RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 OR4C46A6NHA9 309 aa15.85■□□□□ 0.13
VPS28-212ENST00000530836 FAM3BP58499 235 aaPredicted RBP15.85■□□□□ 0.13
VPS28-212ENST00000530836 GPR61Q9BZJ8 451 aa15.85■□□□□ 0.13
VPS28-212ENST00000530836 GFRA4Q9GZZ7 299 aa15.85■□□□□ 0.13
VPS28-212ENST00000530836 HIST1H1AQ02539 215 aaPredicted RBP15.84■□□□□ 0.13
VPS28-212ENST00000530836 CD300EQ496F6 205 aaPredicted RBP15.84■□□□□ 0.13
VPS28-212ENST00000530836 EBLN2Q6P2I7 272 aa15.84■□□□□ 0.13
VPS28-212ENST00000530836 OR2K2Q8NGT1 345 aa15.84■□□□□ 0.13
VPS28-212ENST00000530836 FABP5P3A8MUU1 101 aa15.83■□□□□ 0.13
VPS28-212ENST00000530836 TYMSP04818 313 aa15.83■□□□□ 0.13
VPS28-212ENST00000530836 CRIP1P50238 77 aa15.83■□□□□ 0.13
VPS28-212ENST00000530836 NAT8BQ9UHF3 227 aa15.83■□□□□ 0.13
VPS28-212ENST00000530836 XKRY2A2RUG3 117 aa15.83■□□□□ 0.12
VPS28-212ENST00000530836 CD33P20138 364 aa15.83■□□□□ 0.12
VPS28-212ENST00000530836 CMYA5Q8N3K9 4069 aa15.82■□□□□ 0.12
VPS28-212ENST00000530836 SH2D1AO60880 128 aa15.82■□□□□ 0.12
VPS28-212ENST00000530836 DUSP14O95147 198 aaKnown RBP15.82■□□□□ 0.12
VPS28-212ENST00000530836 FOXI2Q6ZQN5 318 aa15.82■□□□□ 0.12
VPS28-212ENST00000530836 OR2D3Q8NGH3 330 aa15.82■□□□□ 0.12
VPS28-212ENST00000530836 FAM19A4Q96LR4 140 aa15.82■□□□□ 0.12
VPS28-212ENST00000530836 ODF3Q96PU9 254 aa15.82■□□□□ 0.12
VPS28-212ENST00000530836 A0A0J9YX75 114 aa15.81■□□□□ 0.12
VPS28-212ENST00000530836 SAP30O75446 220 aa15.81■□□□□ 0.12
VPS28-212ENST00000530836 ZNF705DP0CH99 300 aaPredicted RBP15.81■□□□□ 0.12
VPS28-212ENST00000530836 ZNF705BP0CI00 300 aaPredicted RBP15.81■□□□□ 0.12
VPS28-212ENST00000530836 RPS10P46783 165 aaKnown RBP15.81■□□□□ 0.12
VPS28-212ENST00000530836 RPS20P60866 119 aaKnown RBP15.81■□□□□ 0.12
VPS28-212ENST00000530836 SAV1Q9H4B6 383 aaPredicted RBP15.81■□□□□ 0.12
VPS28-212ENST00000530836 SRD5A3Q9H8P0 318 aa15.81■□□□□ 0.12
VPS28-212ENST00000530836 TMA7Q9Y2S6 64 aaKnown RBP15.81■□□□□ 0.12
VPS28-212ENST00000530836 CA1P00915 261 aaPredicted RBP15.8■□□□□ 0.12
VPS28-212ENST00000530836 IZUMO1RA6ND01 250 aa15.79■□□□□ 0.12
VPS28-212ENST00000530836 F6UB75 175 aa15.79■□□□□ 0.12
VPS28-212ENST00000530836 CRISP2P16562 243 aa15.79■□□□□ 0.12
VPS28-212ENST00000530836 CMC4P56277 68 aaPredicted RBP15.79■□□□□ 0.12
VPS28-212ENST00000530836 COX19Q49B96 90 aa15.79■□□□□ 0.12
VPS28-212ENST00000530836 TMEM189A5PLL7 270 aa15.79■□□□□ 0.12
VPS28-212ENST00000530836 C1orf196B1AJZ1 125 aa15.79■□□□□ 0.12
VPS28-212ENST00000530836 Q6AWC8 147 aa15.79■□□□□ 0.12
VPS28-212ENST00000530836 APRG1Q8IVJ8 170 aa15.79■□□□□ 0.12
VPS28-212ENST00000530836 NEU1Q99519 415 aa15.79■□□□□ 0.12
VPS28-212ENST00000530836 NOTCH3Q9UM47 2321 aa15.78■□□□□ 0.12
VPS28-212ENST00000530836 IGLV1-51P01701 117 aa15.78■□□□□ 0.12
VPS28-212ENST00000530836 ZNF80P51504 273 aaPredicted RBP15.78■□□□□ 0.12
VPS28-212ENST00000530836 FOXA3P55318 350 aaPredicted RBP15.78■□□□□ 0.12
VPS28-212ENST00000530836 ZNF256Q9Y2P7 627 aaPredicted RBP15.78■□□□□ 0.12
VPS28-212ENST00000530836 HIGD1CA8MV81 97 aa15.77■□□□□ 0.12
VPS28-212ENST00000530836 LEPP41159 167 aa15.77■□□□□ 0.12
VPS28-212ENST00000530836 TCL1AP56279 114 aa15.77■□□□□ 0.12
VPS28-212ENST00000530836 RASL11AQ6T310 242 aa15.77■□□□□ 0.12
VPS28-212ENST00000530836 ZFAND2AQ8N6M9 145 aa15.77■□□□□ 0.12
VPS28-212ENST00000530836 MCRIP2Q9BUT9 160 aaKnown RBP15.77■□□□□ 0.12
VPS28-212ENST00000530836 IGLL1P15814 213 aa15.76■□□□□ 0.11
VPS28-212ENST00000530836 INSL3P51460 131 aa15.76■□□□□ 0.11
VPS28-212ENST00000530836 DEFB131AP59861 70 aa15.76■□□□□ 0.11
VPS28-212ENST00000530836 DEFB1P60022 68 aa15.76■□□□□ 0.11
VPS28-212ENST00000530836 NUP35Q8NFH5 326 aa15.76■□□□□ 0.11
VPS28-212ENST00000530836 TRAV21A0A0B4J279 112 aa15.76■□□□□ 0.11
VPS28-212ENST00000530836 GPX1P07203 203 aa15.76■□□□□ 0.11
VPS28-212ENST00000530836 TSPOP30536 169 aa15.76■□□□□ 0.11
VPS28-212ENST00000530836 RAB5BP61020 215 aa15.76■□□□□ 0.11
VPS28-212ENST00000530836 LINC01559Q495D7 138 aa15.76■□□□□ 0.11
VPS28-212ENST00000530836 ATP5L2Q7Z4Y8 100 aa15.76■□□□□ 0.11
VPS28-212ENST00000530836 GDF5OSQ5U4N7 250 aa15.75■□□□□ 0.11
VPS28-212ENST00000530836 MAP6D1Q9H9H5 199 aa15.75■□□□□ 0.11
VPS28-212ENST00000530836 ORM1P02763 201 aa15.74■□□□□ 0.11
VPS28-212ENST00000530836 HLA-DRB4P13762 266 aa15.74■□□□□ 0.11
VPS28-212ENST00000530836 OXLD1Q5BKU9 147 aa15.74■□□□□ 0.11
VPS28-212ENST00000530836 WDR73Q6P4I2 378 aa15.74■□□□□ 0.11
VPS28-212ENST00000530836 GTSF1Q8WW33 167 aa15.74■□□□□ 0.11
VPS28-212ENST00000530836 FAM110AQ9BQ89 295 aa15.74■□□□□ 0.11
VPS28-212ENST00000530836 HLA-DRB4X5D2U9 266 aa15.74■□□□□ 0.11
VPS28-212ENST00000530836 KLLNB2CW77 178 aa15.73■□□□□ 0.11
VPS28-212ENST00000530836 NBEAL1Q6ZS30 2694 aa15.73■□□□□ 0.11
VPS28-212ENST00000530836 A8MTW9 85 aa15.72■□□□□ 0.11
VPS28-212ENST00000530836 MT-ND6P03923 174 aa15.72■□□□□ 0.11
VPS28-212ENST00000530836 SAMD5Q5TGI4 173 aa15.72■□□□□ 0.11
VPS28-212ENST00000530836 GNB1LQ9BYB4 327 aa15.72■□□□□ 0.11
VPS28-212ENST00000530836 G3V4G9 280 aa15.72■□□□□ 0.11
VPS28-212ENST00000530836 CLUHP3Q96NS8 147 aa15.72■□□□□ 0.11
VPS28-212ENST00000530836 TRGC2P03986 189 aa15.71■□□□□ 0.11
VPS28-212ENST00000530836 CDKN1BP46527 198 aa15.71■□□□□ 0.11
VPS28-212ENST00000530836 C9orf66Q5T8R8 295 aa15.71■□□□□ 0.11
VPS28-212ENST00000530836 BORCS7Q96B45 105 aa15.71■□□□□ 0.11
VPS28-212ENST00000530836 OR11H12B2RN74 326 aa15.7■□□□□ 0.1
VPS28-212ENST00000530836 H3BMM0 161 aa15.7■□□□□ 0.1
VPS28-212ENST00000530836 RNASE4P34096 147 aaKnown RBP15.7■□□□□ 0.1
VPS28-212ENST00000530836 ACTL10Q5JWF8 245 aa15.7■□□□□ 0.1
VPS28-212ENST00000530836 PRR9Q5T870 116 aa15.7■□□□□ 0.1
VPS28-212ENST00000530836 PGLYRP4Q96LB8 373 aa15.7■□□□□ 0.1
VPS28-212ENST00000530836 A0A1B0GW15 77 aa15.69■□□□□ 0.1
VPS28-212ENST00000530836 GZMBP10144 247 aa15.69■□□□□ 0.1
VPS28-212ENST00000530836 MRPL54Q6P161 138 aaKnown RBP15.69■□□□□ 0.1
VPS28-212ENST00000530836 TRAPPC1Q9Y5R8 145 aa15.69■□□□□ 0.1
VPS28-212ENST00000530836 WIPF1O43516 503 aa15.68■□□□□ 0.1
VPS28-212ENST00000530836 SPINK4O60575 86 aa15.68■□□□□ 0.1
VPS28-212ENST00000530836 BEAN1Q3B7T3 259 aa15.68■□□□□ 0.1
VPS28-212ENST00000530836 ODF3L2Q3SX64 289 aa15.68■□□□□ 0.1
VPS28-212ENST00000530836 NOTCH1P46531 2555 aa15.68■□□□□ 0.1
VPS28-212ENST00000530836 TMSB15BA0A087X1C1 80 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms