RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 FAM19A2Q8N3H0 131 aa11.15□□□□□ -0.62
COLCA1-204ENST00000540738 SMIM13P0DJ93 91 aa11.15□□□□□ -0.62
COLCA1-204ENST00000540738 TMEM243Q9BU79 118 aa11.15□□□□□ -0.62
COLCA1-204ENST00000540738 Q6YL49 198 aa11.15□□□□□ -0.63
COLCA1-204ENST00000540738 GPHB5Q86YW7 130 aa11.15□□□□□ -0.63
COLCA1-204ENST00000540738 NUP35Q8NFH5 326 aa11.15□□□□□ -0.63
COLCA1-204ENST00000540738 TRAV13-1A0A0B4J241 112 aa11.14□□□□□ -0.63
COLCA1-204ENST00000540738 CT83Q5H943 113 aa11.14□□□□□ -0.63
COLCA1-204ENST00000540738 JPT2Q9H910 190 aa11.14□□□□□ -0.63
COLCA1-204ENST00000540738 SERF1AO75920 110 aa11.14□□□□□ -0.63
COLCA1-204ENST00000540738 IGF2BP2-AS1Q96M15 143 aa11.14□□□□□ -0.63
COLCA1-204ENST00000540738 M0R2P5 195 aa11.14□□□□□ -0.63
COLCA1-204ENST00000540738 LY6G5BQ8NDX9 201 aa11.14□□□□□ -0.63
COLCA1-204ENST00000540738 PKIGQ9Y2B9 76 aa11.14□□□□□ -0.63
COLCA1-204ENST00000540738 IGHV3-16A0A0C4DH30 117 aa11.14□□□□□ -0.63
COLCA1-204ENST00000540738 IGKCP01834 107 aa11.14□□□□□ -0.63
COLCA1-204ENST00000540738 NIT1Q86X76 327 aa11.14□□□□□ -0.63
COLCA1-204ENST00000540738 OR2K2Q8NGT1 345 aa11.14□□□□□ -0.63
COLCA1-204ENST00000540738 SHANK1Q9Y566 2161 aa11.13□□□□□ -0.63
COLCA1-204ENST00000540738 HIST2H2BCQ6DN03 193 aa11.13□□□□□ -0.63
COLCA1-204ENST00000540738 SH2D6Q7Z4S9 175 aa11.13□□□□□ -0.63
COLCA1-204ENST00000540738 LY6G6DO95868 133 aa11.13□□□□□ -0.63
COLCA1-204ENST00000540738 MEGF9Q9H1U4 602 aa11.13□□□□□ -0.63
COLCA1-204ENST00000540738 CCDC168Q8NDH2 2452 aa11.13□□□□□ -0.63
COLCA1-204ENST00000540738 CCL18P55774 89 aa11.13□□□□□ -0.63
COLCA1-204ENST00000540738 CEP192Q8TEP8 1941 aa11.13□□□□□ -0.63
COLCA1-204ENST00000540738 C2orf70A6NJV1 201 aa11.13□□□□□ -0.63
COLCA1-204ENST00000540738 ZNRF2Q8NHG8 242 aa11.13□□□□□ -0.63
COLCA1-204ENST00000540738 C11orf68Q9H3H3 251 aaKnown RBP11.13□□□□□ -0.63
COLCA1-204ENST00000540738 CGB3P0DN86 165 aa11.13□□□□□ -0.63
COLCA1-204ENST00000540738 C16orf74Q96GX8 76 aa11.13□□□□□ -0.63
COLCA1-204ENST00000540738 FNDC4Q9H6D8 234 aaPredicted RBP11.13□□□□□ -0.63
COLCA1-204ENST00000540738 PRSS46E5RG02 174 aa11.12□□□□□ -0.63
COLCA1-204ENST00000540738 ATP5G1P05496 136 aa11.12□□□□□ -0.63
COLCA1-204ENST00000540738 TRBV24-1A0A075B6N3 115 aa11.12□□□□□ -0.63
COLCA1-204ENST00000540738 I3L3M4 83 aa11.12□□□□□ -0.63
COLCA1-204ENST00000540738 RBAKDNA6NC62 111 aa11.12□□□□□ -0.63
COLCA1-204ENST00000540738 CST9LQ9H4G1 147 aa11.12□□□□□ -0.63
COLCA1-204ENST00000540738 MRPL16Q9NX20 251 aaKnown RBP11.12□□□□□ -0.63
COLCA1-204ENST00000540738 C11orf71Q6IPW1 123 aa11.12□□□□□ -0.63
COLCA1-204ENST00000540738 I3L2K1 104 aa11.11□□□□□ -0.63
COLCA1-204ENST00000540738 C8orf49Q96NF6 230 aa11.11□□□□□ -0.63
COLCA1-204ENST00000540738 K7EIM0 57 aa11.11□□□□□ -0.63
COLCA1-204ENST00000540738 CRYGCP07315 174 aa11.11□□□□□ -0.63
COLCA1-204ENST00000540738 LINC00479Q96M42 142 aa11.11□□□□□ -0.63
COLCA1-204ENST00000540738 NOP10Q9NPE3 64 aaKnown RBP11.11□□□□□ -0.63
COLCA1-204ENST00000540738 ALPK3Q96L96 1907 aa11.11□□□□□ -0.63
COLCA1-204ENST00000540738 GAGE10A6NGK3 116 aa11.1□□□□□ -0.63
COLCA1-204ENST00000540738 TMEM238C9JI98 176 aa11.1□□□□□ -0.63
COLCA1-204ENST00000540738 SRSF3P84103 164 aaKnown RBP11.1□□□□□ -0.63
COLCA1-204ENST00000540738 APRG1Q8IVJ8 170 aa11.1□□□□□ -0.63
COLCA1-204ENST00000540738 ZNF815PA8K554 130 aa11.1□□□□□ -0.63
COLCA1-204ENST00000540738 AMN1Q8IY45 258 aa11.1□□□□□ -0.63
COLCA1-204ENST00000540738 DLX4Q92988 240 aaPredicted RBP11.1□□□□□ -0.63
COLCA1-204ENST00000540738 DENND4AQ7Z401 1863 aa11.1□□□□□ -0.63
COLCA1-204ENST00000540738 CTSGP08311 255 aa11.1□□□□□ -0.63
COLCA1-204ENST00000540738 PRR20EP86478 221 aa11.1□□□□□ -0.63
COLCA1-204ENST00000540738 PRR20CP86479 221 aa11.1□□□□□ -0.63
COLCA1-204ENST00000540738 PRR20DP86480 221 aa11.1□□□□□ -0.63
COLCA1-204ENST00000540738 PRR20BP86481 221 aa11.1□□□□□ -0.63
COLCA1-204ENST00000540738 PRR20AP86496 221 aa11.1□□□□□ -0.63
COLCA1-204ENST00000540738 ODF3BA8MYP8 253 aa11.09□□□□□ -0.63
COLCA1-204ENST00000540738 EP400Q96L91 3159 aa11.09□□□□□ -0.63
COLCA1-204ENST00000540738 C16orf54Q6UWD8 224 aa11.09□□□□□ -0.63
COLCA1-204ENST00000540738 MRPL23Q16540 153 aaKnown RBP11.09□□□□□ -0.63
COLCA1-204ENST00000540738 NCKAP5O14513 1909 aa11.08□□□□□ -0.63
COLCA1-204ENST00000540738 FXYD5Q96DB9 178 aa11.08□□□□□ -0.64
COLCA1-204ENST00000540738 MUC22E2RYF6 1773 aaPredicted RBP11.08□□□□□ -0.64
COLCA1-204ENST00000540738 MYMXA0A1B0GTQ4 84 aa11.08□□□□□ -0.64
COLCA1-204ENST00000540738 GSN-AS1Q9NRJ2 163 aa11.08□□□□□ -0.64
COLCA1-204ENST00000540738 ZNF106Q9H2Y7 1883 aaKnown RBP11.08□□□□□ -0.64
COLCA1-204ENST00000540738 TNFRSF6BO95407 300 aa11.08□□□□□ -0.64
COLCA1-204ENST00000540738 ICOSQ9Y6W8 199 aa11.08□□□□□ -0.64
COLCA1-204ENST00000540738 U3KQE9 123 aa11.08□□□□□ -0.64
COLCA1-204ENST00000540738 PCDH15Q96QU1 1955 aa11.08□□□□□ -0.64
COLCA1-204ENST00000540738 TRAV2A0A0B4J234 112 aa11.07□□□□□ -0.64
COLCA1-204ENST00000540738 A0A0U1RRA0 63 aa11.07□□□□□ -0.64
COLCA1-204ENST00000540738 IGHV3-64A0A075B6Q5 118 aa11.07□□□□□ -0.64
COLCA1-204ENST00000540738 WIPF3A6NGB9 483 aa11.07□□□□□ -0.64
COLCA1-204ENST00000540738 GGTLC3B5MD39 225 aa11.07□□□□□ -0.64
COLCA1-204ENST00000540738 SCGB1A1P11684 91 aa11.07□□□□□ -0.64
COLCA1-204ENST00000540738 RITA1Q96K30 269 aa11.07□□□□□ -0.64
COLCA1-204ENST00000540738 IGHV1-24A0A0C4DH33 117 aa11.07□□□□□ -0.64
COLCA1-204ENST00000540738 IGHG4P01861 327 aa11.07□□□□□ -0.64
COLCA1-204ENST00000540738 CGB7P0DN87 165 aa11.07□□□□□ -0.64
COLCA1-204ENST00000540738 SDHAF1A6NFY7 115 aa11.06□□□□□ -0.64
COLCA1-204ENST00000540738 F6UB75 175 aa11.06□□□□□ -0.64
COLCA1-204ENST00000540738 GAGE6Q13070 117 aa11.06□□□□□ -0.64
COLCA1-204ENST00000540738 PGPEP1Q9NXJ5 209 aa11.06□□□□□ -0.64
COLCA1-204ENST00000540738 INS-IGF2F8WCM5 200 aa11.06□□□□□ -0.64
COLCA1-204ENST00000540738 C22orf34Q6ZV56 151 aa11.06□□□□□ -0.64
COLCA1-204ENST00000540738 MBD6Q96DN6 1003 aa11.06□□□□□ -0.64
COLCA1-204ENST00000540738 DSCAMO60469 2012 aa11.06□□□□□ -0.64
COLCA1-204ENST00000540738 TMEM141Q96I45 108 aa11.06□□□□□ -0.64
COLCA1-204ENST00000540738 AGPAT4-IT1Q9H0P7 198 aa11.06□□□□□ -0.64
COLCA1-204ENST00000540738 A0A0J9YY99 117 aa11.06□□□□□ -0.64
COLCA1-204ENST00000540738 IGLV2-23P01705 113 aa11.06□□□□□ -0.64
COLCA1-204ENST00000540738 ANGP03950 147 aaKnown RBP11.06□□□□□ -0.64
COLCA1-204ENST00000540738 FAM231DQ6ZW35 169 aa11.06□□□□□ -0.64
COLCA1-204ENST00000540738 PRIMA1Q86XR5 153 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms