RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 GZMBP10144 247 aa2.25□□□□□ -2.05
LINC00643-204ENST00000555934 IFITM1P13164 125 aa2.25□□□□□ -2.05
LINC00643-204ENST00000555934 LSM3P62310 102 aaKnown RBP2.25□□□□□ -2.05
LINC00643-204ENST00000555934 ZNF90Q03938 601 aa2.25□□□□□ -2.05
LINC00643-204ENST00000555934 MIAQ16674 131 aa2.25□□□□□ -2.05
LINC00643-204ENST00000555934 PYY3Q5JQD4 70 aa2.25□□□□□ -2.05
LINC00643-204ENST00000555934 CLLU1Q5K131 121 aa2.25□□□□□ -2.05
LINC00643-204ENST00000555934 LINC01545Q5VT33 79 aa2.25□□□□□ -2.05
LINC00643-204ENST00000555934 PATE2Q6UY27 113 aa2.25□□□□□ -2.05
LINC00643-204ENST00000555934 C2orf91Q6ZV80 131 aa2.25□□□□□ -2.05
LINC00643-204ENST00000555934 SVBPQ8N300 66 aa2.25□□□□□ -2.05
LINC00643-204ENST00000555934 LINC00471Q8N535 108 aa2.25□□□□□ -2.05
LINC00643-204ENST00000555934 C3orf56Q8N813 242 aa2.25□□□□□ -2.05
LINC00643-204ENST00000555934 SMCR5Q8TEV8 140 aa2.25□□□□□ -2.05
LINC00643-204ENST00000555934 SEC11CQ9BY50 192 aa2.25□□□□□ -2.05
LINC00643-204ENST00000555934 AGPAT4-IT1Q9H0P7 198 aa2.25□□□□□ -2.05
LINC00643-204ENST00000555934 PSORS1C2Q9UIG4 136 aa2.25□□□□□ -2.05
LINC00643-204ENST00000555934 LSM2Q9Y333 95 aaKnown RBP2.25□□□□□ -2.05
LINC00643-204ENST00000555934 CHCHD2Q9Y6H1 151 aaPredicted RBP2.25□□□□□ -2.05
LINC00643-204ENST00000555934 COL1A1P02452 1464 aaPredicted RBP2.25□□□□□ -2.05
LINC00643-204ENST00000555934 KDM5AP29375 1690 aaKnown RBP2.25□□□□□ -2.05
LINC00643-204ENST00000555934 OBSL1O75147 1896 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 TRPM2O94759 1503 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 EML6Q6ZMW3 1958 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 A0A0D9SG52 128 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 MUC21A0A0G2JKD1 596 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 MUC21A0A140T8X8 626 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 C11orf86A6NJI1 115 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 H3BRN7 92 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 OR1I1O60431 355 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 CTSDP07339 412 aaPredicted RBP2.24□□□□□ -2.05
LINC00643-204ENST00000555934 UBA52P62987 128 aaKnown RBP2.24□□□□□ -2.05
LINC00643-204ENST00000555934 DYNLT1P63172 113 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 KLRD1Q13241 179 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 Q56UQ5 140 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 C9orf153Q5TBE3 101 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 Q6ZUT4 128 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 SLC35E3Q7Z769 313 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 C10orf111Q8N326 155 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 PFN4Q8NHR9 129 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 SLC35B3Q9H1N7 401 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 PRO1933Q9H354 126 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 SAR1AQ9NR31 198 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 FKBP11Q9NYL4 201 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 NOP16Q9Y3C1 178 aaKnown RBP2.24□□□□□ -2.05
LINC00643-204ENST00000555934 COL5A3P25940 1745 aaPredicted RBP2.24□□□□□ -2.05
LINC00643-204ENST00000555934 AKAP11Q9UKA4 1901 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 IQGAP1P46940 1657 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 RTEL1-TNFRSF6BF6WH68 1400 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 RIMBP3CA6NJZ7 1639 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 RIMBP3BA6NNM3 1639 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 MYO3AQ8NEV4 1616 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 USP32Q8NFA0 1604 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 RIMBP3Q9UFD9 1639 aa2.24□□□□□ -2.05
LINC00643-204ENST00000555934 SCAF11Q99590 1463 aaKnown RBP2.23□□□□□ -2.05
LINC00643-204ENST00000555934 OR51F1A6NGY5 319 aa2.23□□□□□ -2.05
LINC00643-204ENST00000555934 H3BT86 120 aa2.23□□□□□ -2.05
LINC00643-204ENST00000555934 APOC4-APOC2K7ER74 178 aa2.23□□□□□ -2.05
LINC00643-204ENST00000555934 TCL1BO95988 128 aa2.23□□□□□ -2.05
LINC00643-204ENST00000555934 APOC2P02655 101 aa2.23□□□□□ -2.05
LINC00643-204ENST00000555934 PMP2P02689 132 aa2.23□□□□□ -2.05
LINC00643-204ENST00000555934 RBP4P02753 201 aa2.23□□□□□ -2.05
LINC00643-204ENST00000555934 CD3DP04234 171 aa2.23□□□□□ -2.05
LINC00643-204ENST00000555934 TPT1P13693 172 aaKnown RBP2.23□□□□□ -2.05
LINC00643-204ENST00000555934 CDK5R1Q15078 307 aa2.23□□□□□ -2.05
LINC00643-204ENST00000555934 KHDC3LQ587J8 217 aa2.23□□□□□ -2.05
LINC00643-204ENST00000555934 PCOTHQ58A44 107 aa2.23□□□□□ -2.05
LINC00643-204ENST00000555934 FAM216BQ8N7L0 139 aa2.23□□□□□ -2.05
LINC00643-204ENST00000555934 LCN9Q8WX39 176 aa2.23□□□□□ -2.05
LINC00643-204ENST00000555934 LINC00526Q96FQ7 95 aa2.23□□□□□ -2.05
LINC00643-204ENST00000555934 SERP1Q9Y6X1 66 aa2.23□□□□□ -2.05
LINC00643-204ENST00000555934 SLX4Q8IY92 1834 aa2.23□□□□□ -2.05
LINC00643-204ENST00000555934 DEPDC5O75140 1603 aa2.23□□□□□ -2.05
LINC00643-204ENST00000555934 MADDQ8WXG6 1647 aa2.23□□□□□ -2.05
LINC00643-204ENST00000555934 STRCP1A6NGW2 1772 aa2.23□□□□□ -2.05
LINC00643-204ENST00000555934 SAMD9LQ8IVG5 1584 aa2.23□□□□□ -2.05
LINC00643-204ENST00000555934 INO80Q9ULG1 1556 aaPredicted RBP2.23□□□□□ -2.05
LINC00643-204ENST00000555934 ANKRD36BQ8N2N9 1353 aa2.23□□□□□ -2.05
LINC00643-204ENST00000555934 COL4A2P08572 1712 aa2.22□□□□□ -2.05
LINC00643-204ENST00000555934 LMTK2Q8IWU2 1503 aa2.22□□□□□ -2.05
LINC00643-204ENST00000555934 ASXL1Q8IXJ9 1541 aa2.22□□□□□ -2.05
LINC00643-204ENST00000555934 NUP98P52948 1817 aa2.22□□□□□ -2.05
LINC00643-204ENST00000555934 FANCAO15360 1455 aa2.22□□□□□ -2.05
LINC00643-204ENST00000555934 ATP10BO94823 1461 aa2.22□□□□□ -2.05
LINC00643-204ENST00000555934 NKTRP30414 1462 aaKnown RBP2.22□□□□□ -2.05
LINC00643-204ENST00000555934 IQSEC2Q5JU85 1478 aa2.22□□□□□ -2.05
LINC00643-204ENST00000555934 NLRP1Q9C000 1473 aa2.22□□□□□ -2.05
LINC00643-204ENST00000555934 NRXN1Q9ULB1 1477 aa2.22□□□□□ -2.05
LINC00643-204ENST00000555934 SHROOM2Q13796 1616 aa2.22□□□□□ -2.05
LINC00643-204ENST00000555934 IGLV3-9A0A075B6K5 115 aa2.22□□□□□ -2.05
LINC00643-204ENST00000555934 A0A0G2JQZ4 141 aa2.22□□□□□ -2.05
LINC00643-204ENST00000555934 C3orf85A0A1B0GTC6 90 aa2.22□□□□□ -2.05
LINC00643-204ENST00000555934 TCRBV3S1A0A5B6 114 aa2.22□□□□□ -2.05
LINC00643-204ENST00000555934 H3BPC8 53 aa2.22□□□□□ -2.05
LINC00643-204ENST00000555934 SDCBPO00560 298 aaPredicted RBP2.22□□□□□ -2.05
LINC00643-204ENST00000555934 PITX3O75364 302 aa2.22□□□□□ -2.05
LINC00643-204ENST00000555934 MSMBP08118 114 aa2.22□□□□□ -2.05
LINC00643-204ENST00000555934 FABP4P15090 132 aa2.22□□□□□ -2.05
LINC00643-204ENST00000555934 XCL1P47992 114 aa2.22□□□□□ -2.05
LINC00643-204ENST00000555934 PCBD1P61457 104 aa2.22□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms