RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 LINC00467Q9BRT7 94 aa12.73□□□□□ -0.37
CLSTN3-210ENST00000540931 TRAV21A0A0B4J279 112 aa12.72□□□□□ -0.37
CLSTN3-210ENST00000540931 TMEM250H0YL14 139 aa12.72□□□□□ -0.37
CLSTN3-210ENST00000540931 GFI1BQ5VTD9 330 aa12.72□□□□□ -0.37
CLSTN3-210ENST00000540931 Q6AWC8 147 aa12.72□□□□□ -0.37
CLSTN3-210ENST00000540931 ZFAND2AQ8N6M9 145 aa12.72□□□□□ -0.37
CLSTN3-210ENST00000540931 EIF5A2Q9GZV4 153 aaKnown RBP12.72□□□□□ -0.37
CLSTN3-210ENST00000540931 TRAV12-2A0A075B6T6 113 aa12.71□□□□□ -0.37
CLSTN3-210ENST00000540931 LOC102723971A0A1B0GUV8 181 aa12.71□□□□□ -0.37
CLSTN3-210ENST00000540931 RNASE4P34096 147 aaKnown RBP12.71□□□□□ -0.37
CLSTN3-210ENST00000540931 ZNF506Q5JVG8 444 aa12.71□□□□□ -0.37
CLSTN3-210ENST00000540931 COX8CQ7Z4L0 72 aa12.71□□□□□ -0.37
CLSTN3-210ENST00000540931 PRNTQ86SH4 94 aa12.71□□□□□ -0.37
CLSTN3-210ENST00000540931 C1orf158Q8N1D5 194 aa12.71□□□□□ -0.37
CLSTN3-210ENST00000540931 C2CD4CQ8TF44 421 aa12.71□□□□□ -0.37
CLSTN3-210ENST00000540931 FAM210AQ96ND0 272 aa12.71□□□□□ -0.37
CLSTN3-210ENST00000540931 BIN3Q9NQY0 253 aa12.71□□□□□ -0.37
CLSTN3-210ENST00000540931 IGHV3OR16-12A0A075B7B8 117 aa12.7□□□□□ -0.38
CLSTN3-210ENST00000540931 TRAV8-1A0A0A6YYK1 113 aa12.7□□□□□ -0.38
CLSTN3-210ENST00000540931 IGLV2-11P01706 119 aa12.7□□□□□ -0.38
CLSTN3-210ENST00000540931 Q8TAT8 98 aa12.7□□□□□ -0.38
CLSTN3-210ENST00000540931 C16orf74Q96GX8 76 aa12.7□□□□□ -0.38
CLSTN3-210ENST00000540931 KCNS1Q96KK3 526 aa12.7□□□□□ -0.38
CLSTN3-210ENST00000540931 TRAV12-3A0A0B4J271 114 aa12.69□□□□□ -0.38
CLSTN3-210ENST00000540931 RGS13O14921 159 aa12.69□□□□□ -0.38
CLSTN3-210ENST00000540931 ZNF324O75467 553 aaPredicted RBP12.69□□□□□ -0.38
CLSTN3-210ENST00000540931 LTAP01374 205 aa12.69□□□□□ -0.38
CLSTN3-210ENST00000540931 FAM159AQ6UWV7 190 aa12.69□□□□□ -0.38
CLSTN3-210ENST00000540931 Q86TA4 180 aa12.69□□□□□ -0.38
CLSTN3-210ENST00000540931 MED9Q9NWA0 146 aa12.69□□□□□ -0.38
CLSTN3-210ENST00000540931 X6R8D5 127 aa12.69□□□□□ -0.38
CLSTN3-210ENST00000540931 SCO2A0A1W2PP80 73 aa12.68□□□□□ -0.38
CLSTN3-210ENST00000540931 PFN1P07737 140 aaKnown RBP12.68□□□□□ -0.38
CLSTN3-210ENST00000540931 PEA15Q15121 130 aa12.68□□□□□ -0.38
CLSTN3-210ENST00000540931 ANXA2RQ3ZCQ2 193 aa12.68□□□□□ -0.38
CLSTN3-210ENST00000540931 TMEM183AQ8IXX5 376 aa12.68□□□□□ -0.38
CLSTN3-210ENST00000540931 EIF4E3Q8N5X7 224 aaKnown RBP12.68□□□□□ -0.38
CLSTN3-210ENST00000540931 TMEM263Q8WUH6 116 aaKnown RBP12.68□□□□□ -0.38
CLSTN3-210ENST00000540931 WWC2-AS2Q96NR7 200 aa12.68□□□□□ -0.38
CLSTN3-210ENST00000540931 RETNQ9HD89 108 aa12.68□□□□□ -0.38
CLSTN3-210ENST00000540931 FABP5P3A8MUU1 101 aa12.67□□□□□ -0.38
CLSTN3-210ENST00000540931 J3KRW8 73 aa12.67□□□□□ -0.38
CLSTN3-210ENST00000540931 BAGE2Q86Y30 109 aa12.67□□□□□ -0.38
CLSTN3-210ENST00000540931 IGHV1OR15-1A0A075B7D0 117 aa12.66□□□□□ -0.38
CLSTN3-210ENST00000540931 TRAV34A0A0B4J273 112 aa12.66□□□□□ -0.38
CLSTN3-210ENST00000540931 GCGP01275 180 aa12.66□□□□□ -0.38
CLSTN3-210ENST00000540931 RPL35P42766 123 aaKnown RBP12.66□□□□□ -0.38
CLSTN3-210ENST00000540931 BTN1A1Q13410 526 aa12.66□□□□□ -0.38
CLSTN3-210ENST00000540931 TDRG1Q3Y452 100 aa12.66□□□□□ -0.38
CLSTN3-210ENST00000540931 CLLU1Q5K131 121 aa12.66□□□□□ -0.38
CLSTN3-210ENST00000540931 Q8NAQ8 132 aa12.66□□□□□ -0.38
CLSTN3-210ENST00000540931 LINC00479Q96M42 142 aa12.66□□□□□ -0.38
CLSTN3-210ENST00000540931 TRGV11A0A075B6L2 103 aa12.65□□□□□ -0.38
CLSTN3-210ENST00000540931 IGHV4-28A0A0C4DH34 117 aa12.65□□□□□ -0.38
CLSTN3-210ENST00000540931 TOR2AQ5JU69 321 aa12.65□□□□□ -0.38
CLSTN3-210ENST00000540931 IBA57Q5T440 356 aaKnown RBP12.65□□□□□ -0.38
CLSTN3-210ENST00000540931 SGK494Q96LW2 274 aa12.65□□□□□ -0.38
CLSTN3-210ENST00000540931 CBY3A6NI87 242 aa12.64□□□□□ -0.39
CLSTN3-210ENST00000540931 LYRM9A8MSI8 78 aa12.64□□□□□ -0.39
CLSTN3-210ENST00000540931 SNURFLB1AK76 121 aa12.64□□□□□ -0.39
CLSTN3-210ENST00000540931 SPART-AS1P0CW21 52 aa12.64□□□□□ -0.39
CLSTN3-210ENST00000540931 PRB4P10163 310 aaPredicted RBP12.64□□□□□ -0.39
CLSTN3-210ENST00000540931 GNG4P50150 75 aa12.64□□□□□ -0.39
CLSTN3-210ENST00000540931 FAM74A3Q4VXF1 159 aa12.64□□□□□ -0.39
CLSTN3-210ENST00000540931 FAM162BQ5T6X4 162 aa12.64□□□□□ -0.39
CLSTN3-210ENST00000540931 TVP23CQ96ET8 276 aa12.64□□□□□ -0.39
CLSTN3-210ENST00000540931 TIMM8BQ9Y5J9 83 aaPredicted RBP12.64□□□□□ -0.39
CLSTN3-210ENST00000540931 A0A0J9YWU9 116 aa12.63□□□□□ -0.39
CLSTN3-210ENST00000540931 RAB19A4D1S5 217 aa12.63□□□□□ -0.39
CLSTN3-210ENST00000540931 C9JCJ5 164 aa12.63□□□□□ -0.39
CLSTN3-210ENST00000540931 HTN1P15515 57 aa12.63□□□□□ -0.39
CLSTN3-210ENST00000540931 EDA2RQ9HAV5 297 aa12.63□□□□□ -0.39
CLSTN3-210ENST00000540931 SDF2L1Q9HCN8 221 aa12.63□□□□□ -0.39
CLSTN3-210ENST00000540931 TP53TG3Q9ULZ0 132 aa12.63□□□□□ -0.39
CLSTN3-210ENST00000540931 CXorf65A6NEN9 183 aa12.62□□□□□ -0.39
CLSTN3-210ENST00000540931 RBMY1A1P0DJD3 496 aaKnown RBP12.62□□□□□ -0.39
CLSTN3-210ENST00000540931 RBMY1CP0DJD4 496 aa12.62□□□□□ -0.39
CLSTN3-210ENST00000540931 KIR3DS1Q14943 382 aa12.62□□□□□ -0.39
CLSTN3-210ENST00000540931 RBMY1FQ15415 496 aaKnown RBP12.62□□□□□ -0.39
CLSTN3-210ENST00000540931 C8orf49Q96NF6 230 aa12.62□□□□□ -0.39
CLSTN3-210ENST00000540931 MLST8Q9BVC4 326 aa12.62□□□□□ -0.39
CLSTN3-210ENST00000540931 LY96Q9Y6Y9 160 aa12.62□□□□□ -0.39
CLSTN3-210ENST00000540931 ZNF705GA8MUZ8 300 aaPredicted RBP12.61□□□□□ -0.39
CLSTN3-210ENST00000540931 ZNF415Q09FC8 603 aa12.61□□□□□ -0.39
CLSTN3-210ENST00000540931 ZNF674Q2M3X9 581 aa12.61□□□□□ -0.39
CLSTN3-210ENST00000540931 PRR9Q5T870 116 aa12.61□□□□□ -0.39
CLSTN3-210ENST00000540931 C11orf45Q8TAV5 145 aa12.61□□□□□ -0.39
CLSTN3-210ENST00000540931 RNASE8Q8TDE3 154 aaKnown RBP12.61□□□□□ -0.39
CLSTN3-210ENST00000540931 DAZAP1Q96EP5 407 aaKnown RBP12.61□□□□□ -0.39
CLSTN3-210ENST00000540931 SPXQ9BT56 116 aa12.61□□□□□ -0.39
CLSTN3-210ENST00000540931 IFITM2Q01629 132 aa12.6□□□□□ -0.39
CLSTN3-210ENST00000540931 DAZ2Q13117 558 aaKnown RBP12.6□□□□□ -0.39
CLSTN3-210ENST00000540931 CENPWQ5EE01 88 aa12.6□□□□□ -0.39
CLSTN3-210ENST00000540931 LGALS9BQ3B8N2 356 aa12.59□□□□□ -0.39
CLSTN3-210ENST00000540931 ZC2HC1AQ96GY0 325 aa12.59□□□□□ -0.39
CLSTN3-210ENST00000540931 NDUFAF3Q9BU61 184 aa12.59□□□□□ -0.39
CLSTN3-210ENST00000540931 PARLQ9H300 379 aa12.59□□□□□ -0.39
CLSTN3-210ENST00000540931 XKRY2A2RUG3 117 aa12.58□□□□□ -0.4
CLSTN3-210ENST00000540931 SRP19P09132 144 aaKnown RBP12.58□□□□□ -0.4
CLSTN3-210ENST00000540931 TCL1AP56279 114 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 94 ms