RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 C19orf71A6NCJ1 209 aa7.01□□□□□ -1.29
LIMA1-211ENST00000552338 GNG4P50150 75 aa7.01□□□□□ -1.29
LIMA1-211ENST00000552338 SMUG1Q53HV7 270 aa7.01□□□□□ -1.29
LIMA1-211ENST00000552338 CENPWQ5EE01 88 aa7.01□□□□□ -1.29
LIMA1-211ENST00000552338 FAM231DQ6ZW35 169 aa7.01□□□□□ -1.29
LIMA1-211ENST00000552338 PRNTQ86SH4 94 aa7.01□□□□□ -1.29
LIMA1-211ENST00000552338 LINC01551Q86U37 167 aa7.01□□□□□ -1.29
LIMA1-211ENST00000552338 SLC7A5P1Q8MH63 180 aa7.01□□□□□ -1.29
LIMA1-211ENST00000552338 OR4B1Q8NGF8 309 aa7.01□□□□□ -1.29
LIMA1-211ENST00000552338 ASCL2Q99929 193 aa7.01□□□□□ -1.29
LIMA1-211ENST00000552338 C1QTNF4Q9BXJ3 329 aa7.01□□□□□ -1.29
LIMA1-211ENST00000552338 AURKAIP1Q9NWT8 199 aaPredicted RBP7.01□□□□□ -1.29
LIMA1-211ENST00000552338 RPH3ALQ9UNE2 315 aa7.01□□□□□ -1.29
LIMA1-211ENST00000552338 DNHD1Q96M86 4753 aa7.01□□□□□ -1.29
LIMA1-211ENST00000552338 MGAM2Q2M2H8 2515 aa7□□□□□ -1.29
LIMA1-211ENST00000552338 FABP5P3A8MUU1 101 aa7□□□□□ -1.29
LIMA1-211ENST00000552338 K7EIL1 84 aa7□□□□□ -1.29
LIMA1-211ENST00000552338 PFN1P07737 140 aaKnown RBP7□□□□□ -1.29
LIMA1-211ENST00000552338 CRIP1P50238 77 aa7□□□□□ -1.29
LIMA1-211ENST00000552338 RPL23P62829 140 aaKnown RBP7□□□□□ -1.29
LIMA1-211ENST00000552338 TDRG1Q3Y452 100 aa7□□□□□ -1.29
LIMA1-211ENST00000552338 LCE2AQ5TA79 106 aaPredicted RBP7□□□□□ -1.29
LIMA1-211ENST00000552338 SGK494Q96LW2 274 aa7□□□□□ -1.29
LIMA1-211ENST00000552338 NIPSNAP3BQ9BS92 247 aa7□□□□□ -1.29
LIMA1-211ENST00000552338 CSTL1Q9H114 145 aa7□□□□□ -1.29
LIMA1-211ENST00000552338 TP53TG3Q9ULZ0 132 aa7□□□□□ -1.29
LIMA1-211ENST00000552338 TRAV21A0A0B4J279 112 aa6.99□□□□□ -1.29
LIMA1-211ENST00000552338 C7orf71A4D174 169 aa6.99□□□□□ -1.29
LIMA1-211ENST00000552338 B4DEV8 164 aa6.99□□□□□ -1.29
LIMA1-211ENST00000552338 F8W036 122 aa6.99□□□□□ -1.29
LIMA1-211ENST00000552338 K7EN84 100 aa6.99□□□□□ -1.29
LIMA1-211ENST00000552338 CXCL1P09341 107 aa6.99□□□□□ -1.29
LIMA1-211ENST00000552338 ZNF80P51504 273 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-211ENST00000552338 APOC4P55056 127 aa6.99□□□□□ -1.29
LIMA1-211ENST00000552338 C4orf48Q5BLP8 95 aa6.99□□□□□ -1.29
LIMA1-211ENST00000552338 DNLZQ5SXM8 178 aa6.99□□□□□ -1.29
LIMA1-211ENST00000552338 ZNF705AQ6ZN79 300 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-211ENST00000552338 Q6ZWC4 215 aa6.99□□□□□ -1.29
LIMA1-211ENST00000552338 ZNF575Q86XF7 245 aa6.99□□□□□ -1.29
LIMA1-211ENST00000552338 TMEM256Q8N2U0 113 aa6.99□□□□□ -1.29
LIMA1-211ENST00000552338 Q8TAT8 98 aa6.99□□□□□ -1.29
LIMA1-211ENST00000552338 ZC2HC1AQ96GY0 325 aa6.99□□□□□ -1.29
LIMA1-211ENST00000552338 C8orf49Q96NF6 230 aa6.99□□□□□ -1.29
LIMA1-211ENST00000552338 NEU1Q99519 415 aa6.99□□□□□ -1.29
LIMA1-211ENST00000552338 GPX1P07203 203 aa6.98□□□□□ -1.29
LIMA1-211ENST00000552338 SPINK13Q1W4C9 94 aa6.98□□□□□ -1.29
LIMA1-211ENST00000552338 FAM162BQ5T6X4 162 aa6.98□□□□□ -1.29
LIMA1-211ENST00000552338 PRR9Q5T870 116 aa6.98□□□□□ -1.29
LIMA1-211ENST00000552338 GFI1BQ5VTD9 330 aa6.98□□□□□ -1.29
LIMA1-211ENST00000552338 ISOC2Q96AB3 205 aa6.98□□□□□ -1.29
LIMA1-211ENST00000552338 TUBA4BQ9H853 241 aa6.98□□□□□ -1.29
LIMA1-211ENST00000552338 OSTCQ9NRP0 149 aa6.98□□□□□ -1.29
LIMA1-211ENST00000552338 TP53TG1Q9Y2A0 90 aa6.98□□□□□ -1.29
LIMA1-211ENST00000552338 PGPEP1LA6NFU8 196 aa6.97□□□□□ -1.29
LIMA1-211ENST00000552338 M0R2Z0 102 aa6.97□□□□□ -1.29
LIMA1-211ENST00000552338 PRB4P10163 310 aaPredicted RBP6.97□□□□□ -1.29
LIMA1-211ENST00000552338 FOXA3P55318 350 aaPredicted RBP6.97□□□□□ -1.29
LIMA1-211ENST00000552338 KIR3DS1Q14943 382 aa6.97□□□□□ -1.29
LIMA1-211ENST00000552338 ANXA2RQ3ZCQ2 193 aa6.97□□□□□ -1.29
LIMA1-211ENST00000552338 CT83Q5H943 113 aa6.97□□□□□ -1.29
LIMA1-211ENST00000552338 C1orf158Q8N1D5 194 aa6.97□□□□□ -1.29
LIMA1-211ENST00000552338 PYGO2Q9BRQ0 406 aa6.97□□□□□ -1.29
LIMA1-211ENST00000552338 TMEM242Q9NWH2 141 aa6.97□□□□□ -1.29
LIMA1-211ENST00000552338 FAM231BA6NCW3 169 aa6.96□□□□□ -1.3
LIMA1-211ENST00000552338 SMIM9A6NGZ8 99 aa6.96□□□□□ -1.3
LIMA1-211ENST00000552338 H7BYZ3 331 aa6.96□□□□□ -1.3
LIMA1-211ENST00000552338 INSP01308 110 aa6.96□□□□□ -1.3
LIMA1-211ENST00000552338 IGKV3-20P01619 116 aa6.96□□□□□ -1.3
LIMA1-211ENST00000552338 FRMD6-AS1P0C7T7 363 aa6.96□□□□□ -1.3
LIMA1-211ENST00000552338 RBMY1A1P0DJD3 496 aaKnown RBP6.96□□□□□ -1.3
LIMA1-211ENST00000552338 RBMY1CP0DJD4 496 aa6.96□□□□□ -1.3
LIMA1-211ENST00000552338 CEBPGP53567 150 aa6.96□□□□□ -1.3
LIMA1-211ENST00000552338 BTN1A1Q13410 526 aa6.96□□□□□ -1.3
LIMA1-211ENST00000552338 RBMY1FQ15415 496 aaKnown RBP6.96□□□□□ -1.3
LIMA1-211ENST00000552338 NUDT10Q8NFP7 164 aa6.96□□□□□ -1.3
LIMA1-211ENST00000552338 RNF183Q96D59 192 aa6.96□□□□□ -1.3
LIMA1-211ENST00000552338 ANAPC16Q96DE5 110 aa6.96□□□□□ -1.3
LIMA1-211ENST00000552338 NUDT11Q96G61 164 aa6.96□□□□□ -1.3
LIMA1-211ENST00000552338 KCNS1Q96KK3 526 aa6.96□□□□□ -1.3
LIMA1-211ENST00000552338 TRAV12-2A0A075B6T6 113 aa6.95□□□□□ -1.3
LIMA1-211ENST00000552338 A0A087WWC5 75 aa6.95□□□□□ -1.3
LIMA1-211ENST00000552338 IGKV3D-20A0A0C4DH25 116 aa6.95□□□□□ -1.3
LIMA1-211ENST00000552338 J3QL48 77 aa6.95□□□□□ -1.3
LIMA1-211ENST00000552338 PPP1R2P9O14990 202 aa6.95□□□□□ -1.3
LIMA1-211ENST00000552338 SH2D1AO60880 128 aa6.95□□□□□ -1.3
LIMA1-211ENST00000552338 CA1P00915 261 aaPredicted RBP6.95□□□□□ -1.3
LIMA1-211ENST00000552338 RPL35AP18077 110 aaKnown RBP6.95□□□□□ -1.3
LIMA1-211ENST00000552338 RNASE4P34096 147 aaKnown RBP6.95□□□□□ -1.3
LIMA1-211ENST00000552338 OR5I1Q13606 314 aa6.95□□□□□ -1.3
LIMA1-211ENST00000552338 IBA57Q5T440 356 aaKnown RBP6.95□□□□□ -1.3
LIMA1-211ENST00000552338 SVBPQ8N300 66 aa6.95□□□□□ -1.3
LIMA1-211ENST00000552338 NHLRC2Q8NBF2 726 aa6.95□□□□□ -1.3
LIMA1-211ENST00000552338 SFRP2Q96HF1 295 aa6.95□□□□□ -1.3
LIMA1-211ENST00000552338 C11orf21Q9P2W6 132 aa6.95□□□□□ -1.3
LIMA1-211ENST00000552338 XCL2Q9UBD3 114 aa6.95□□□□□ -1.3
LIMA1-211ENST00000552338 NBEAL1Q6ZS30 2694 aa6.94□□□□□ -1.3
LIMA1-211ENST00000552338 NOTCH1P46531 2555 aa6.94□□□□□ -1.3
LIMA1-211ENST00000552338 IGHV1OR15-1A0A075B7D0 117 aa6.94□□□□□ -1.3
LIMA1-211ENST00000552338 TRAV12-3A0A0B4J271 114 aa6.94□□□□□ -1.3
LIMA1-211ENST00000552338 SNAPINO95295 136 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms