RNA–Protein interactions for RNA: ENST00000538696.5

CLN6-202, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2 BASIC

Gene CLN6, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-202ENST00000538696 BIN3Q9NQY0 253 aa12.75□□□□□ -0.37
CLN6-202ENST00000538696 AGRNO00468 2067 aa12.75□□□□□ -0.37
CLN6-202ENST00000538696 C19orf71A6NCJ1 209 aa12.74□□□□□ -0.37
CLN6-202ENST00000538696 NPIPB6E9PJ23 425 aa12.74□□□□□ -0.37
CLN6-202ENST00000538696 K7EIL1 84 aa12.74□□□□□ -0.37
CLN6-202ENST00000538696 GATCO43716 136 aaKnown RBP12.74□□□□□ -0.37
CLN6-202ENST00000538696 PFN1P07737 140 aaKnown RBP12.74□□□□□ -0.37
CLN6-202ENST00000538696 ZNF138P52744 262 aa12.74□□□□□ -0.37
CLN6-202ENST00000538696 CMC4P56277 68 aaPredicted RBP12.74□□□□□ -0.37
CLN6-202ENST00000538696 HIST1H1AQ02539 215 aaPredicted RBP12.74□□□□□ -0.37
CLN6-202ENST00000538696 ELOBQ15370 118 aa12.74□□□□□ -0.37
CLN6-202ENST00000538696 SAPCD1Q5SSQ6 148 aa12.74□□□□□ -0.37
CLN6-202ENST00000538696 TMEM78Q5T7P6 136 aa12.74□□□□□ -0.37
CLN6-202ENST00000538696 APRG1Q8IVJ8 170 aa12.74□□□□□ -0.37
CLN6-202ENST00000538696 DEFB125Q8N687 156 aa12.74□□□□□ -0.37
CLN6-202ENST00000538696 OR10J6PQ8NGY7 276 aa12.74□□□□□ -0.37
CLN6-202ENST00000538696 TGIF2-C20orf24A0A0A6YYL0 155 aa12.73□□□□□ -0.37
CLN6-202ENST00000538696 ZNF705GA8MUZ8 300 aaPredicted RBP12.73□□□□□ -0.37
CLN6-202ENST00000538696 CXCL1P09341 107 aa12.73□□□□□ -0.37
CLN6-202ENST00000538696 CRIP1P50238 77 aa12.73□□□□□ -0.37
CLN6-202ENST00000538696 COX8CQ7Z4L0 72 aa12.73□□□□□ -0.37
CLN6-202ENST00000538696 NDFIP1Q9BT67 221 aa12.73□□□□□ -0.37
CLN6-202ENST00000538696 IL36BQ9NZH7 164 aa12.73□□□□□ -0.37
CLN6-202ENST00000538696 KNCNA6PVL3 124 aa12.71□□□□□ -0.37
CLN6-202ENST00000538696 SH2D1AO60880 128 aa12.71□□□□□ -0.37
CLN6-202ENST00000538696 CA1P00915 261 aaPredicted RBP12.71□□□□□ -0.37
CLN6-202ENST00000538696 CT45A10P0DMU9 189 aa12.71□□□□□ -0.37
CLN6-202ENST00000538696 S100PP25815 95 aa12.71□□□□□ -0.37
CLN6-202ENST00000538696 ZNF80P51504 273 aaPredicted RBP12.71□□□□□ -0.37
CLN6-202ENST00000538696 SMUG1Q53HV7 270 aa12.71□□□□□ -0.37
CLN6-202ENST00000538696 GDF5OSQ5U4N7 250 aa12.71□□□□□ -0.37
CLN6-202ENST00000538696 IMMP2LQ96T52 175 aa12.71□□□□□ -0.37
CLN6-202ENST00000538696 RPP21Q9H633 154 aaKnown RBP12.71□□□□□ -0.37
CLN6-202ENST00000538696 SRD5A3Q9H8P0 318 aa12.71□□□□□ -0.37
CLN6-202ENST00000538696 PPP1R14DQ9NXH3 145 aa12.71□□□□□ -0.37
CLN6-202ENST00000538696 P01737 135 aa12.7□□□□□ -0.38
CLN6-202ENST00000538696 IGHV4-30-4P0DP06 118 aa12.7□□□□□ -0.38
CLN6-202ENST00000538696 FAM3BP58499 235 aaPredicted RBP12.7□□□□□ -0.38
CLN6-202ENST00000538696 DAZAP1Q96EP5 407 aaKnown RBP12.7□□□□□ -0.38
CLN6-202ENST00000538696 LINC00477Q96M19 166 aa12.7□□□□□ -0.38
CLN6-202ENST00000538696 A0A1W2PPQ1 181 aa12.69□□□□□ -0.38
CLN6-202ENST00000538696 TCL1AP56279 114 aa12.69□□□□□ -0.38
CLN6-202ENST00000538696 ACTL10Q5JWF8 245 aa12.69□□□□□ -0.38
CLN6-202ENST00000538696 PRR9Q5T870 116 aa12.69□□□□□ -0.38
CLN6-202ENST00000538696 KCNIP4Q6PIL6 250 aa12.69□□□□□ -0.38
CLN6-202ENST00000538696 FOXI2Q6ZQN5 318 aa12.69□□□□□ -0.38
CLN6-202ENST00000538696 PYGO2Q9BRQ0 406 aa12.69□□□□□ -0.38
CLN6-202ENST00000538696 SAV1Q9H4B6 383 aaPredicted RBP12.69□□□□□ -0.38
CLN6-202ENST00000538696 A0A0J9YX75 114 aa12.68□□□□□ -0.38
CLN6-202ENST00000538696 HLA-DRB4P13762 266 aa12.68□□□□□ -0.38
CLN6-202ENST00000538696 RPL19P84098 196 aaKnown RBP12.68□□□□□ -0.38
CLN6-202ENST00000538696 FAM162BQ5T6X4 162 aa12.68□□□□□ -0.38
CLN6-202ENST00000538696 OR4B1Q8NGF8 309 aa12.68□□□□□ -0.38
CLN6-202ENST00000538696 FAM19A4Q96LR4 140 aa12.68□□□□□ -0.38
CLN6-202ENST00000538696 HLA-DRB4X5D2U9 266 aa12.68□□□□□ -0.38
CLN6-202ENST00000538696 TRBV24-1A0A075B6N3 115 aa12.67□□□□□ -0.38
CLN6-202ENST00000538696 SMIM27A0A1W2PRY6 76 aa12.67□□□□□ -0.38
CLN6-202ENST00000538696 A8MZ25 164 aa12.67□□□□□ -0.38
CLN6-202ENST00000538696 RAB5AP20339 215 aa12.67□□□□□ -0.38
CLN6-202ENST00000538696 DEFA6Q01524 100 aa12.67□□□□□ -0.38
CLN6-202ENST00000538696 CT83Q5H943 113 aa12.67□□□□□ -0.38
CLN6-202ENST00000538696 ZFAND2AQ8N6M9 145 aa12.67□□□□□ -0.38
CLN6-202ENST00000538696 OR2D3Q8NGH3 330 aa12.67□□□□□ -0.38
CLN6-202ENST00000538696 FAM210BQ96KR6 192 aa12.67□□□□□ -0.38
CLN6-202ENST00000538696 TMA7Q9Y2S6 64 aaKnown RBP12.67□□□□□ -0.38
CLN6-202ENST00000538696 LENEPQ9Y5L5 61 aa12.67□□□□□ -0.38
CLN6-202ENST00000538696 RBMY1BA6NDE4 496 aaKnown RBP12.66□□□□□ -0.38
CLN6-202ENST00000538696 RBMY1EA6NEQ0 496 aaKnown RBP12.66□□□□□ -0.38
CLN6-202ENST00000538696 H3BMM0 161 aa12.66□□□□□ -0.38
CLN6-202ENST00000538696 J3KRW8 73 aa12.66□□□□□ -0.38
CLN6-202ENST00000538696 RBMY1DP0C7P1 496 aaKnown RBP12.66□□□□□ -0.38
CLN6-202ENST00000538696 EBLN2Q6P2I7 272 aa12.66□□□□□ -0.38
CLN6-202ENST00000538696 TRPT1Q86TN4 253 aaKnown RBP12.66□□□□□ -0.38
CLN6-202ENST00000538696 TSKUQ8WUA8 353 aa12.66□□□□□ -0.38
CLN6-202ENST00000538696 STHQ8IWL8 128 aa12.65□□□□□ -0.38
CLN6-202ENST00000538696 MRAPQ8TCY5 172 aa12.65□□□□□ -0.38
CLN6-202ENST00000538696 A8MTW9 85 aa12.64□□□□□ -0.39
CLN6-202ENST00000538696 DUSP14O95147 198 aaKnown RBP12.64□□□□□ -0.39
CLN6-202ENST00000538696 IGKV3-20P01619 116 aa12.64□□□□□ -0.39
CLN6-202ENST00000538696 GZMBP10144 247 aa12.64□□□□□ -0.39
CLN6-202ENST00000538696 CRISP2P16562 243 aa12.64□□□□□ -0.39
CLN6-202ENST00000538696 RPL35AP18077 110 aaKnown RBP12.64□□□□□ -0.39
CLN6-202ENST00000538696 Q6ZQT7 251 aa12.64□□□□□ -0.39
CLN6-202ENST00000538696 NEU1Q99519 415 aa12.64□□□□□ -0.39
CLN6-202ENST00000538696 TRAV9-1A0A075B6T8 112 aa12.63□□□□□ -0.39
CLN6-202ENST00000538696 TMSB15BA0A087X1C1 80 aa12.63□□□□□ -0.39
CLN6-202ENST00000538696 TRBV7-9A0A0J9YWB2 115 aa12.63□□□□□ -0.39
CLN6-202ENST00000538696 TMEM189A5PLL7 270 aa12.63□□□□□ -0.39
CLN6-202ENST00000538696 FABP5P3A8MUU1 101 aa12.63□□□□□ -0.39
CLN6-202ENST00000538696 A8MWL6 223 aa12.63□□□□□ -0.39
CLN6-202ENST00000538696 FRMD6-AS1P0C7T7 363 aa12.63□□□□□ -0.39
CLN6-202ENST00000538696 KIR3DS1Q14943 382 aa12.63□□□□□ -0.39
CLN6-202ENST00000538696 GTSF1Q8WW33 167 aa12.63□□□□□ -0.39
CLN6-202ENST00000538696 ODF3Q96PU9 254 aa12.63□□□□□ -0.39
CLN6-202ENST00000538696 C11orf21Q9P2W6 132 aa12.63□□□□□ -0.39
CLN6-202ENST00000538696 LOC102724200A0A096LPH7 203 aaPredicted RBP12.62□□□□□ -0.39
CLN6-202ENST00000538696 TYMSP04818 313 aa12.62□□□□□ -0.39
CLN6-202ENST00000538696 RPS10P46783 165 aaKnown RBP12.62□□□□□ -0.39
CLN6-202ENST00000538696 DEFB121Q5J5C9 76 aa12.62□□□□□ -0.39
CLN6-202ENST00000538696 NUP35Q8NFH5 326 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms