RNA–Protein interactions for RNA: ENST00000549328.1

CHMP1A-207, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 1,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-207ENST00000549328 MED28Q9H204 178 aa12.96□□□□□ -0.33
CHMP1A-207ENST00000549328 Q6ZQT7 251 aa12.95□□□□□ -0.34
CHMP1A-207ENST00000549328 ARPC5LQ9BPX5 153 aa12.95□□□□□ -0.34
CHMP1A-207ENST00000549328 TP53TG3Q9ULZ0 132 aa12.95□□□□□ -0.34
CHMP1A-207ENST00000549328 DNAH17Q9UFH2 4485 aa12.95□□□□□ -0.34
CHMP1A-207ENST00000549328 PGPA6NDG6 321 aa12.94□□□□□ -0.34
CHMP1A-207ENST00000549328 RAB2AP61019 212 aa12.94□□□□□ -0.34
CHMP1A-207ENST00000549328 Q6AWC8 147 aa12.94□□□□□ -0.34
CHMP1A-207ENST00000549328 OR10G4Q8NGN3 311 aa12.94□□□□□ -0.34
CHMP1A-207ENST00000549328 OR10G9Q8NGN4 311 aa12.94□□□□□ -0.34
CHMP1A-207ENST00000549328 OR10G7Q8NGN6 311 aa12.94□□□□□ -0.34
CHMP1A-207ENST00000549328 CMTM2Q8TAZ6 248 aa12.94□□□□□ -0.34
CHMP1A-207ENST00000549328 ASB13Q8WXK3 278 aa12.94□□□□□ -0.34
CHMP1A-207ENST00000549328 VSIG2Q96IQ7 327 aa12.94□□□□□ -0.34
CHMP1A-207ENST00000549328 AQP10Q96PS8 301 aa12.94□□□□□ -0.34
CHMP1A-207ENST00000549328 Q9H8V8 135 aa12.94□□□□□ -0.34
CHMP1A-207ENST00000549328 MUC4Q99102 2169 aa12.94□□□□□ -0.34
CHMP1A-207ENST00000549328 ZNF415Q09FC8 603 aa12.93□□□□□ -0.34
CHMP1A-207ENST00000549328 ESRGQ1W209 222 aa12.93□□□□□ -0.34
CHMP1A-207ENST00000549328 OR2G3Q8NGZ4 309 aa12.93□□□□□ -0.34
CHMP1A-207ENST00000549328 ST6GAL2Q96JF0 529 aa12.93□□□□□ -0.34
CHMP1A-207ENST00000549328 HYLS1Q96M11 299 aa12.93□□□□□ -0.34
CHMP1A-207ENST00000549328 UPK3BQ9BT76 320 aa12.93□□□□□ -0.34
CHMP1A-207ENST00000549328 EIF3GO75821 320 aaKnown RBP eCLIP12.92□□□□□ -0.34
CHMP1A-207ENST00000549328 C6orf223Q8N319 242 aa12.92□□□□□ -0.34
CHMP1A-207ENST00000549328 PSMG3Q9BT73 122 aaPredicted RBP12.92□□□□□ -0.34
CHMP1A-207ENST00000549328 SERF2P84101 59 aa12.91□□□□□ -0.34
CHMP1A-207ENST00000549328 SLAQ13239 276 aa12.91□□□□□ -0.34
CHMP1A-207ENST00000549328 MRPS16Q9Y3D3 137 aaKnown RBP12.91□□□□□ -0.34
CHMP1A-207ENST00000549328 A0A096LPF7 62 aa12.9□□□□□ -0.34
CHMP1A-207ENST00000549328 MBP02144 154 aa12.9□□□□□ -0.34
CHMP1A-207ENST00000549328 GIPP09681 153 aaPredicted RBP12.9□□□□□ -0.34
CHMP1A-207ENST00000549328 CDC34P49427 236 aaPredicted RBP12.9□□□□□ -0.34
CHMP1A-207ENST00000549328 TDRG1Q3Y452 100 aa12.9□□□□□ -0.34
CHMP1A-207ENST00000549328 TTC32Q5I0X7 151 aa12.9□□□□□ -0.34
CHMP1A-207ENST00000549328 MUC21Q5SSG8 566 aa12.9□□□□□ -0.34
CHMP1A-207ENST00000549328 FAM159AQ6UWV7 190 aa12.9□□□□□ -0.34
CHMP1A-207ENST00000549328 HSD17B11Q8NBQ5 300 aa12.9□□□□□ -0.34
CHMP1A-207ENST00000549328 SPXQ9BT56 116 aa12.9□□□□□ -0.34
CHMP1A-207ENST00000549328 MRPL16Q9NX20 251 aaKnown RBP12.9□□□□□ -0.34
CHMP1A-207ENST00000549328 HMGB3O15347 200 aaKnown RBP12.89□□□□□ -0.35
CHMP1A-207ENST00000549328 STAG3L2P0CL84 134 aa12.89□□□□□ -0.35
CHMP1A-207ENST00000549328 STAG3L3P0CL85 134 aa12.89□□□□□ -0.35
CHMP1A-207ENST00000549328 ARL14EPLP0DKL9 152 aa12.89□□□□□ -0.35
CHMP1A-207ENST00000549328 MED14OSP0DP75 135 aa12.89□□□□□ -0.35
CHMP1A-207ENST00000549328 ATP6V0CP27449 155 aa12.89□□□□□ -0.35
CHMP1A-207ENST00000549328 GOLT1AQ6ZVE7 132 aa12.89□□□□□ -0.35
CHMP1A-207ENST00000549328 MDFICQ9P1T7 246 aa12.89□□□□□ -0.35
CHMP1A-207ENST00000549328 PRO0255Q9UI72 69 aa12.89□□□□□ -0.35
CHMP1A-207ENST00000549328 PKHD1P08F94 4074 aa12.88□□□□□ -0.35
CHMP1A-207ENST00000549328 TRGV11A0A075B6L2 103 aa12.88□□□□□ -0.35
CHMP1A-207ENST00000549328 PAX4O43316 350 aa12.88□□□□□ -0.35
CHMP1A-207ENST00000549328 Q5BKY6 102 aa12.88□□□□□ -0.35
CHMP1A-207ENST00000549328 INO80EQ8NBZ0 244 aaPredicted RBP12.88□□□□□ -0.35
CHMP1A-207ENST00000549328 SUN5Q8TC36 379 aa12.88□□□□□ -0.35
CHMP1A-207ENST00000549328 RAB24Q969Q5 203 aa12.88□□□□□ -0.35
CHMP1A-207ENST00000549328 RPH3ALQ9UNE2 315 aa12.88□□□□□ -0.35
CHMP1A-207ENST00000549328 SERTM2A0A1B0GWG4 89 aa12.87□□□□□ -0.35
CHMP1A-207ENST00000549328 A0A1W2PPQ1 181 aa12.87□□□□□ -0.35
CHMP1A-207ENST00000549328 TMEM183BQ1AE95 376 aa12.87□□□□□ -0.35
CHMP1A-207ENST00000549328 TMEM183AQ8IXX5 376 aa12.87□□□□□ -0.35
CHMP1A-207ENST00000549328 RASL10AQ92737 203 aa12.87□□□□□ -0.35
CHMP1A-207ENST00000549328 TNFSF18Q9UNG2 199 aa12.87□□□□□ -0.35
CHMP1A-207ENST00000549328 HHLA3Q9XRX5 114 aa12.87□□□□□ -0.35
CHMP1A-207ENST00000549328 ICOSQ9Y6W8 199 aa12.87□□□□□ -0.35
CHMP1A-207ENST00000549328 PKD1P98161 4303 aa12.87□□□□□ -0.35
CHMP1A-207ENST00000549328 TRAV21A0A0B4J279 112 aa12.86□□□□□ -0.35
CHMP1A-207ENST00000549328 IGHV3-53P01767 116 aa12.86□□□□□ -0.35
CHMP1A-207ENST00000549328 BTF3P20290 206 aaKnown RBP12.86□□□□□ -0.35
CHMP1A-207ENST00000549328 TNP2Q05952 138 aa12.86□□□□□ -0.35
CHMP1A-207ENST00000549328 FHL2Q14192 279 aa12.86□□□□□ -0.35
CHMP1A-207ENST00000549328 IQCF2Q8IXL9 164 aa12.86□□□□□ -0.35
CHMP1A-207ENST00000549328 TREM1Q9NP99 234 aa12.86□□□□□ -0.35
CHMP1A-207ENST00000549328 HERC2O95714 4834 aa12.86□□□□□ -0.35
CHMP1A-207ENST00000549328 TRAV8-1A0A0A6YYK1 113 aa12.85□□□□□ -0.35
CHMP1A-207ENST00000549328 GCHFRP30047 84 aa12.85□□□□□ -0.35
CHMP1A-207ENST00000549328 CRYBA4P53673 196 aa12.85□□□□□ -0.35
CHMP1A-207ENST00000549328 C5orf17Q8NAS9 161 aa12.85□□□□□ -0.35
CHMP1A-207ENST00000549328 TVP23CQ96ET8 276 aa12.85□□□□□ -0.35
CHMP1A-207ENST00000549328 RNF222A6NCQ9 220 aa12.84□□□□□ -0.35
CHMP1A-207ENST00000549328 CXorf1O96002 111 aa12.84□□□□□ -0.35
CHMP1A-207ENST00000549328 GNG5P63218 68 aa12.84□□□□□ -0.35
CHMP1A-207ENST00000549328 MRPL23Q16540 153 aaKnown RBP12.84□□□□□ -0.35
CHMP1A-207ENST00000549328 KCNS1Q96KK3 526 aa12.84□□□□□ -0.35
CHMP1A-207ENST00000549328 KRTAP1-5Q9BYS1 174 aa12.84□□□□□ -0.35
CHMP1A-207ENST00000549328 ACTR3CQ9C0K3 210 aaPredicted RBP12.84□□□□□ -0.35
CHMP1A-207ENST00000549328 TMEM167BQ9NRX6 74 aa12.84□□□□□ -0.35
CHMP1A-207ENST00000549328 KIAA1109Q2LD37 5005 aa12.84□□□□□ -0.35
CHMP1A-207ENST00000549328 BORCS7-ASMTA0A0B4J1R7 106 aa12.83□□□□□ -0.36
CHMP1A-207ENST00000549328 K7EQM0 130 aa12.83□□□□□ -0.36
CHMP1A-207ENST00000549328 TCRAP04437 139 aa12.83□□□□□ -0.36
CHMP1A-207ENST00000549328 C8orf49Q96NF6 230 aa12.83□□□□□ -0.36
CHMP1A-207ENST00000549328 NDFIP1Q9BT67 221 aa12.83□□□□□ -0.36
CHMP1A-207ENST00000549328 SH3BGRL3Q9H299 93 aa12.83□□□□□ -0.36
CHMP1A-207ENST00000549328 NAGKQ9UJ70 344 aa12.83□□□□□ -0.36
CHMP1A-207ENST00000549328 FXYD6-FXYD2A0A087WZ82 144 aa12.82□□□□□ -0.36
CHMP1A-207ENST00000549328 TRGV4A0A0C4DH28 118 aa12.82□□□□□ -0.36
CHMP1A-207ENST00000549328 IGHV3-16A0A0C4DH30 117 aa12.82□□□□□ -0.36
CHMP1A-207ENST00000549328 GNRH2O43555 120 aa12.82□□□□□ -0.36
CHMP1A-207ENST00000549328 SUMO1P63165 101 aaKnown RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms