RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 TSSC4Q9Y5U2 329 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-237ENST00000539504 ZFHX2Q9C0A1 2572 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-237ENST00000539504 AZU1P20160 251 aa8.72□□□□□ -1.01
SYNE1-237ENST00000539504 LAGE3Q14657 143 aa8.72□□□□□ -1.01
SYNE1-237ENST00000539504 ETDBQ3ZM63 59 aa8.72□□□□□ -1.01
SYNE1-237ENST00000539504 LCNL1Q6ZST4 164 aa8.72□□□□□ -1.01
SYNE1-237ENST00000539504 MAPKAPK5-AS1Q8N8E1 139 aa8.72□□□□□ -1.01
SYNE1-237ENST00000539504 NPBQ8NG41 125 aa8.72□□□□□ -1.01
SYNE1-237ENST00000539504 SIGMAR1Q99720 223 aa8.72□□□□□ -1.01
SYNE1-237ENST00000539504 CLEC3BP05452 202 aa8.71□□□□□ -1.01
SYNE1-237ENST00000539504 SH2D6Q7Z4S9 175 aa8.71□□□□□ -1.01
SYNE1-237ENST00000539504 IGLL5B9A064 214 aa8.71□□□□□ -1.02
SYNE1-237ENST00000539504 IGHG4P01861 327 aa8.71□□□□□ -1.02
SYNE1-237ENST00000539504 C15orf32Q32M92 178 aa8.71□□□□□ -1.02
SYNE1-237ENST00000539504 ZMAT4Q9H898 229 aa8.7□□□□□ -1.02
SYNE1-237ENST00000539504 IGKV3D-20A0A0C4DH25 116 aa8.7□□□□□ -1.02
SYNE1-237ENST00000539504 C12orf74Q32Q52 190 aa8.7□□□□□ -1.02
SYNE1-237ENST00000539504 LINC01559Q495D7 138 aa8.7□□□□□ -1.02
SYNE1-237ENST00000539504 CCDC144NLQ6NUI1 221 aa8.7□□□□□ -1.02
SYNE1-237ENST00000539504 AGPAT4-IT1Q9H0P7 198 aa8.7□□□□□ -1.02
SYNE1-237ENST00000539504 OR11H12B2RN74 326 aa8.7□□□□□ -1.02
SYNE1-237ENST00000539504 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-237ENST00000539504 CLEC19AQ6UXS0 136 aa8.7□□□□□ -1.02
SYNE1-237ENST00000539504 COX8CQ7Z4L0 72 aa8.7□□□□□ -1.02
SYNE1-237ENST00000539504 OR11H1Q8NG94 326 aa8.7□□□□□ -1.02
SYNE1-237ENST00000539504 OR11H2Q8NH07 326 aa8.7□□□□□ -1.02
SYNE1-237ENST00000539504 TLN1Q9Y490 2541 aaKnown RBP8.69□□□□□ -1.02
SYNE1-237ENST00000539504 H3BVH4 76 aa8.69□□□□□ -1.02
SYNE1-237ENST00000539504 SPRY2O43597 315 aa8.69□□□□□ -1.02
SYNE1-237ENST00000539504 OR11H6Q8NGC7 330 aa8.69□□□□□ -1.02
SYNE1-237ENST00000539504 PIFOQ8TCI5 191 aa8.69□□□□□ -1.02
SYNE1-237ENST00000539504 C11orf21Q9P2W6 132 aa8.69□□□□□ -1.02
SYNE1-237ENST00000539504 SRSF1Q07955 248 aaKnown RBP eCLIP8.69□□□□□ -1.02
SYNE1-237ENST00000539504 FOXI2Q6ZQN5 318 aa8.69□□□□□ -1.02
SYNE1-237ENST00000539504 ZNF48Q96MX3 618 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-237ENST00000539504 TM2D2Q9BX73 214 aa8.69□□□□□ -1.02
SYNE1-237ENST00000539504 SFTA2Q6UW10 78 aa8.69□□□□□ -1.02
SYNE1-237ENST00000539504 VMO1Q7Z5L0 202 aa8.69□□□□□ -1.02
SYNE1-237ENST00000539504 CYSLTR1Q9Y271 337 aa8.69□□□□□ -1.02
SYNE1-237ENST00000539504 DMXL1Q9Y485 3027 aa8.69□□□□□ -1.02
SYNE1-237ENST00000539504 GAGE12HA6NDE8 117 aa8.68□□□□□ -1.02
SYNE1-237ENST00000539504 E9PLD3 99 aa8.68□□□□□ -1.02
SYNE1-237ENST00000539504 M0R381 172 aa8.68□□□□□ -1.02
SYNE1-237ENST00000539504 CIDEAO60543 219 aa8.68□□□□□ -1.02
SYNE1-237ENST00000539504 GAGE13Q4V321 117 aa8.68□□□□□ -1.02
SYNE1-237ENST00000539504 PHLDA1Q8WV24 401 aaPredicted RBP8.68□□□□□ -1.02
SYNE1-237ENST00000539504 SCGB3A1Q96QR1 104 aa8.68□□□□□ -1.02
SYNE1-237ENST00000539504 CNFNQ9BYD5 112 aa8.68□□□□□ -1.02
SYNE1-237ENST00000539504 AKAP6Q13023 2319 aa8.68□□□□□ -1.02
SYNE1-237ENST00000539504 A0A087WX48 190 aa8.68□□□□□ -1.02
SYNE1-237ENST00000539504 PRTN3P24158 256 aa8.68□□□□□ -1.02
SYNE1-237ENST00000539504 S100A4P26447 101 aaKnown RBP8.68□□□□□ -1.02
SYNE1-237ENST00000539504 GRNP28799 593 aaKnown RBP8.68□□□□□ -1.02
SYNE1-237ENST00000539504 Q6ZQT7 251 aa8.68□□□□□ -1.02
SYNE1-237ENST00000539504 ZNF575Q86XF7 245 aa8.68□□□□□ -1.02
SYNE1-237ENST00000539504 AGRNO00468 2067 aa8.68□□□□□ -1.02
SYNE1-237ENST00000539504 A0A1B0GWB2 263 aa8.68□□□□□ -1.02
SYNE1-237ENST00000539504 F8W1H4 67 aa8.68□□□□□ -1.02
SYNE1-237ENST00000539504 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.68□□□□□ -1.02
SYNE1-237ENST00000539504 SLC50A1Q9BRV3 221 aa8.68□□□□□ -1.02
SYNE1-237ENST00000539504 CD300EQ496F6 205 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-237ENST00000539504 SCGB1D4Q6XE38 83 aa8.67□□□□□ -1.02
SYNE1-237ENST00000539504 IGHV7-81A0A0B4J1V7 117 aa8.67□□□□□ -1.02
SYNE1-237ENST00000539504 BUB3O43684 328 aa8.67□□□□□ -1.02
SYNE1-237ENST00000539504 PLNP26678 52 aa8.67□□□□□ -1.02
SYNE1-237ENST00000539504 SRSF2Q01130 221 aaKnown RBP8.67□□□□□ -1.02
SYNE1-237ENST00000539504 LY6G5BQ8NDX9 201 aa8.67□□□□□ -1.02
SYNE1-237ENST00000539504 MGPP08493 103 aa8.67□□□□□ -1.02
SYNE1-237ENST00000539504 IGF2-ASQ6U949 168 aa8.67□□□□□ -1.02
SYNE1-237ENST00000539504 Q8NA96 180 aa8.67□□□□□ -1.02
SYNE1-237ENST00000539504 SPANXB1Q9NS25 103 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-237ENST00000539504 CHTOPQ9Y3Y2 248 aaKnown RBP8.67□□□□□ -1.02
SYNE1-237ENST00000539504 H7C1H1 209 aa8.66□□□□□ -1.02
SYNE1-237ENST00000539504 RAB9AP51151 201 aa8.66□□□□□ -1.02
SYNE1-237ENST00000539504 C16orf92Q96LL3 132 aa8.66□□□□□ -1.02
SYNE1-237ENST00000539504 METTL26Q96S19 204 aa8.66□□□□□ -1.02
SYNE1-237ENST00000539504 CLEC2AQ6UVW9 174 aa8.66□□□□□ -1.02
SYNE1-237ENST00000539504 RAXQ9Y2V3 346 aa8.66□□□□□ -1.02
SYNE1-237ENST00000539504 IGLV2-18A0A075B6J9 118 aa8.66□□□□□ -1.02
SYNE1-237ENST00000539504 SRSF9Q13242 221 aaKnown RBP eCLIP8.66□□□□□ -1.02
SYNE1-237ENST00000539504 NRACQ8N912 160 aa8.66□□□□□ -1.02
SYNE1-237ENST00000539504 DEFB104AQ8WTQ1 72 aa8.66□□□□□ -1.02
SYNE1-237ENST00000539504 VKORC1Q9BQB6 163 aa8.66□□□□□ -1.02
SYNE1-237ENST00000539504 LOC107984156A0A0G2JMH3 177 aa8.65□□□□□ -1.02
SYNE1-237ENST00000539504 F8VRH5 84 aa8.65□□□□□ -1.02
SYNE1-237ENST00000539504 G3V318 75 aa8.65□□□□□ -1.02
SYNE1-237ENST00000539504 M0R1W7 72 aa8.65□□□□□ -1.02
SYNE1-237ENST00000539504 RRN3P1Q2M238 152 aa8.65□□□□□ -1.02
SYNE1-237ENST00000539504 ARL17AQ8IVW1 177 aa8.65□□□□□ -1.02
SYNE1-237ENST00000539504 SPAG8Q99932 426 aaPredicted RBP8.65□□□□□ -1.02
SYNE1-237ENST00000539504 MRPL16Q9NX20 251 aaKnown RBP8.65□□□□□ -1.02
SYNE1-237ENST00000539504 TAL2Q16559 108 aa8.65□□□□□ -1.02
SYNE1-237ENST00000539504 ZNF502Q8TBZ5 544 aa8.65□□□□□ -1.02
SYNE1-237ENST00000539504 LINC01546A6NGU7 62 aa8.65□□□□□ -1.03
SYNE1-237ENST00000539504 HOXA3O43365 443 aaPredicted RBP8.65□□□□□ -1.03
SYNE1-237ENST00000539504 C8orf86Q6ZUL3 223 aa8.65□□□□□ -1.03
SYNE1-237ENST00000539504 SMIM2Q9BVW6 85 aa8.65□□□□□ -1.03
SYNE1-237ENST00000539504 PGPEP1Q9NXJ5 209 aa8.65□□□□□ -1.03
SYNE1-237ENST00000539504 MYMXA0A1B0GTQ4 84 aa8.64□□□□□ -1.03
SYNE1-237ENST00000539504 ODF3BA8MYP8 253 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms