RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 COPZ1P61923 177 aa2.44□□□□□ -2.02
SCFD1-208ENST00000553278 CCSMST1Q4G0I0 132 aa2.44□□□□□ -2.02
SCFD1-208ENST00000553278 ZCCHC23Q6ZST2 131 aa2.44□□□□□ -2.02
SCFD1-208ENST00000553278 USP54Q70EL1 1684 aa2.44□□□□□ -2.02
SCFD1-208ENST00000553278 NUPR1O60356 82 aa2.43□□□□□ -2.02
SCFD1-208ENST00000553278 TPST1O60507 370 aa2.43□□□□□ -2.02
SCFD1-208ENST00000553278 CD3DP04234 171 aa2.43□□□□□ -2.02
SCFD1-208ENST00000553278 UNQ6190/PRO20217Q6UXQ8 127 aa2.43□□□□□ -2.02
SCFD1-208ENST00000553278 C1orf54Q8WWF1 131 aa2.43□□□□□ -2.02
SCFD1-208ENST00000553278 SYNJ1O43426 1573 aa2.43□□□□□ -2.02
SCFD1-208ENST00000553278 MUC4Q99102 2169 aa2.42□□□□□ -2.02
SCFD1-208ENST00000553278 IGKV3D-7A0A0C4DH55 119 aa2.42□□□□□ -2.02
SCFD1-208ENST00000553278 IGKV3OR2-268A0A0C4DH90 116 aa2.42□□□□□ -2.02
SCFD1-208ENST00000553278 BBIP1A8MTZ0 92 aa2.42□□□□□ -2.02
SCFD1-208ENST00000553278 M0R2N4 97 aa2.42□□□□□ -2.02
SCFD1-208ENST00000553278 PLGLB1Q02325 96 aa2.42□□□□□ -2.02
SCFD1-208ENST00000553278 NEDD8Q15843 81 aa2.42□□□□□ -2.02
SCFD1-208ENST00000553278 CLLU1Q5K131 121 aa2.42□□□□□ -2.02
SCFD1-208ENST00000553278 RPL13AP3Q6NVV1 102 aa2.42□□□□□ -2.02
SCFD1-208ENST00000553278 KRTAP13-1Q8IUC0 172 aa2.42□□□□□ -2.02
SCFD1-208ENST00000553278 SDK1Q7Z5N4 2213 aa2.42□□□□□ -2.02
SCFD1-208ENST00000553278 FGD6Q6ZV73 1430 aa2.42□□□□□ -2.02
SCFD1-208ENST00000553278 CECR2Q9BXF3 1484 aa2.41□□□□□ -2.02
SCFD1-208ENST00000553278 PTPRFP10586 1907 aa2.41□□□□□ -2.02
SCFD1-208ENST00000553278 FAM236AA0A1B0GUQ0 79 aa2.41□□□□□ -2.02
SCFD1-208ENST00000553278 FAM236BA0A1B0GV22 79 aa2.41□□□□□ -2.02
SCFD1-208ENST00000553278 NPFFO15130 113 aa2.41□□□□□ -2.02
SCFD1-208ENST00000553278 INE1O15225 51 aa2.41□□□□□ -2.02
SCFD1-208ENST00000553278 IGHV3-33P01772 117 aa2.41□□□□□ -2.02
SCFD1-208ENST00000553278 SELENOWP63302 87 aa2.41□□□□□ -2.02
SCFD1-208ENST00000553278 C5orf17Q8NAS9 161 aa2.41□□□□□ -2.02
SCFD1-208ENST00000553278 LOC110117498A0A087WWA1 95 aa2.4□□□□□ -2.03
SCFD1-208ENST00000553278 J3QKU1 62 aa2.4□□□□□ -2.03
SCFD1-208ENST00000553278 GEMIN2O14893 280 aaKnown RBP2.4□□□□□ -2.03
SCFD1-208ENST00000553278 DNAL4O96015 105 aa2.4□□□□□ -2.03
SCFD1-208ENST00000553278 IZUMO2Q6UXV1 221 aa2.4□□□□□ -2.03
SCFD1-208ENST00000553278 ARL11Q969Q4 196 aa2.4□□□□□ -2.03
SCFD1-208ENST00000553278 TMEM14CQ9P0S9 112 aa2.4□□□□□ -2.03
SCFD1-208ENST00000553278 CCL25O15444 150 aa2.39□□□□□ -2.03
SCFD1-208ENST00000553278 IL9P15248 144 aa2.39□□□□□ -2.03
SCFD1-208ENST00000553278 ATOH7Q8N100 152 aa2.39□□□□□ -2.03
SCFD1-208ENST00000553278 LSM2Q9Y333 95 aaKnown RBP2.39□□□□□ -2.03
SCFD1-208ENST00000553278 EXPH5Q8NEV8 1989 aa2.39□□□□□ -2.03
SCFD1-208ENST00000553278 UNC13CQ8NB66 2214 aa2.38□□□□□ -2.03
SCFD1-208ENST00000553278 IGKV3-7A0A075B6H7 116 aa2.38□□□□□ -2.03
SCFD1-208ENST00000553278 TRBV20-1A0A075B6N2 111 aa2.38□□□□□ -2.03
SCFD1-208ENST00000553278 IGKV2-40A0A087WW87 121 aaPredicted RBP2.38□□□□□ -2.03
SCFD1-208ENST00000553278 A6NN06 94 aa2.38□□□□□ -2.03
SCFD1-208ENST00000553278 ZNF670-ZNF695F2Z2N8 137 aa2.38□□□□□ -2.03
SCFD1-208ENST00000553278 IGKV2D-40P01614 121 aaPredicted RBP2.38□□□□□ -2.03
SCFD1-208ENST00000553278 TCTEX1D1Q8N7M0 179 aa2.38□□□□□ -2.03
SCFD1-208ENST00000553278 PEG3Q9GZU2 1588 aa2.38□□□□□ -2.03
SCFD1-208ENST00000553278 SAR1AQ9NR31 198 aa2.38□□□□□ -2.03
SCFD1-208ENST00000553278 SIPA1L2Q9P2F8 1722 aaPredicted RBP2.37□□□□□ -2.03
SCFD1-208ENST00000553278 IGLV3-32A0A0A0MS00 114 aa2.37□□□□□ -2.03
SCFD1-208ENST00000553278 LINC00299Q6ZSB3 139 aa2.37□□□□□ -2.03
SCFD1-208ENST00000553278 C3orf62Q6ZUJ4 267 aa2.37□□□□□ -2.03
SCFD1-208ENST00000553278 LINC00470Q9BZP3 86 aa2.37□□□□□ -2.03
SCFD1-208ENST00000553278 ADGRB2O60241 1585 aa2.36□□□□□ -2.03
SCFD1-208ENST00000553278 NCOA3Q9Y6Q9 1424 aa2.36□□□□□ -2.03
SCFD1-208ENST00000553278 CHD3Q12873 2000 aaKnown RBP2.36□□□□□ -2.03
SCFD1-208ENST00000553278 TRBV6-7A0A0A0MS04 114 aa2.36□□□□□ -2.03
SCFD1-208ENST00000553278 ZNF25P17030 456 aaPredicted RBP2.36□□□□□ -2.03
SCFD1-208ENST00000553278 RRAS2P62070 204 aaPredicted RBP2.36□□□□□ -2.03
SCFD1-208ENST00000553278 LINC00322Q6ZN03 302 aaPredicted RBP2.36□□□□□ -2.03
SCFD1-208ENST00000553278 IDO2Q6ZQW0 420 aa2.36□□□□□ -2.03
SCFD1-208ENST00000553278 ATP6V0E2Q8NHE4 81 aa2.36□□□□□ -2.03
SCFD1-208ENST00000553278 TMEM191AQ9H0A3 160 aa2.36□□□□□ -2.03
SCFD1-208ENST00000553278 SIP14410 1827 aa2.35□□□□□ -2.03
SCFD1-208ENST00000553278 KIAA1549LQ6ZVL6 1849 aa2.35□□□□□ -2.03
SCFD1-208ENST00000553278 TNRC6BQ9UPQ9 1833 aaKnown RBP2.35□□□□□ -2.03
SCFD1-208ENST00000553278 HELZP42694 1942 aaKnown RBP2.35□□□□□ -2.03
SCFD1-208ENST00000553278 ALPK3Q96L96 1907 aa2.35□□□□□ -2.03
SCFD1-208ENST00000553278 UHRF1BP1LA0JNW5 1464 aa2.35□□□□□ -2.03
SCFD1-208ENST00000553278 A0A1W2PPB8 328 aa2.35□□□□□ -2.03
SCFD1-208ENST00000553278 A0A1W2PRS3 328 aa2.35□□□□□ -2.03
SCFD1-208ENST00000553278 KIR3DP1A8MWS1 328 aa2.35□□□□□ -2.03
SCFD1-208ENST00000553278 JMJD7-PLA2G4BH0Y9G9 81 aa2.35□□□□□ -2.03
SCFD1-208ENST00000553278 M0R2P5 195 aa2.35□□□□□ -2.03
SCFD1-208ENST00000553278 CDC42EP2O14613 210 aa2.35□□□□□ -2.03
SCFD1-208ENST00000553278 PPYP01298 95 aa2.35□□□□□ -2.03
SCFD1-208ENST00000553278 EMX2Q04743 252 aa2.35□□□□□ -2.03
SCFD1-208ENST00000553278 GDF5OSQ5U4N7 250 aa2.35□□□□□ -2.03
SCFD1-208ENST00000553278 KRTAP5-5Q701N2 237 aaPredicted RBP2.35□□□□□ -2.03
SCFD1-208ENST00000553278 SNX29P2Q8IUI4 249 aa2.35□□□□□ -2.03
SCFD1-208ENST00000553278 NOP16Q9Y3C1 178 aaKnown RBP2.35□□□□□ -2.03
SCFD1-208ENST00000553278 WDR97A6NE52 1622 aa2.35□□□□□ -2.03
SCFD1-208ENST00000553278 COL4A1P02462 1669 aa2.34□□□□□ -2.03
SCFD1-208ENST00000553278 FAM25AB3EWG3 89 aa2.34□□□□□ -2.03
SCFD1-208ENST00000553278 FAM25CB3EWG5 89 aa2.34□□□□□ -2.03
SCFD1-208ENST00000553278 FAM25GB3EWG6 89 aa2.34□□□□□ -2.03
SCFD1-208ENST00000553278 GNG7O60262 68 aa2.34□□□□□ -2.03
SCFD1-208ENST00000553278 ADCYAP1P18509 176 aa2.34□□□□□ -2.03
SCFD1-208ENST00000553278 GUCA1AP43080 201 aaPredicted RBP2.34□□□□□ -2.03
SCFD1-208ENST00000553278 KRTAP12-3P60328 96 aa2.34□□□□□ -2.03
SCFD1-208ENST00000553278 SPRNQ5BIV9 151 aa2.34□□□□□ -2.03
SCFD1-208ENST00000553278 ATP11AUNQ6ZP68 121 aa2.34□□□□□ -2.03
SCFD1-208ENST00000553278 DEFB119Q8N690 84 aa2.34□□□□□ -2.03
SCFD1-208ENST00000553278 MRPL57Q9BQC6 102 aaKnown RBP2.34□□□□□ -2.03
SCFD1-208ENST00000553278 TAS2R8Q9NYW2 309 aa2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms