RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 MGST2Q99735 147 aa6.94□□□□□ -1.3
VPS29-208ENST00000550267 TXNDC17Q9BRA2 123 aa6.94□□□□□ -1.3
VPS29-208ENST00000550267 LECT2O14960 151 aa6.93□□□□□ -1.3
VPS29-208ENST00000550267 LINC01556Q5JQF7 62 aa6.93□□□□□ -1.3
VPS29-208ENST00000550267 ZFAND2AQ8N6M9 145 aa6.93□□□□□ -1.3
VPS29-208ENST00000550267 OR10G4Q8NGN3 311 aa6.93□□□□□ -1.3
VPS29-208ENST00000550267 RAB2BQ8WUD1 216 aa6.93□□□□□ -1.3
VPS29-208ENST00000550267 RABL2AQ9UBK7 228 aaPredicted RBP6.93□□□□□ -1.3
VPS29-208ENST00000550267 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.92□□□□□ -1.3
VPS29-208ENST00000550267 TRBV19A0A075B6N1 114 aa6.92□□□□□ -1.3
VPS29-208ENST00000550267 IGKV2-40A0A087WW87 121 aaPredicted RBP6.92□□□□□ -1.3
VPS29-208ENST00000550267 C9JCJ5 164 aa6.92□□□□□ -1.3
VPS29-208ENST00000550267 ZNF253O75346 499 aa6.92□□□□□ -1.3
VPS29-208ENST00000550267 IGKV2D-40P01614 121 aaPredicted RBP6.92□□□□□ -1.3
VPS29-208ENST00000550267 IGHV3-30P01768 117 aa6.92□□□□□ -1.3
VPS29-208ENST00000550267 IGHV3-33P01772 117 aa6.92□□□□□ -1.3
VPS29-208ENST00000550267 IGHV3-30-3P0DP02 117 aa6.92□□□□□ -1.3
VPS29-208ENST00000550267 IGHV3-30-5P0DP03 117 aa6.92□□□□□ -1.3
VPS29-208ENST00000550267 PPT1P50897 306 aa6.92□□□□□ -1.3
VPS29-208ENST00000550267 SPCS2Q15005 226 aa6.92□□□□□ -1.3
VPS29-208ENST00000550267 SOSTQ9BQB4 213 aa6.92□□□□□ -1.3
VPS29-208ENST00000550267 SLC25A31Q9H0C2 315 aa6.92□□□□□ -1.3
VPS29-208ENST00000550267 DNAJC4Q9NNZ3 241 aa6.92□□□□□ -1.3
VPS29-208ENST00000550267 RSL24D1Q9UHA3 163 aaKnown RBP6.92□□□□□ -1.3
VPS29-208ENST00000550267 NDUFB4O95168 129 aa6.91□□□□□ -1.3
VPS29-208ENST00000550267 SCGB1D2O95969 90 aa6.91□□□□□ -1.3
VPS29-208ENST00000550267 NMBP08949 121 aa6.91□□□□□ -1.3
VPS29-208ENST00000550267 FAUP35544 74 aaKnown RBP6.91□□□□□ -1.3
VPS29-208ENST00000550267 TIRAPP58753 221 aa6.91□□□□□ -1.3
VPS29-208ENST00000550267 MUC21Q5SSG8 566 aa6.91□□□□□ -1.3
VPS29-208ENST00000550267 C9orf47Q6ZRZ4 202 aa6.91□□□□□ -1.3
VPS29-208ENST00000550267 EXOC3-AS1Q8N2X6 119 aa6.91□□□□□ -1.3
VPS29-208ENST00000550267 NHLRC2Q8NBF2 726 aa6.91□□□□□ -1.3
VPS29-208ENST00000550267 MCFD2Q8NI22 146 aa6.91□□□□□ -1.3
VPS29-208ENST00000550267 SRRQ9GZT4 340 aa6.91□□□□□ -1.3
VPS29-208ENST00000550267 PRELID1Q9Y255 219 aa6.91□□□□□ -1.3
VPS29-208ENST00000550267 TRAV8-6A0A0B4J262 113 aa6.9□□□□□ -1.3
VPS29-208ENST00000550267 CAMLGP49069 296 aa6.9□□□□□ -1.3
VPS29-208ENST00000550267 RNF151Q2KHN1 245 aa6.9□□□□□ -1.3
VPS29-208ENST00000550267 OR10J3Q5JRS4 329 aa6.9□□□□□ -1.3
VPS29-208ENST00000550267 TMEM78Q5T7P6 136 aa6.9□□□□□ -1.3
VPS29-208ENST00000550267 MIC13Q5XKP0 118 aa6.9□□□□□ -1.3
VPS29-208ENST00000550267 Q6ZRG5 221 aa6.9□□□□□ -1.3
VPS29-208ENST00000550267 NRARPQ7Z6K4 114 aa6.9□□□□□ -1.3
VPS29-208ENST00000550267 OR1L4Q8NGR5 311 aa6.9□□□□□ -1.3
VPS29-208ENST00000550267 RASL10AQ92737 203 aa6.9□□□□□ -1.3
VPS29-208ENST00000550267 SLC25A21Q9BQT8 299 aaPredicted RBP6.9□□□□□ -1.3
VPS29-208ENST00000550267 ZNF492Q9P255 531 aa6.9□□□□□ -1.3
VPS29-208ENST00000550267 TIMM9Q9Y5J7 89 aa6.9□□□□□ -1.3
VPS29-208ENST00000550267 PKHD1L1Q86WI1 4243 aa6.89□□□□□ -1.31
VPS29-208ENST00000550267 TRAV4A0A0B4J268 109 aa6.89□□□□□ -1.31
VPS29-208ENST00000550267 IGHV3-16A0A0C4DH30 117 aa6.89□□□□□ -1.31
VPS29-208ENST00000550267 C9orf170A2RU37 121 aa6.89□□□□□ -1.31
VPS29-208ENST00000550267 TSC22D2O75157 780 aa6.89□□□□□ -1.31
VPS29-208ENST00000550267 PYYP10082 97 aa6.89□□□□□ -1.31
VPS29-208ENST00000550267 TNFSF8P32971 234 aa6.89□□□□□ -1.31
VPS29-208ENST00000550267 ZNF846Q147U1 533 aa6.89□□□□□ -1.31
VPS29-208ENST00000550267 KRTAP15-1Q3LI76 137 aa6.89□□□□□ -1.31
VPS29-208ENST00000550267 FAM122CQ6P4D5 195 aa6.89□□□□□ -1.31
VPS29-208ENST00000550267 SH2D6Q7Z4S9 175 aa6.89□□□□□ -1.31
VPS29-208ENST00000550267 OR4C5Q8NGB2 326 aa6.89□□□□□ -1.31
VPS29-208ENST00000550267 Q8TAT8 98 aa6.89□□□□□ -1.31
VPS29-208ENST00000550267 CIRBP-AS1Q8TBR5 109 aa6.89□□□□□ -1.31
VPS29-208ENST00000550267 TRIM63Q969Q1 353 aa6.89□□□□□ -1.31
VPS29-208ENST00000550267 SPXQ9BT56 116 aa6.89□□□□□ -1.31
VPS29-208ENST00000550267 CHAC1Q9BUX1 264 aa6.89□□□□□ -1.31
VPS29-208ENST00000550267 GGACTQ9BVM4 153 aa6.89□□□□□ -1.31
VPS29-208ENST00000550267 TM2D2Q9BX73 214 aa6.89□□□□□ -1.31
VPS29-208ENST00000550267 FABP12A6NFH5 140 aa6.88□□□□□ -1.31
VPS29-208ENST00000550267 SMIM18P0DKX4 95 aa6.88□□□□□ -1.31
VPS29-208ENST00000550267 HIST1H1EP10412 219 aaKnown RBP6.88□□□□□ -1.31
VPS29-208ENST00000550267 TAS2R30P59541 319 aa6.88□□□□□ -1.31
VPS29-208ENST00000550267 TMEM183BQ1AE95 376 aa6.88□□□□□ -1.31
VPS29-208ENST00000550267 TMEM183AQ8IXX5 376 aa6.88□□□□□ -1.31
VPS29-208ENST00000550267 TOMM5Q8N4H5 51 aa6.88□□□□□ -1.31
VPS29-208ENST00000550267 C12orf45Q8N5I9 185 aaPredicted RBP6.88□□□□□ -1.31
VPS29-208ENST00000550267 PFDN5Q99471 154 aa6.88□□□□□ -1.31
VPS29-208ENST00000550267 TMEM14CQ9P0S9 112 aa6.88□□□□□ -1.31
VPS29-208ENST00000550267 IGLV2-8P01709 118 aa6.87□□□□□ -1.31
VPS29-208ENST00000550267 HNRNPA3P51991 378 aaKnown RBP6.87□□□□□ -1.31
VPS29-208ENST00000550267 ZNF138P52744 262 aa6.87□□□□□ -1.31
VPS29-208ENST00000550267 AP3S2P59780 193 aa6.87□□□□□ -1.31
VPS29-208ENST00000550267 RAB31Q13636 194 aa6.87□□□□□ -1.31
VPS29-208ENST00000550267 PDE6HQ13956 83 aa6.87□□□□□ -1.31
VPS29-208ENST00000550267 LAGE3Q14657 143 aa6.87□□□□□ -1.31
VPS29-208ENST00000550267 IAH1Q2TAA2 248 aaPredicted RBP6.87□□□□□ -1.31
VPS29-208ENST00000550267 DYNC2LI1Q8TCX1 351 aa6.87□□□□□ -1.31
VPS29-208ENST00000550267 BAALCQ8WXS3 180 aa6.87□□□□□ -1.31
VPS29-208ENST00000550267 AAMDCQ9H7C9 122 aa6.87□□□□□ -1.31
VPS29-208ENST00000550267 SLC39A9Q9NUM3 307 aa6.87□□□□□ -1.31
VPS29-208ENST00000550267 C7orf66A4D0T2 115 aa6.86□□□□□ -1.31
VPS29-208ENST00000550267 RBFOX3A6NFN3 312 aa6.86□□□□□ -1.31
VPS29-208ENST00000550267 RS1O15537 224 aa6.86□□□□□ -1.31
VPS29-208ENST00000550267 GATA1P15976 413 aaPredicted RBP6.86□□□□□ -1.31
VPS29-208ENST00000550267 UBE2MP61081 183 aaKnown RBP6.86□□□□□ -1.31
VPS29-208ENST00000550267 ZNF266Q14584 549 aa6.86□□□□□ -1.31
VPS29-208ENST00000550267 TDRG1Q3Y452 100 aa6.86□□□□□ -1.31
VPS29-208ENST00000550267 LELP1Q5T871 98 aa6.86□□□□□ -1.31
VPS29-208ENST00000550267 GSKIPQ9P0R6 139 aa6.86□□□□□ -1.31
VPS29-208ENST00000550267 WDR83OSQ9Y284 106 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms