RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	GOLT1A	Q6ZVE7	132 aa		11.7	□□□□□ -0.54
CHFR-223	ENST00000544268	GPR82	Q96P67	336 aa		11.7	□□□□□ -0.54
CHFR-223	ENST00000544268	ZNF785	A8K8V0	405 aa		11.69	□□□□□ -0.54
CHFR-223	ENST00000544268	APOH	P02749	345 aa	Predicted RBP	11.69	□□□□□ -0.54
CHFR-223	ENST00000544268	CSN3	P07498	182 aa		11.69	□□□□□ -0.54
CHFR-223	ENST00000544268	RPL32	P62910	135 aa	Known RBP	11.69	□□□□□ -0.54
CHFR-223	ENST00000544268	NDP	Q00604	133 aa		11.69	□□□□□ -0.54
CHFR-223	ENST00000544268	RASL11B	Q9BPW5	248 aa		11.69	□□□□□ -0.54
CHFR-223	ENST00000544268	SPANXB1	Q9NS25	103 aa	Predicted RBP	11.69	□□□□□ -0.54
CHFR-223	ENST00000544268	KLF12	Q9Y4X4	402 aa		11.69	□□□□□ -0.54
CHFR-223	ENST00000544268		F8W1H4	67 aa		11.69	□□□□□ -0.54
CHFR-223	ENST00000544268		P01737	135 aa		11.69	□□□□□ -0.54
CHFR-223	ENST00000544268	LGALS9B	Q3B8N2	356 aa		11.69	□□□□□ -0.54
CHFR-223	ENST00000544268	LGALS9C	Q6DKI2	356 aa		11.69	□□□□□ -0.54
CHFR-223	ENST00000544268	PRNT	Q86SH4	94 aa		11.69	□□□□□ -0.54
CHFR-223	ENST00000544268	CFHR4	Q92496	578 aa		11.69	□□□□□ -0.54
CHFR-223	ENST00000544268	ZNF492	Q9P255	531 aa		11.69	□□□□□ -0.54
CHFR-223	ENST00000544268	C19orf71	A6NCJ1	209 aa		11.68	□□□□□ -0.54
CHFR-223	ENST00000544268	HAX1	O00165	279 aa		11.68	□□□□□ -0.54
CHFR-223	ENST00000544268	LTA	P01374	205 aa		11.68	□□□□□ -0.54
CHFR-223	ENST00000544268	IGLV2-11	P01706	119 aa		11.68	□□□□□ -0.54
CHFR-223	ENST00000544268	HIST2H2BC	Q6DN03	193 aa		11.68	□□□□□ -0.54
CHFR-223	ENST00000544268	PIP4P2	Q8N4L2	257 aa		11.68	□□□□□ -0.54
CHFR-223	ENST00000544268		M0R3E3	92 aa		11.68	□□□□□ -0.54
CHFR-223	ENST00000544268	FCGR2B	P31994	310 aa	Predicted RBP	11.68	□□□□□ -0.54
CHFR-223	ENST00000544268	SMIM20	Q8N5G0	67 aa		11.68	□□□□□ -0.54
CHFR-223	ENST00000544268	SIGLEC8	Q9NYZ4	499 aa		11.68	□□□□□ -0.54
CHFR-223	ENST00000544268	GCN1	Q92616	2671 aa	Known RBP	11.68	□□□□□ -0.54
CHFR-223	ENST00000544268	IGHV3-35	A0A0C4DH35	117 aa		11.67	□□□□□ -0.54
CHFR-223	ENST00000544268	FBLL1	A6NHQ2	334 aa	Known RBP	11.67	□□□□□ -0.54
CHFR-223	ENST00000544268	DSCR9	P59020	149 aa		11.67	□□□□□ -0.54
CHFR-223	ENST00000544268	IL4	P05112	153 aa		11.67	□□□□□ -0.54
CHFR-223	ENST00000544268	MRPL16	Q9NX20	251 aa	Known RBP	11.67	□□□□□ -0.54
CHFR-223	ENST00000544268		A4D1N5	150 aa		11.66	□□□□□ -0.54
CHFR-223	ENST00000544268	NBR2	O15453	112 aa		11.66	□□□□□ -0.54
CHFR-223	ENST00000544268	RNF183	Q96D59	192 aa		11.66	□□□□□ -0.54
CHFR-223	ENST00000544268	DAZAP1	Q96EP5	407 aa	Known RBP	11.66	□□□□□ -0.54
CHFR-223	ENST00000544268	PSMG3-AS1	Q96PY0	264 aa		11.66	□□□□□ -0.54
CHFR-223	ENST00000544268	NCBP2L	A6PVI3	153 aa	Known RBP	11.66	□□□□□ -0.54
CHFR-223	ENST00000544268	UBE2E1	P51965	193 aa		11.66	□□□□□ -0.54
CHFR-223	ENST00000544268	PAX8	Q06710	450 aa		11.66	□□□□□ -0.54
CHFR-223	ENST00000544268		Q86TA4	180 aa		11.66	□□□□□ -0.54
CHFR-223	ENST00000544268	PRSS3P2	Q8NHM4	247 aa		11.66	□□□□□ -0.54
CHFR-223	ENST00000544268	SPAG8	Q99932	426 aa	Predicted RBP	11.66	□□□□□ -0.54
CHFR-223	ENST00000544268	WFDC2	Q14508	124 aa		11.65	□□□□□ -0.54
CHFR-223	ENST00000544268	ZNF491	Q8N8L2	437 aa		11.65	□□□□□ -0.54
CHFR-223	ENST00000544268	OR8A1	Q8NGG7	326 aa		11.65	□□□□□ -0.54
CHFR-223	ENST00000544268	MINOS1	Q5TGZ0	78 aa		11.65	□□□□□ -0.55
CHFR-223	ENST00000544268	IGFL4	Q6B9Z1	124 aa		11.65	□□□□□ -0.55
CHFR-223	ENST00000544268	FANCD2OS	Q96PS1	177 aa		11.65	□□□□□ -0.55
CHFR-223	ENST00000544268	UFC1	Q9Y3C8	167 aa		11.65	□□□□□ -0.55
CHFR-223	ENST00000544268	MINOS1-NBL1	R4GNA1	71 aa		11.65	□□□□□ -0.55
CHFR-223	ENST00000544268	GAGE5	Q13069	117 aa		11.64	□□□□□ -0.55
CHFR-223	ENST00000544268	GAGE6	Q13070	117 aa		11.64	□□□□□ -0.55
CHFR-223	ENST00000544268	PCP2	Q8IVA1	136 aa		11.64	□□□□□ -0.55
CHFR-223	ENST00000544268	FMC1	Q96HJ9	113 aa		11.64	□□□□□ -0.55
CHFR-223	ENST00000544268	AJUBA	Q96IF1	538 aa		11.64	□□□□□ -0.55
CHFR-223	ENST00000544268	ERG28	Q9UKR5	140 aa		11.64	□□□□□ -0.55
CHFR-223	ENST00000544268	NPIPB6	E9PJ23	425 aa		11.64	□□□□□ -0.55
CHFR-223	ENST00000544268		F8W735	103 aa	Predicted RBP	11.64	□□□□□ -0.55
CHFR-223	ENST00000544268	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	11.64	□□□□□ -0.55
CHFR-223	ENST00000544268	SLC25A16	P16260	332 aa		11.64	□□□□□ -0.55
CHFR-223	ENST00000544268	ZAN	Q9Y493	2812 aa		11.63	□□□□□ -0.55
CHFR-223	ENST00000544268	CENPVL3	A0A0U1RRI6	287 aa		11.63	□□□□□ -0.55
CHFR-223	ENST00000544268	MSMB	P08118	114 aa		11.63	□□□□□ -0.55
CHFR-223	ENST00000544268	SAA4	P35542	130 aa		11.63	□□□□□ -0.55
CHFR-223	ENST00000544268	DEFB113	Q30KQ7	82 aa		11.63	□□□□□ -0.55
CHFR-223	ENST00000544268	ZNF562	Q6V9R5	426 aa		11.63	□□□□□ -0.55
CHFR-223	ENST00000544268	RNF125	Q96EQ8	232 aa		11.63	□□□□□ -0.55
CHFR-223	ENST00000544268	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	11.63	□□□□□ -0.55	1e-6	■■■■□ 20.3
CHFR-223	ENST00000544268	TRBV19	A0A075B6N1	114 aa		11.62	□□□□□ -0.55
CHFR-223	ENST00000544268		A0A096LNJ9	63 aa		11.62	□□□□□ -0.55
CHFR-223	ENST00000544268	SIGLEC15	Q6ZMC9	328 aa		11.62	□□□□□ -0.55
CHFR-223	ENST00000544268	ZNF418	Q8TF45	676 aa	Predicted RBP	11.62	□□□□□ -0.55
CHFR-223	ENST00000544268	PHLDA1	Q8WV24	401 aa	Predicted RBP	11.62	□□□□□ -0.55
CHFR-223	ENST00000544268	C8orf49	Q96NF6	230 aa		11.62	□□□□□ -0.55
CHFR-223	ENST00000544268	SHANK2-AS3	Q9BTD1	123 aa		11.62	□□□□□ -0.55
CHFR-223	ENST00000544268	OTOR	Q9NRC9	128 aa		11.62	□□□□□ -0.55
CHFR-223	ENST00000544268	HIGD1B	Q9P298	99 aa		11.62	□□□□□ -0.55
CHFR-223	ENST00000544268	IGHV3OR16-10	A0A075B7F0	116 aa		11.62	□□□□□ -0.55
CHFR-223	ENST00000544268		A0A096LNT2	108 aa		11.62	□□□□□ -0.55
CHFR-223	ENST00000544268	CT45A10	P0DMU9	189 aa		11.62	□□□□□ -0.55
CHFR-223	ENST00000544268	GCSH	P23434	173 aa		11.62	□□□□□ -0.55
CHFR-223	ENST00000544268	NMU	P48645	174 aa		11.62	□□□□□ -0.55
CHFR-223	ENST00000544268	CRIP1	P50238	77 aa		11.62	□□□□□ -0.55
CHFR-223	ENST00000544268	FXYD2	P54710	66 aa		11.62	□□□□□ -0.55
CHFR-223	ENST00000544268	CACNG7	P62955	275 aa		11.62	□□□□□ -0.55
CHFR-223	ENST00000544268	GATD1	Q8NB37	220 aa		11.62	□□□□□ -0.55
CHFR-223	ENST00000544268	RAX2	Q96IS3	184 aa		11.62	□□□□□ -0.55
CHFR-223	ENST00000544268	C18orf15	Q96N68	181 aa		11.62	□□□□□ -0.55
CHFR-223	ENST00000544268	RNF5	Q99942	180 aa		11.62	□□□□□ -0.55
CHFR-223	ENST00000544268	BEX4	Q9NWD9	120 aa	Predicted RBP	11.62	□□□□□ -0.55
CHFR-223	ENST00000544268	OOSP1	A8MZH6	123 aa		11.61	□□□□□ -0.55
CHFR-223	ENST00000544268		E9PLD3	99 aa		11.61	□□□□□ -0.55
CHFR-223	ENST00000544268		H3BRN7	92 aa		11.61	□□□□□ -0.55
CHFR-223	ENST00000544268	TCTA	P57738	103 aa		11.61	□□□□□ -0.55
CHFR-223	ENST00000544268	TPPP3	Q9BW30	176 aa		11.61	□□□□□ -0.55
CHFR-223	ENST00000544268		A0A1B0GUT8	65 aa		11.61	□□□□□ -0.55
CHFR-223	ENST00000544268	NPFF	O15130	113 aa		11.61	□□□□□ -0.55
CHFR-223	ENST00000544268	MRPS12	O15235	138 aa	Known RBP	11.61	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 31 ms