RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 hDV102S1A0JD36 115 aa8.31□□□□□ -1.08
CLIP1-213ENST00000540338 F8W735 103 aaPredicted RBP8.31□□□□□ -1.08
CLIP1-213ENST00000540338 IGF1P05019 195 aa8.31□□□□□ -1.08
CLIP1-213ENST00000540338 CRIP1P50238 77 aa8.31□□□□□ -1.08
CLIP1-213ENST00000540338 FXYD7P58549 80 aa8.31□□□□□ -1.08
CLIP1-213ENST00000540338 PSMG4Q5JS54 123 aa8.31□□□□□ -1.08
CLIP1-213ENST00000540338 PRSS57Q6UWY2 283 aa8.31□□□□□ -1.08
CLIP1-213ENST00000540338 LINC00469Q8N7U9 141 aa8.31□□□□□ -1.08
CLIP1-213ENST00000540338 MCRIP2Q9BUT9 160 aaKnown RBP8.31□□□□□ -1.08
CLIP1-213ENST00000540338 KLK15Q9H2R5 256 aa8.31□□□□□ -1.08
CLIP1-213ENST00000540338 NUTF2P61970 127 aaKnown RBP8.3□□□□□ -1.08
CLIP1-213ENST00000540338 Q5PR19 223 aa8.3□□□□□ -1.08
CLIP1-213ENST00000540338 DUX5Q96PT3 197 aa8.3□□□□□ -1.08
CLIP1-213ENST00000540338 LENEPQ9Y5L5 61 aa8.3□□□□□ -1.08
CLIP1-213ENST00000540338 VWC2LB2RUY7 222 aa8.3□□□□□ -1.08
CLIP1-213ENST00000540338 TNFRSF6BO95407 300 aa8.3□□□□□ -1.08
CLIP1-213ENST00000540338 ZNF688P0C7X2 276 aa8.3□□□□□ -1.08
CLIP1-213ENST00000540338 LINC00310P59036 64 aa8.3□□□□□ -1.08
CLIP1-213ENST00000540338 CD7P09564 240 aa8.3□□□□□ -1.08
CLIP1-213ENST00000540338 FCER1GP30273 86 aa8.3□□□□□ -1.08
CLIP1-213ENST00000540338 WFDC12Q8WWY7 111 aa8.3□□□□□ -1.08
CLIP1-213ENST00000540338 BEX4Q9NWD9 120 aaPredicted RBP8.3□□□□□ -1.08
CLIP1-213ENST00000540338 SMPXQ9UHP9 88 aa8.3□□□□□ -1.08
CLIP1-213ENST00000540338 NPYP01303 97 aa8.29□□□□□ -1.08
CLIP1-213ENST00000540338 PTTG1IPP53801 180 aa8.29□□□□□ -1.08
CLIP1-213ENST00000540338 SRSF1Q07955 248 aaKnown RBP eCLIP8.29□□□□□ -1.08
CLIP1-213ENST00000540338 LINC01559Q495D7 138 aa8.29□□□□□ -1.08
CLIP1-213ENST00000540338 DUSP14O95147 198 aaKnown RBP8.29□□□□□ -1.08
CLIP1-213ENST00000540338 ZNF80P51504 273 aaPredicted RBP8.29□□□□□ -1.08
CLIP1-213ENST00000540338 TMEM95Q3KNT9 176 aa8.29□□□□□ -1.08
CLIP1-213ENST00000540338 TMEM208Q9BTX3 173 aa8.29□□□□□ -1.08
CLIP1-213ENST00000540338 C7orf71A4D174 169 aa8.29□□□□□ -1.08
CLIP1-213ENST00000540338 IGLL1P15814 213 aa8.29□□□□□ -1.08
CLIP1-213ENST00000540338 SYNJ2BPP57105 145 aa8.29□□□□□ -1.08
CLIP1-213ENST00000540338 OR2K2Q8NGT1 345 aa8.29□□□□□ -1.08
CLIP1-213ENST00000540338 AJUBAQ96IF1 538 aa8.29□□□□□ -1.08
CLIP1-213ENST00000540338 FOXC2Q99958 501 aa8.29□□□□□ -1.08
CLIP1-213ENST00000540338 PKD1L2Q7Z442 2459 aa8.29□□□□□ -1.08
CLIP1-213ENST00000540338 TRBV12-3P01733 135 aa8.28□□□□□ -1.08
CLIP1-213ENST00000540338 UNQ9165/PRO28630Q6UXU0 137 aa8.28□□□□□ -1.08
CLIP1-213ENST00000540338 SNAI2O43623 268 aa8.28□□□□□ -1.08
CLIP1-213ENST00000540338 CTRLP40313 264 aa8.28□□□□□ -1.08
CLIP1-213ENST00000540338 FOXE3Q13461 319 aa8.28□□□□□ -1.08
CLIP1-213ENST00000540338 FAM74A4Q5TZK3 123 aa8.28□□□□□ -1.08
CLIP1-213ENST00000540338 C9orf47Q6ZRZ4 202 aa8.28□□□□□ -1.08
CLIP1-213ENST00000540338 FRYQ5TBA9 3013 aa8.28□□□□□ -1.08
CLIP1-213ENST00000540338 CBY3A6NI87 242 aa8.28□□□□□ -1.08
CLIP1-213ENST00000540338 ZNF493Q6ZR52 646 aa8.28□□□□□ -1.08
CLIP1-213ENST00000540338 MSRB1Q9NZV6 116 aa8.28□□□□□ -1.08
CLIP1-213ENST00000540338 PEMTQ9UBM1 199 aa8.28□□□□□ -1.08
CLIP1-213ENST00000540338 DOPEY2Q9Y3R5 2298 aa8.28□□□□□ -1.08
CLIP1-213ENST00000540338 MUC3AQ02505 3323 aa8.28□□□□□ -1.08
CLIP1-213ENST00000540338 DPH3P1Q9H4G8 78 aa8.28□□□□□ -1.08
CLIP1-213ENST00000540338 SRSF2Q01130 221 aaKnown RBP8.27□□□□□ -1.09
CLIP1-213ENST00000540338 Q96MF0 132 aa8.27□□□□□ -1.09
CLIP1-213ENST00000540338 VPREB3Q9UKI3 123 aa8.27□□□□□ -1.09
CLIP1-213ENST00000540338 MRPS16Q9Y3D3 137 aaKnown RBP8.27□□□□□ -1.09
CLIP1-213ENST00000540338 A6NDN8 102 aa8.27□□□□□ -1.09
CLIP1-213ENST00000540338 LAGE3Q14657 143 aa8.27□□□□□ -1.09
CLIP1-213ENST00000540338 MAJINQ3KP22 176 aa8.27□□□□□ -1.09
CLIP1-213ENST00000540338 LINC00173Q6ZV60 143 aa8.27□□□□□ -1.09
CLIP1-213ENST00000540338 KIR2DL4Q99706 377 aa8.27□□□□□ -1.09
CLIP1-213ENST00000540338 ZNF747Q9BV97 191 aa8.27□□□□□ -1.09
CLIP1-213ENST00000540338 TMEM160Q9NX00 188 aa8.27□□□□□ -1.09
CLIP1-213ENST00000540338 ELANEP08246 267 aa8.27□□□□□ -1.09
CLIP1-213ENST00000540338 C14orf178Q8N769 122 aaPredicted RBP8.27□□□□□ -1.09
CLIP1-213ENST00000540338 SCGB3A1Q96QR1 104 aa8.27□□□□□ -1.09
CLIP1-213ENST00000540338 NAV2Q8IVL1 2488 aa8.26□□□□□ -1.09
CLIP1-213ENST00000540338 TRAV12-3A0A0B4J271 114 aa8.26□□□□□ -1.09
CLIP1-213ENST00000540338 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.26□□□□□ -1.09
CLIP1-213ENST00000540338 OR4C5Q8NGB2 326 aa8.26□□□□□ -1.09
CLIP1-213ENST00000540338 MYO18BQ8IUG5 2567 aa8.26□□□□□ -1.09
CLIP1-213ENST00000540338 F6UB75 175 aa8.26□□□□□ -1.09
CLIP1-213ENST00000540338 ZNF56Q15929 161 aa8.26□□□□□ -1.09
CLIP1-213ENST00000540338 ANXA2RQ3ZCQ2 193 aa8.26□□□□□ -1.09
CLIP1-213ENST00000540338 ORMDL2Q53FV1 153 aa8.26□□□□□ -1.09
CLIP1-213ENST00000540338 TMEM158Q8WZ71 300 aa8.26□□□□□ -1.09
CLIP1-213ENST00000540338 C2orf70A6NJV1 201 aa8.26□□□□□ -1.09
CLIP1-213ENST00000540338 DEFB113Q30KQ7 82 aa8.26□□□□□ -1.09
CLIP1-213ENST00000540338 MRAP2Q96G30 205 aa8.25□□□□□ -1.09
CLIP1-213ENST00000540338 RAX2Q96IS3 184 aa8.25□□□□□ -1.09
CLIP1-213ENST00000540338 BOD1L1Q8NFC6 3051 aa8.25□□□□□ -1.09
CLIP1-213ENST00000540338 HOXA3O43365 443 aaPredicted RBP8.25□□□□□ -1.09
CLIP1-213ENST00000540338 Q8N8P6 123 aa8.25□□□□□ -1.09
CLIP1-213ENST00000540338 CLPSL1A2RUU4 121 aa8.25□□□□□ -1.09
CLIP1-213ENST00000540338 K7EMT4 169 aa8.25□□□□□ -1.09
CLIP1-213ENST00000540338 IGLC6P0CF74 106 aa8.25□□□□□ -1.09
CLIP1-213ENST00000540338 DPM2O94777 84 aa8.24□□□□□ -1.09
CLIP1-213ENST00000540338 Q71RC1 249 aaPredicted RBP8.24□□□□□ -1.09
CLIP1-213ENST00000540338 GPHB5Q86YW7 130 aa8.24□□□□□ -1.09
CLIP1-213ENST00000540338 RNF114Q9Y508 228 aa8.24□□□□□ -1.09
CLIP1-213ENST00000540338 WDFY3Q8IZQ1 3526 aa8.24□□□□□ -1.09
CLIP1-213ENST00000540338 HERVK_113P61574 105 aa8.23□□□□□ -1.09
CLIP1-213ENST00000540338 LOXL1Q08397 574 aaPredicted RBP8.23□□□□□ -1.09
CLIP1-213ENST00000540338 LGALS9BQ3B8N2 356 aa8.23□□□□□ -1.09
CLIP1-213ENST00000540338 LGALS9CQ6DKI2 356 aa8.23□□□□□ -1.09
CLIP1-213ENST00000540338 USP9YO00507 2555 aaPredicted RBP8.23□□□□□ -1.09
CLIP1-213ENST00000540338 IGKCP01834 107 aa8.23□□□□□ -1.09
CLIP1-213ENST00000540338 PIFOQ8TCI5 191 aa8.23□□□□□ -1.09
CLIP1-213ENST00000540338 TRAV8-2A0A0B4J237 113 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms