RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 DYNAPQ8N1N2 210 aa12.31□□□□□ -0.44
CUX1-211ENST00000546411 LINC01587Q99440 93 aa12.31□□□□□ -0.44
CUX1-211ENST00000546411 OVOL1O14753 267 aa12.31□□□□□ -0.44
CUX1-211ENST00000546411 OR11H6Q8NGC7 330 aa12.31□□□□□ -0.44
CUX1-211ENST00000546411 FN1P02751 2386 aaKnown RBP12.31□□□□□ -0.44
CUX1-211ENST00000546411 IGKCP01834 107 aa12.3□□□□□ -0.44
CUX1-211ENST00000546411 GTSF1Q8WW33 167 aa12.3□□□□□ -0.44
CUX1-211ENST00000546411 SPCS1Q9Y6A9 102 aa12.3□□□□□ -0.44
CUX1-211ENST00000546411 IGKV3D-20A0A0C4DH25 116 aa12.3□□□□□ -0.44
CUX1-211ENST00000546411 NPYP01303 97 aa12.3□□□□□ -0.44
CUX1-211ENST00000546411 EGR2P11161 476 aaPredicted RBP12.3□□□□□ -0.44
CUX1-211ENST00000546411 PIP4P2Q8N4L2 257 aa12.3□□□□□ -0.44
CUX1-211ENST00000546411 MSRB1Q9NZV6 116 aa12.3□□□□□ -0.44
CUX1-211ENST00000546411 FAM231BA6NCW3 169 aa12.29□□□□□ -0.44
CUX1-211ENST00000546411 TNFRSF18Q9Y5U5 241 aa12.29□□□□□ -0.44
CUX1-211ENST00000546411 LAGE3Q14657 143 aa12.29□□□□□ -0.44
CUX1-211ENST00000546411 TMEM95Q3KNT9 176 aa12.29□□□□□ -0.44
CUX1-211ENST00000546411 SIGLEC8Q9NYZ4 499 aa12.29□□□□□ -0.44
CUX1-211ENST00000546411 PKD1L2Q7Z442 2459 aa12.29□□□□□ -0.44
CUX1-211ENST00000546411 PAX1P15863 534 aa12.29□□□□□ -0.44
CUX1-211ENST00000546411 IGHV4-61A0A0C4DH41 118 aa12.29□□□□□ -0.44
CUX1-211ENST00000546411 TMEM238LA0A1B0GVL6 79 aa12.29□□□□□ -0.44
CUX1-211ENST00000546411 A6NJY4 79 aa12.29□□□□□ -0.44
CUX1-211ENST00000546411 CTSGP08311 255 aa12.29□□□□□ -0.44
CUX1-211ENST00000546411 LINC00322Q6ZN03 302 aaPredicted RBP12.29□□□□□ -0.44
CUX1-211ENST00000546411 YPEL4Q96NS1 127 aa12.29□□□□□ -0.44
CUX1-211ENST00000546411 ORAOV1Q8WV07 137 aa12.28□□□□□ -0.44
CUX1-211ENST00000546411 NPSP0C0P6 89 aa12.28□□□□□ -0.44
CUX1-211ENST00000546411 GATA1P15976 413 aaPredicted RBP12.28□□□□□ -0.44
CUX1-211ENST00000546411 TEX43Q6ZNM6 134 aa12.28□□□□□ -0.44
CUX1-211ENST00000546411 DEFB1P60022 68 aa12.28□□□□□ -0.44
CUX1-211ENST00000546411 BLCAPP62952 87 aa12.28□□□□□ -0.44
CUX1-211ENST00000546411 OR2K2Q8NGT1 345 aa12.28□□□□□ -0.44
CUX1-211ENST00000546411 DAZ1Q9NQZ3 744 aaKnown RBP12.28□□□□□ -0.44
CUX1-211ENST00000546411 MRPL16Q9NX20 251 aaKnown RBP12.28□□□□□ -0.44
CUX1-211ENST00000546411 RRN3P1Q2M238 152 aa12.27□□□□□ -0.44
CUX1-211ENST00000546411 GEMIN7Q9H840 131 aaKnown RBP12.27□□□□□ -0.44
CUX1-211ENST00000546411 AGPAT4-IT1Q9H0P7 198 aa12.27□□□□□ -0.45
CUX1-211ENST00000546411 MS4A6AQ9H2W1 248 aa12.27□□□□□ -0.45
CUX1-211ENST00000546411 CYSLTR1Q9Y271 337 aa12.27□□□□□ -0.45
CUX1-211ENST00000546411 NEGR1Q7Z3B1 354 aa12.27□□□□□ -0.45
CUX1-211ENST00000546411 CENPEQ02224 2701 aa12.27□□□□□ -0.45
CUX1-211ENST00000546411 IGLV11-55A0A075B6I3 123 aa12.26□□□□□ -0.45
CUX1-211ENST00000546411 FOXE3Q13461 319 aa12.26□□□□□ -0.45
CUX1-211ENST00000546411 BCL6BQ8N143 479 aaPredicted RBP12.26□□□□□ -0.45
CUX1-211ENST00000546411 LINC00477Q96M19 166 aa12.26□□□□□ -0.45
CUX1-211ENST00000546411 LYRM7Q5U5X0 104 aa12.26□□□□□ -0.45
CUX1-211ENST00000546411 TRAV12-2A0A075B6T6 113 aa12.26□□□□□ -0.45
CUX1-211ENST00000546411 TMEM8BA6NDV4 472 aa12.26□□□□□ -0.45
CUX1-211ENST00000546411 CHTOPQ9Y3Y2 248 aaKnown RBP12.26□□□□□ -0.45
CUX1-211ENST00000546411 CENPVL3A0A0U1RRI6 287 aa12.26□□□□□ -0.45
CUX1-211ENST00000546411 IGHV4-38-2P0DP08 117 aa12.26□□□□□ -0.45
CUX1-211ENST00000546411 USMG5Q96IX5 58 aa12.26□□□□□ -0.45
CUX1-211ENST00000546411 PRAC2D3DTV9 90 aa12.25□□□□□ -0.45
CUX1-211ENST00000546411 PPP1R17O96001 155 aa12.25□□□□□ -0.45
CUX1-211ENST00000546411 IGLV2-8P01709 118 aa12.25□□□□□ -0.45
CUX1-211ENST00000546411 SPINK13Q1W4C9 94 aa12.25□□□□□ -0.45
CUX1-211ENST00000546411 Q8N9W7 124 aa12.25□□□□□ -0.45
CUX1-211ENST00000546411 CSTL1Q9H114 145 aa12.25□□□□□ -0.45
CUX1-211ENST00000546411 COL5A1P20908 1838 aaPredicted RBP12.25□□□□□ -0.45
CUX1-211ENST00000546411 FAM223BA6NKX1 122 aa12.25□□□□□ -0.45
CUX1-211ENST00000546411 CIDEAO60543 219 aa12.25□□□□□ -0.45
CUX1-211ENST00000546411 PRB1P04280 392 aa12.25□□□□□ -0.45
CUX1-211ENST00000546411 ORMDL2Q53FV1 153 aa12.25□□□□□ -0.45
CUX1-211ENST00000546411 FAM223AQ8IWN6 122 aa12.25□□□□□ -0.45
CUX1-211ENST00000546411 ZNF418Q8TF45 676 aaPredicted RBP12.25□□□□□ -0.45
CUX1-211ENST00000546411 LINC00574Q9H8X3 128 aa12.25□□□□□ -0.45
CUX1-211ENST00000546411 YAE1D1Q9NRH1 226 aa12.25□□□□□ -0.45
CUX1-211ENST00000546411 ZNF462Q96JM2 2506 aa12.25□□□□□ -0.45
CUX1-211ENST00000546411 KNCNA6PVL3 124 aa12.24□□□□□ -0.45
CUX1-211ENST00000546411 ZNF815PA8K554 130 aa12.24□□□□□ -0.45
CUX1-211ENST00000546411 DTX2Q86UW9 622 aa12.24□□□□□ -0.45
CUX1-211ENST00000546411 FANCD2OSQ96PS1 177 aa12.24□□□□□ -0.45
CUX1-211ENST00000546411 DPH3P1Q9H4G8 78 aa12.24□□□□□ -0.45
CUX1-211ENST00000546411 A0A0U1RRA0 63 aa12.24□□□□□ -0.45
CUX1-211ENST00000546411 LINC01548A6NM66 108 aa12.24□□□□□ -0.45
CUX1-211ENST00000546411 IGHV4-39P01824 125 aa12.23□□□□□ -0.45
CUX1-211ENST00000546411 SUMO2P61956 95 aaKnown RBP12.23□□□□□ -0.45
CUX1-211ENST00000546411 FASNP49327 2511 aaKnown RBP12.23□□□□□ -0.45
CUX1-211ENST00000546411 C1orf159Q96HA4 380 aa12.23□□□□□ -0.45
CUX1-211ENST00000546411 KLK9Q9UKQ9 250 aa12.23□□□□□ -0.45
CUX1-211ENST00000546411 CRXO43186 299 aaPredicted RBP12.23□□□□□ -0.45
CUX1-211ENST00000546411 ANXA2RQ3ZCQ2 193 aa12.23□□□□□ -0.45
CUX1-211ENST00000546411 IGHV4-30-2A0A087WSY4 118 aa12.22□□□□□ -0.45
CUX1-211ENST00000546411 CRYGCP07315 174 aa12.22□□□□□ -0.45
CUX1-211ENST00000546411 CDSNQ15517 529 aa12.22□□□□□ -0.45
CUX1-211ENST00000546411 ZNF876PQ49A33 203 aa12.22□□□□□ -0.45
CUX1-211ENST00000546411 MEGF9Q9H1U4 602 aa12.22□□□□□ -0.45
CUX1-211ENST00000546411 VCX2Q9H322 139 aa12.22□□□□□ -0.45
CUX1-211ENST00000546411 FRYLO94915 3013 aa12.22□□□□□ -0.45
CUX1-211ENST00000546411 KIR2DL5BA0A0G2JN68 375 aa12.22□□□□□ -0.45
CUX1-211ENST00000546411 KIR2DL5BA0A0G2JPC4 375 aa12.22□□□□□ -0.45
CUX1-211ENST00000546411 KIR2DL5AQ8N109 375 aa12.22□□□□□ -0.45
CUX1-211ENST00000546411 C1orf122Q6ZSJ8 110 aa12.22□□□□□ -0.45
CUX1-211ENST00000546411 CFHR4Q92496 578 aa12.22□□□□□ -0.45
CUX1-211ENST00000546411 MAP1AP78559 2803 aaPredicted RBP12.21□□□□□ -0.45
CUX1-211ENST00000546411 H7C1H1 209 aa12.21□□□□□ -0.45
CUX1-211ENST00000546411 IGHV4-59P01825 116 aa12.21□□□□□ -0.45
CUX1-211ENST00000546411 HSD52Q0P140 79 aa12.21□□□□□ -0.45
CUX1-211ENST00000546411 NPBQ8NG41 125 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 158.3 ms