RNA–Protein interactions for RNA: ENST00000530660.5

PCF11-204, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 2

Gene PCF11, Length 3,309 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-204ENST00000530660 IGFBP4P22692 258 aa10.99□□□□□ -0.65
PCF11-204ENST00000530660 DTX2Q86UW9 622 aa10.99□□□□□ -0.65
PCF11-204ENST00000530660 TMEM14CQ9P0S9 112 aa10.99□□□□□ -0.65
PCF11-204ENST00000530660 INS-IGF2F8WCM5 200 aa10.98□□□□□ -0.65
PCF11-204ENST00000530660 H7C1H1 209 aa10.98□□□□□ -0.65
PCF11-204ENST00000530660 CECR9P0C854 216 aa10.98□□□□□ -0.65
PCF11-204ENST00000530660 LAGE3Q14657 143 aa10.98□□□□□ -0.65
PCF11-204ENST00000530660 PRR25Q96S07 402 aa10.98□□□□□ -0.65
PCF11-204ENST00000530660 CCL11P51671 97 aa10.98□□□□□ -0.65
PCF11-204ENST00000530660 FOXC1Q12948 553 aa10.98□□□□□ -0.65
PCF11-204ENST00000530660 TMEM167AQ8TBQ9 72 aa10.98□□□□□ -0.65
PCF11-204ENST00000530660 TMEM126AQ9H061 195 aa10.98□□□□□ -0.65
PCF11-204ENST00000530660 TRAV8-4A0A0B4J246 113 aa10.97□□□□□ -0.65
PCF11-204ENST00000530660 ORM1P02763 201 aa10.97□□□□□ -0.65
PCF11-204ENST00000530660 IGLC6P0CF74 106 aa10.97□□□□□ -0.65
PCF11-204ENST00000530660 TMEM105Q8N8V8 129 aa10.97□□□□□ -0.65
PCF11-204ENST00000530660 LINC01559Q495D7 138 aa10.97□□□□□ -0.65
PCF11-204ENST00000530660 DMXL2Q8TDJ6 3036 aa10.97□□□□□ -0.65
PCF11-204ENST00000530660 IGKV3-15P01624 115 aa10.97□□□□□ -0.65
PCF11-204ENST00000530660 C10orf126Q8N4M7 172 aa10.97□□□□□ -0.65
PCF11-204ENST00000530660 CNEP1R1Q8N9A8 125 aa10.97□□□□□ -0.65
PCF11-204ENST00000530660 ROS1P08922 2347 aa10.97□□□□□ -0.65
PCF11-204ENST00000530660 RPL7P18124 248 aaKnown RBP10.96□□□□□ -0.65
PCF11-204ENST00000530660 MSMPQ1L6U9 139 aa10.96□□□□□ -0.65
PCF11-204ENST00000530660 SPXQ9BT56 116 aa10.96□□□□□ -0.65
PCF11-204ENST00000530660 TRAV2A0A0B4J234 112 aa10.96□□□□□ -0.66
PCF11-204ENST00000530660 OOSP1A8MZH6 123 aa10.96□□□□□ -0.66
PCF11-204ENST00000530660 TRGV3P03979 118 aa10.96□□□□□ -0.66
PCF11-204ENST00000530660 Q6ZS46 218 aa10.96□□□□□ -0.66
PCF11-204ENST00000530660 ELANEP08246 267 aa10.96□□□□□ -0.66
PCF11-204ENST00000530660 TACC2O95359 2948 aa10.95□□□□□ -0.66
PCF11-204ENST00000530660 TRGV5A0A0B4J1U4 118 aa10.95□□□□□ -0.66
PCF11-204ENST00000530660 IGHV3-72A0A0B4J1Y9 119 aa10.95□□□□□ -0.66
PCF11-204ENST00000530660 OR4C13Q8NGP0 309 aa10.95□□□□□ -0.66
PCF11-204ENST00000530660 SCNM1Q9BWG6 230 aa10.95□□□□□ -0.66
PCF11-204ENST00000530660 CEACAM4O75871 244 aa10.94□□□□□ -0.66
PCF11-204ENST00000530660 IGLV2-23P01705 113 aa10.94□□□□□ -0.66
PCF11-204ENST00000530660 IGFL4Q6B9Z1 124 aa10.94□□□□□ -0.66
PCF11-204ENST00000530660 ZNF833PQ6ZTB9 187 aa10.94□□□□□ -0.66
PCF11-204ENST00000530660 FAM216BQ8N7L0 139 aa10.94□□□□□ -0.66
PCF11-204ENST00000530660 DNAJC30Q96LL9 226 aa10.94□□□□□ -0.66
PCF11-204ENST00000530660 KLK5Q9Y337 293 aaPredicted RBP10.94□□□□□ -0.66
PCF11-204ENST00000530660 TPRP12270 2363 aaKnown RBP10.94□□□□□ -0.66
PCF11-204ENST00000530660 SMIM9A6NGZ8 99 aa10.94□□□□□ -0.66
PCF11-204ENST00000530660 CCL13Q99616 98 aa10.94□□□□□ -0.66
PCF11-204ENST00000530660 MRPS12O15235 138 aaKnown RBP10.94□□□□□ -0.66
PCF11-204ENST00000530660 ZNF56Q15929 161 aa10.94□□□□□ -0.66
PCF11-204ENST00000530660 Q6ZT83 130 aa10.94□□□□□ -0.66
PCF11-204ENST00000530660 PRO1854Q9UHT4 67 aa10.94□□□□□ -0.66
PCF11-204ENST00000530660 SPRY3O43610 288 aa10.93□□□□□ -0.66
PCF11-204ENST00000530660 COX6B1P14854 86 aa10.93□□□□□ -0.66
PCF11-204ENST00000530660 IGF2-ASQ6U949 168 aa10.93□□□□□ -0.66
PCF11-204ENST00000530660 TDHQ8IZJ6 230 aa10.93□□□□□ -0.66
PCF11-204ENST00000530660 LOC400499M0QZD8 3231 aa10.93□□□□□ -0.66
PCF11-204ENST00000530660 TNRC18O15417 2968 aaPredicted RBP10.93□□□□□ -0.66
PCF11-204ENST00000530660 IGHV4-39P01824 125 aa10.93□□□□□ -0.66
PCF11-204ENST00000530660 EMP1P54849 157 aa10.93□□□□□ -0.66
PCF11-204ENST00000530660 ZNF576Q9H609 170 aa10.93□□□□□ -0.66
PCF11-204ENST00000530660 SPANXA1Q9NS26 97 aa10.93□□□□□ -0.66
PCF11-204ENST00000530660 RAI1Q7Z5J4 1906 aaPredicted RBP10.93□□□□□ -0.66
PCF11-204ENST00000530660 A0A0J9YY99 117 aa10.92□□□□□ -0.66
PCF11-204ENST00000530660 K7EM74 188 aa10.92□□□□□ -0.66
PCF11-204ENST00000530660 TIMM23O14925 209 aa10.92□□□□□ -0.66
PCF11-204ENST00000530660 MRGPRG-AS1Q2M3A8 158 aa10.92□□□□□ -0.66
PCF11-204ENST00000530660 SCGB3A1Q96QR1 104 aa10.92□□□□□ -0.66
PCF11-204ENST00000530660 SHANK2-AS3Q9BTD1 123 aa10.92□□□□□ -0.66
PCF11-204ENST00000530660 DUSP14O95147 198 aaKnown RBP10.92□□□□□ -0.66
PCF11-204ENST00000530660 IGKV1-17P01599 117 aa10.92□□□□□ -0.66
PCF11-204ENST00000530660 IGHG4P01861 327 aa10.92□□□□□ -0.66
PCF11-204ENST00000530660 FAM19A5Q7Z5A7 132 aaPredicted RBP10.92□□□□□ -0.66
PCF11-204ENST00000530660 WNK2Q9Y3S1 2297 aa10.92□□□□□ -0.66
PCF11-204ENST00000530660 IGHV1-18A0A0C4DH31 117 aa10.92□□□□□ -0.66
PCF11-204ENST00000530660 ENSAO43768 121 aaKnown RBP10.92□□□□□ -0.66
PCF11-204ENST00000530660 PMS2CLQ68D20 193 aa10.92□□□□□ -0.66
PCF11-204ENST00000530660 NRACQ8N912 160 aa10.92□□□□□ -0.66
PCF11-204ENST00000530660 BEX4Q9NWD9 120 aaPredicted RBP10.92□□□□□ -0.66
PCF11-204ENST00000530660 IGHV3-30P01768 117 aa10.91□□□□□ -0.66
PCF11-204ENST00000530660 IGHV3-30-5P0DP03 117 aa10.91□□□□□ -0.66
PCF11-204ENST00000530660 CCL3L1P16619 93 aa10.91□□□□□ -0.66
PCF11-204ENST00000530660 UBTD1Q9HAC8 227 aa10.91□□□□□ -0.66
PCF11-204ENST00000530660 TRAV12-1A0A0B4J245 112 aa10.91□□□□□ -0.66
PCF11-204ENST00000530660 NEXN-AS1Q8NBZ9 246 aa10.91□□□□□ -0.66
PCF11-204ENST00000530660 S4R3C0 116 aa10.91□□□□□ -0.66
PCF11-204ENST00000530660 CEP250Q9BV73 2442 aa10.9□□□□□ -0.66
PCF11-204ENST00000530660 EIF4EBP3O60516 100 aaPredicted RBP10.9□□□□□ -0.66
PCF11-204ENST00000530660 CNTFRP26992 372 aa10.9□□□□□ -0.66
PCF11-204ENST00000530660 MZT1Q08AG7 82 aa10.9□□□□□ -0.66
PCF11-204ENST00000530660 CEMP1Q6PRD7 247 aaPredicted RBP10.9□□□□□ -0.66
PCF11-204ENST00000530660 MDS2Q8NDY4 140 aa10.9□□□□□ -0.66
PCF11-204ENST00000530660 LHBP01229 141 aa10.9□□□□□ -0.66
PCF11-204ENST00000530660 TCF15Q12870 199 aa10.9□□□□□ -0.66
PCF11-204ENST00000530660 ZNF474Q6S9Z5 364 aaPredicted RBP10.9□□□□□ -0.66
PCF11-204ENST00000530660 LYPD1Q8N2G4 141 aa10.9□□□□□ -0.66
PCF11-204ENST00000530660 MAFAQ8NHW3 353 aaPredicted RBP10.9□□□□□ -0.66
PCF11-204ENST00000530660 RP1L1Q8IWN7 2480 aaPredicted RBP10.89□□□□□ -0.67
PCF11-204ENST00000530660 H3BRN7 92 aa10.89□□□□□ -0.67
PCF11-204ENST00000530660 HLA-DMBP28068 263 aa10.89□□□□□ -0.67
PCF11-204ENST00000530660 C9orf153Q5TBE3 101 aa10.89□□□□□ -0.67
PCF11-204ENST00000530660 MALRD1Q5VYJ5 2156 aa10.89□□□□□ -0.67
PCF11-204ENST00000530660 FAM236AA0A1B0GUQ0 79 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms