.9
CCDC88C-211ENST00000556726 MRGPRG-AS1Q2M3A8 158 aa9.46□□□□□ -0.9
CCDC88C-211ENST00000556726 ZC2HC1BQ5TFG8 222 aa9.46□□□□□ -0.9
CCDC88C-211ENST00000556726 HIST1H4GQ99525 98 aa9.46□□□□□ -0.9
CCDC88C-211ENST00000556726 TGFAP01135 160 aa9.45□□□□□ -0.9
CCDC88C-211ENST00000556726 CRYGBP07316 175 aa9.45□□□□□ -0.9
CCDC88C-211ENST00000556726 TMEM95Q3KNT9 176 aa9.45□□□□□ -0.9
CCDC88C-211ENST00000556726 CFHR4Q92496 578 aa9.45□□□□□ -0.9
CCDC88C-211ENST00000556726 JMJD8Q96S16 334 aa9.45□□□□□ -0.9
CCDC88C-211ENST00000556726 CCL19Q99731 98 aa9.45□□□□□ -0.9
CCDC88C-211ENST00000556726 AGPAT4-IT1Q9H0P7 198 aa9.45□□□□□ -0.9
CCDC88C-211ENST00000556726 INS-IGF2F8WCM5 200 aa9.45□□□□□ -0.9
CCDC88C-211ENST00000556726 IGLV2-11P01706 119 aa9.45□□□□□ -0.9
CCDC88C-211ENST00000556726 SRSF9Q13242 221 aaKnown RBP eCLIP9.45□□□□□ -0.9
CCDC88C-211ENST00000556726 LYPD1Q8N2G4 141 aa9.45□□□□□ -0.9
CCDC88C-211ENST00000556726 RNASE8Q8TDE3 154 aaKnown RBP9.45□□□□□ -0.9
CCDC88C-211ENST00000556726 ZNF256Q9Y2P7 627 aaPredicted RBP9.45□□□□□ -0.9
CCDC88C-211ENST00000556726 MSRB2Q9Y3D2 182 aa9.45□□□□□ -0.9
CCDC88C-211ENST00000556726 RIPPLY3P57055 190 aa9.44□□□□□ -0.9
CCDC88C-211ENST00000556726 PLP1P60201 277 aa9.44□□□□□ -0.9
CCDC88C-211ENST00000556726 BVES-AS1Q5T3Y7 98 aa9.44□□□□□ -0.9
CCDC88C-211ENST00000556726 Q8N9W7 124 aa9.44□□□□□ -0.9
CCDC88C-211ENST00000556726 OR11H6Q8NGC7 330 aa9.44□□□□□ -0.9
CCDC88C-211ENST00000556726 PEF1Q9UBV8 284 aaKnown RBP9.44□□□□□ -0.9
CCDC88C-211ENST00000556726 FN1P02751 2386 aaKnown RBP9.44□□□□□ -0.9
CCDC88C-211ENST00000556726 H7C2G1 150 aa9.44□□□□□ -0.9
CCDC88C-211ENST00000556726 OVOL3O00110 214 aa9.44□□□□□ -0.9
CCDC88C-211ENST00000556726 FSTL3O95633 263 aa9.44□□□□□ -0.9
CCDC88C-211ENST00000556726 C8orf86Q6ZUL3 223 aa9.44□□□□□ -0.9
CCDC88C-211ENST00000556726 C11orf44Q8N8P7 122 aa9.44□□□□□ -0.9
CCDC88C-211ENST00000556726 SMIM12Q96EX1 92 aa9.44□□□□□ -0.9
CCDC88C-211ENST00000556726 K7EP13 123 aa9.44□□□□□ -0.9
CCDC88C-211ENST00000556726 ZNF688P0C7X2 276 aa9.44□□□□□ -0.9
CCDC88C-211ENST00000556726 GTF2H5Q6ZYL4 71 aa9.44□□□□□ -0.9
CCDC88C-211ENST00000556726 TRBV12-3P01733 135 aa9.43□□□□□ -0.9
CCDC88C-211ENST00000556726 DTX2Q86UW9 622 aa9.43□□□□□ -0.9
CCDC88C-211ENST00000556726 SCGB3A1Q96QR1 104 aa9.43□□□□□ -0.9
CCDC88C-211ENST00000556726 FAM231BA6NCW3 169 aa9.43□□□□□ -0.9
CCDC88C-211ENST00000556726 TNFRSF13BO14836 293 aaPredicted RBP9.43□□□□□ -0.9
CCDC88C-211ENST00000556726 IGF1P05019 195 aa9.43□□□□□ -0.9
CCDC88C-211ENST00000556726 BLCAPP62952 87 aa9.43□□□□□ -0.9
CCDC88C-211ENST00000556726 PDE6HQ13956 83 aa9.43□□□□□ -0.9
CCDC88C-211ENST00000556726 A0A087WWL8 130 aa9.43□□□□□ -0.9
CCDC88C-211ENST00000556726 A0A1B0GW15 77 aa9.43□□□□□ -0.9
CCDC88C-211ENST00000556726 ORAOV1Q8WV07 137 aa9.43□□□□□ -0.9
CCDC88C-211ENST00000556726 LINC00477Q96M19 166 aa9.43□□□□□ -0.9
CCDC88C-211ENST00000556726 A0A1W2PPR1 153 aa9.42□□□□□ -0.9
CCDC88C-211ENST00000556726 K7ERJ3 54 aa9.42□□□□□ -0.9
CCDC88C-211ENST00000556726 KIR3DS1Q14943 382 aa9.42□□□□□ -0.9
CCDC88C-211ENST00000556726 MINOS1Q5TGZ0 78 aa9.42□□□□□ -0.9
CCDC88C-211ENST00000556726 COL25A1Q9BXS0 654 aaPredicted RBP9.42□□□□□ -0.9
CCDC88C-211ENST00000556726 SPCS1Q9Y6A9 102 aa9.42□□□□□ -0.9
CCDC88C-211ENST00000556726 MINOS1-NBL1R4GNA1 71 aa9.42□□□□□ -0.9
CCDC88C-211ENST00000556726 LOC107984156A0A0G2JMH3 177 aa9.42□□□□□ -0.9
CCDC88C-211ENST00000556726 ARL17AQ8IVW1 177 aa9.42□□□□□ -0.9
CCDC88C-211ENST00000556726 PIMREGQ9BSJ6 248 aa9.42□□□□□ -0.9
CCDC88C-211ENST00000556726 IGHV3-64A0A075B6Q5 118 aa9.42□□□□□ -0.9
CCDC88C-211ENST00000556726 IGHV3OR16-12A0A075B7B8 117 aa9.42□□□□□ -0.9
CCDC88C-211ENST00000556726 IGHV2-70DA0A0C4DH43 119 aa9.42□□□□□ -0.9
CCDC88C-211ENST00000556726 CD7P09564 240 aa9.42□□□□□ -0.9
CCDC88C-211ENST00000556726 FABP2P12104 132 aa9.42□□□□□ -0.9
CCDC88C-211ENST00000556726 SLC50A1Q9BRV3 221 aa9.42□□□□□ -0.9
CCDC88C-211ENST00000556726 TRAV12-3A0A0B4J271 114 aa9.41□□□□□ -0.9
CCDC88C-211ENST00000556726 UBE2E1P51965 193 aa9.41□□□□□ -0.9
CCDC88C-211ENST00000556726 FAM159AQ6UWV7 190 aa9.41□□□□□ -0.9
CCDC88C-211ENST00000556726 PIP4P2Q8N4L2 257 aa9.41□□□□□ -0.9
CCDC88C-211ENST00000556726 TTC9CQ8N5M4 171 aa9.41□□□□□ -0.9
CCDC88C-211ENST00000556726 IGHV3-73A0A0B4J1V6 119 aa9.41□□□□□ -0.9
CCDC88C-211ENST00000556726 TMEM8BA6NDV4 472 aa9.41□□□□□ -0.9
CCDC88C-211ENST00000556726 ASIPP42127 132 aa9.41□□□□□ -0.9
CCDC88C-211ENST00000556726 ZNF56Q15929 161 aa9.41□□□□□ -0.9
CCDC88C-211ENST00000556726 WI2-2373I1.2A0A1W2PRP0 233 aa9.41□□□□□ -0.9
CCDC88C-211ENST00000556726 GAGE12BA1L429 117 aa9.41□□□□□ -0.9
CCDC88C-211ENST00000556726 IGKCP01834 107 aa9.41□□□□□ -0.9
CCDC88C-211ENST00000556726 IGHV4-38-2P0DP08 117 aa9.41□□□□□ -0.9
CCDC88C-211ENST00000556726 CD300EQ496F6 205 aaPredicted RBP9.41□□□□□ -0.9
CCDC88C-211ENST00000556726 OR4X2Q8NGF9 303 aa9.41□□□□□ -0.9
CCDC88C-211ENST00000556726 OR2K2Q8NGT1 345 aa9.41□□□□□ -0.9
CCDC88C-211ENST00000556726 MEGF9Q9H1U4 602 aa9.41□□□□□ -0.9
CCDC88C-211ENST00000556726 C19orf84I3L1E1 186 aa9.4□□□□□ -0.9
CCDC88C-211ENST00000556726 K7ERU9 68 aa9.4□□□□□ -0.9
CCDC88C-211ENST00000556726 FAM110DQ8TAY7 271 aaPredicted RBP9.4□□□□□ -0.9
CCDC88C-211ENST00000556726 MS4A6AQ9H2W1 248 aa9.4□□□□□ -0.9
CCDC88C-211ENST00000556726 LY6LH3BQJ8 138 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms