RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 SLC39A9Q9NUM3 307 aa8.67□□□□□ -1.02
SHMT2-223ENST00000556689 TRGV2A0A075B6R0 118 aa8.66□□□□□ -1.02
SHMT2-223ENST00000556689 A0A1W2PPV4 95 aa8.66□□□□□ -1.02
SHMT2-223ENST00000556689 MRPS12O15235 138 aaKnown RBP8.66□□□□□ -1.02
SHMT2-223ENST00000556689 RAB2AP61019 212 aa8.66□□□□□ -1.02
SHMT2-223ENST00000556689 C10orf113Q5VZT2 155 aa8.66□□□□□ -1.02
SHMT2-223ENST00000556689 LCN15Q6UWW0 184 aa8.66□□□□□ -1.02
SHMT2-223ENST00000556689 PATE2Q6UY27 113 aa8.66□□□□□ -1.02
SHMT2-223ENST00000556689 DPPA3Q6W0C5 159 aa8.66□□□□□ -1.02
SHMT2-223ENST00000556689 Q6ZTI0 123 aa8.66□□□□□ -1.02
SHMT2-223ENST00000556689 NFE4Q86UQ8 179 aa8.66□□□□□ -1.02
SHMT2-223ENST00000556689 TMED6Q8WW62 240 aa8.66□□□□□ -1.02
SHMT2-223ENST00000556689 SLC50A1Q9BRV3 221 aa8.66□□□□□ -1.02
SHMT2-223ENST00000556689 ARV1Q9H2C2 271 aa8.66□□□□□ -1.02
SHMT2-223ENST00000556689 CYTL1Q9NRR1 136 aa8.66□□□□□ -1.02
SHMT2-223ENST00000556689 TNFRSF18Q9Y5U5 241 aa8.66□□□□□ -1.02
SHMT2-223ENST00000556689 DMBT1Q9UGM3 2413 aaPredicted RBP8.66□□□□□ -1.02
SHMT2-223ENST00000556689 VPS13BQ7Z7G8 4022 aa8.65□□□□□ -1.02
SHMT2-223ENST00000556689 MYCBP2O75592 4640 aa8.65□□□□□ -1.02
SHMT2-223ENST00000556689 TRAV12-3A0A0B4J271 114 aa8.65□□□□□ -1.02
SHMT2-223ENST00000556689 FAM229AH3BQW9 127 aa8.65□□□□□ -1.02
SHMT2-223ENST00000556689 J3KRW8 73 aa8.65□□□□□ -1.02
SHMT2-223ENST00000556689 SMR3BP02814 79 aaPredicted RBP8.65□□□□□ -1.02
SHMT2-223ENST00000556689 SNRPCP09234 159 aaKnown RBP8.65□□□□□ -1.02
SHMT2-223ENST00000556689 TAS2R45P59539 299 aa8.65□□□□□ -1.02
SHMT2-223ENST00000556689 KRTAP10-1P60331 282 aa8.65□□□□□ -1.02
SHMT2-223ENST00000556689 MIC13Q5XKP0 118 aa8.65□□□□□ -1.02
SHMT2-223ENST00000556689 PYGO2Q9BRQ0 406 aa8.65□□□□□ -1.02
SHMT2-223ENST00000556689 MRPL32Q9BYC8 188 aaKnown RBP8.65□□□□□ -1.02
SHMT2-223ENST00000556689 SH3BGRL3Q9H299 93 aa8.65□□□□□ -1.02
SHMT2-223ENST00000556689 TRAV9-2A0A087WT02 112 aa8.64□□□□□ -1.03
SHMT2-223ENST00000556689 PRAC2D3DTV9 90 aa8.64□□□□□ -1.03
SHMT2-223ENST00000556689 NXPH4O95158 308 aa8.64□□□□□ -1.03
SHMT2-223ENST00000556689 LEPP41159 167 aa8.64□□□□□ -1.03
SHMT2-223ENST00000556689 RAB14P61106 215 aa8.64□□□□□ -1.03
SHMT2-223ENST00000556689 ICAM4Q14773 271 aa8.64□□□□□ -1.03
SHMT2-223ENST00000556689 KHDC3LQ587J8 217 aa8.64□□□□□ -1.03
SHMT2-223ENST00000556689 BPIFA4PQ86YQ2 179 aa8.64□□□□□ -1.03
SHMT2-223ENST00000556689 OR10G4Q8NGN3 311 aa8.64□□□□□ -1.03
SHMT2-223ENST00000556689 OR10G9Q8NGN4 311 aa8.64□□□□□ -1.03
SHMT2-223ENST00000556689 OR10G7Q8NGN6 311 aa8.64□□□□□ -1.03
SHMT2-223ENST00000556689 C18orf15Q96N68 181 aa8.64□□□□□ -1.03
SHMT2-223ENST00000556689 MDFICQ9P1T7 246 aa8.64□□□□□ -1.03
SHMT2-223ENST00000556689 BOLA1Q9Y3E2 137 aa8.64□□□□□ -1.03
SHMT2-223ENST00000556689 A0A087WTM6 91 aa8.63□□□□□ -1.03
SHMT2-223ENST00000556689 PAX4O43316 350 aa8.63□□□□□ -1.03
SHMT2-223ENST00000556689 CT45A10P0DMU9 189 aa8.63□□□□□ -1.03
SHMT2-223ENST00000556689 CDC34P49427 236 aaPredicted RBP8.63□□□□□ -1.03
SHMT2-223ENST00000556689 TEX261Q6UWH6 196 aa8.63□□□□□ -1.03
SHMT2-223ENST00000556689 ALKAL2Q6UX46 152 aa8.63□□□□□ -1.03
SHMT2-223ENST00000556689 LINC00305Q7Z4B0 112 aa8.63□□□□□ -1.03
SHMT2-223ENST00000556689 ODF3Q96PU9 254 aa8.63□□□□□ -1.03
SHMT2-223ENST00000556689 ACTR3CQ9C0K3 210 aaPredicted RBP8.63□□□□□ -1.03
SHMT2-223ENST00000556689 DNAJC4Q9NNZ3 241 aa8.63□□□□□ -1.03
SHMT2-223ENST00000556689 GSN-AS1Q9NRJ2 163 aa8.63□□□□□ -1.03
SHMT2-223ENST00000556689 ICOSQ9Y6W8 199 aa8.63□□□□□ -1.03
SHMT2-223ENST00000556689 TRGV1A0A0A0MS02 117 aa8.62□□□□□ -1.03
SHMT2-223ENST00000556689 ZNF324O75467 553 aaPredicted RBP8.62□□□□□ -1.03
SHMT2-223ENST00000556689 DNAH10OSP0CZ25 163 aa8.62□□□□□ -1.03
SHMT2-223ENST00000556689 GCSHP23434 173 aa8.62□□□□□ -1.03
SHMT2-223ENST00000556689 FAM122CQ6P4D5 195 aa8.62□□□□□ -1.03
SHMT2-223ENST00000556689 ZNF680Q8NEM1 530 aa8.62□□□□□ -1.03
SHMT2-223ENST00000556689 FAM213BQ8TBF2 198 aa8.62□□□□□ -1.03
SHMT2-223ENST00000556689 FUT9Q9Y231 359 aa8.62□□□□□ -1.03
SHMT2-223ENST00000556689 CTXND1A0A1B0GTU2 59 aa8.61□□□□□ -1.03
SHMT2-223ENST00000556689 H3BTX0 84 aa8.61□□□□□ -1.03
SHMT2-223ENST00000556689 SLC17A3O00476 420 aa8.61□□□□□ -1.03
SHMT2-223ENST00000556689 SLC25A5P05141 298 aaKnown RBP8.61□□□□□ -1.03
SHMT2-223ENST00000556689 BLOC1S1P78537 153 aa8.61□□□□□ -1.03
SHMT2-223ENST00000556689 LYPD5Q6UWN5 251 aa8.61□□□□□ -1.03
SHMT2-223ENST00000556689 IQCF2Q8IXL9 164 aa8.61□□□□□ -1.03
SHMT2-223ENST00000556689 SAT2Q96F10 170 aaPredicted RBP8.61□□□□□ -1.03
SHMT2-223ENST00000556689 NPIPB6E9PJ23 425 aa8.6□□□□□ -1.03
SHMT2-223ENST00000556689 J3QL48 77 aa8.6□□□□□ -1.03
SHMT2-223ENST00000556689 OR7C2O60412 319 aa8.6□□□□□ -1.03
SHMT2-223ENST00000556689 SULT1A2P50226 295 aa8.6□□□□□ -1.03
SHMT2-223ENST00000556689 SLAQ13239 276 aa8.6□□□□□ -1.03
SHMT2-223ENST00000556689 C11orf72Q8NBR9 251 aa8.6□□□□□ -1.03
SHMT2-223ENST00000556689 TMEM37Q8WXS4 190 aa8.6□□□□□ -1.03
SHMT2-223ENST00000556689 PRO0255Q9UI72 69 aa8.6□□□□□ -1.03
SHMT2-223ENST00000556689 C7orf71A4D174 169 aa8.59□□□□□ -1.03
SHMT2-223ENST00000556689 MAP1LC3B2A6NCE7 125 aa8.59□□□□□ -1.03
SHMT2-223ENST00000556689 H3BQ15 152 aa8.59□□□□□ -1.03
SHMT2-223ENST00000556689 K7EP13 123 aa8.59□□□□□ -1.03
SHMT2-223ENST00000556689 SPINK4O60575 86 aa8.59□□□□□ -1.03
SHMT2-223ENST00000556689 IFNA1P01562 189 aa8.59□□□□□ -1.03
SHMT2-223ENST00000556689 IGLC2P0DOY2 106 aa8.59□□□□□ -1.03
SHMT2-223ENST00000556689 MRPL23Q16540 153 aaKnown RBP8.59□□□□□ -1.03
SHMT2-223ENST00000556689 GUK1Q16774 197 aa8.59□□□□□ -1.03
SHMT2-223ENST00000556689 ANXA2RQ3ZCQ2 193 aa8.59□□□□□ -1.03
SHMT2-223ENST00000556689 MORN5Q5VZ52 161 aa8.59□□□□□ -1.03
SHMT2-223ENST00000556689 PQLC2Q6ZP29 291 aa8.59□□□□□ -1.03
SHMT2-223ENST00000556689 EIF4E3Q8N5X7 224 aaKnown RBP8.59□□□□□ -1.03
SHMT2-223ENST00000556689 LINC00467Q9BRT7 94 aa8.59□□□□□ -1.03
SHMT2-223ENST00000556689 MAP1LC3BQ9GZQ8 125 aa8.59□□□□□ -1.03
SHMT2-223ENST00000556689 HHLA3Q9XRX5 114 aa8.59□□□□□ -1.03
SHMT2-223ENST00000556689 KLF12Q9Y4X4 402 aa8.59□□□□□ -1.03
SHMT2-223ENST00000556689 LY96Q9Y6Y9 160 aa8.59□□□□□ -1.03
SHMT2-223ENST00000556689 SRRM2Q9UQ35 2752 aaKnown RBP8.58□□□□□ -1.04
SHMT2-223ENST00000556689 CXorf1O96002 111 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms