RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 TP53TG3Q9ULZ0 132 aa14.29□□□□□ -0.12
VPS28-207ENST00000526977 CT45A10P0DMU9 189 aa14.29□□□□□ -0.12
VPS28-207ENST00000526977 SLURP1P55000 103 aa14.29□□□□□ -0.12
VPS28-207ENST00000526977 FOXA3P55318 350 aaPredicted RBP14.29□□□□□ -0.12
VPS28-207ENST00000526977 KRTAP10-3P60369 221 aa14.29□□□□□ -0.12
VPS28-207ENST00000526977 ERCC8Q13216 396 aa14.29□□□□□ -0.12
VPS28-207ENST00000526977 CDPF1Q6NVV7 123 aa14.29□□□□□ -0.12
VPS28-207ENST00000526977 Q8TAT8 98 aa14.29□□□□□ -0.12
VPS28-207ENST00000526977 APCSP02743 223 aa14.28□□□□□ -0.12
VPS28-207ENST00000526977 DUX3Q96PT4 197 aa14.28□□□□□ -0.12
VPS28-207ENST00000526977 RHPN1-AS1Q9BWJ2 59 aa14.28□□□□□ -0.12
VPS28-207ENST00000526977 PEMTQ9UBM1 199 aa14.28□□□□□ -0.12
VPS28-207ENST00000526977 TMEM213A2RRL7 107 aa14.27□□□□□ -0.12
VPS28-207ENST00000526977 RBAKDNA6NC62 111 aa14.27□□□□□ -0.12
VPS28-207ENST00000526977 CAMPP49913 170 aa14.27□□□□□ -0.12
VPS28-207ENST00000526977 SLAQ13239 276 aa14.27□□□□□ -0.12
VPS28-207ENST00000526977 ADARB2-AS1A8MUL3 147 aa14.27□□□□□ -0.13
VPS28-207ENST00000526977 LINC00310P59036 64 aa14.27□□□□□ -0.13
VPS28-207ENST00000526977 Q0VG73 95 aa14.27□□□□□ -0.13
VPS28-207ENST00000526977 MRPL53Q96EL3 112 aaKnown RBP14.27□□□□□ -0.13
VPS28-207ENST00000526977 GSN-AS1Q9NRJ2 163 aa14.27□□□□□ -0.13
VPS28-207ENST00000526977 S100A12P80511 92 aa14.26□□□□□ -0.13
VPS28-207ENST00000526977 DLX4Q92988 240 aaPredicted RBP14.26□□□□□ -0.13
VPS28-207ENST00000526977 TMEM18Q96B42 140 aa14.26□□□□□ -0.13
VPS28-207ENST00000526977 SH2D1AO60880 128 aa14.25□□□□□ -0.13
VPS28-207ENST00000526977 ZNF80P51504 273 aaPredicted RBP14.25□□□□□ -0.13
VPS28-207ENST00000526977 NSUN5P1Q3KNT7 163 aa14.25□□□□□ -0.13
VPS28-207ENST00000526977 FAM162BQ5T6X4 162 aa14.25□□□□□ -0.13
VPS28-207ENST00000526977 OR9G4Q8NGQ1 327 aa14.25□□□□□ -0.13
VPS28-207ENST00000526977 C16orf92Q96LL3 132 aa14.25□□□□□ -0.13
VPS28-207ENST00000526977 AGPAT4-IT1Q9H0P7 198 aa14.25□□□□□ -0.13
VPS28-207ENST00000526977 C2orf70A6NJV1 201 aa14.25□□□□□ -0.13
VPS28-207ENST00000526977 HBBP68871 147 aa14.25□□□□□ -0.13
VPS28-207ENST00000526977 PRIMA1Q86XR5 153 aa14.25□□□□□ -0.13
VPS28-207ENST00000526977 CLEC5AQ9NY25 188 aa14.25□□□□□ -0.13
VPS28-207ENST00000526977 F2Z2F3 143 aa14.24□□□□□ -0.13
VPS28-207ENST00000526977 KRTAP24-1Q3LI83 254 aa14.24□□□□□ -0.13
VPS28-207ENST00000526977 SSBP4Q9BWG4 385 aaPredicted RBP14.24□□□□□ -0.13
VPS28-207ENST00000526977 M0QZ24 198 aa14.24□□□□□ -0.13
VPS28-207ENST00000526977 TMEM189A5PLL7 270 aa14.23□□□□□ -0.13
VPS28-207ENST00000526977 ESDP10768 282 aa14.23□□□□□ -0.13
VPS28-207ENST00000526977 SRIP30626 198 aa14.23□□□□□ -0.13
VPS28-207ENST00000526977 JOSD1Q15040 202 aaPredicted RBP14.23□□□□□ -0.13
VPS28-207ENST00000526977 BAGE3Q86Y29 109 aa14.23□□□□□ -0.13
VPS28-207ENST00000526977 C20orf173Q96LM9 149 aa14.23□□□□□ -0.13
VPS28-207ENST00000526977 CITED1Q99966 193 aa14.23□□□□□ -0.13
VPS28-207ENST00000526977 NDFIP1Q9BT67 221 aa14.23□□□□□ -0.13
VPS28-207ENST00000526977 SOCS3O14543 225 aa14.22□□□□□ -0.13
VPS28-207ENST00000526977 SERF1AO75920 110 aa14.22□□□□□ -0.13
VPS28-207ENST00000526977 DNLZQ5SXM8 178 aa14.22□□□□□ -0.13
VPS28-207ENST00000526977 EDN2P20800 178 aa14.22□□□□□ -0.13
VPS28-207ENST00000526977 OR10J3Q5JRS4 329 aa14.22□□□□□ -0.13
VPS28-207ENST00000526977 C9orf47Q6ZRZ4 202 aa14.21□□□□□ -0.13
VPS28-207ENST00000526977 ZNF575Q86XF7 245 aa14.21□□□□□ -0.13
VPS28-207ENST00000526977 TMSB15BA0A087X1C1 80 aa14.2□□□□□ -0.14
VPS28-207ENST00000526977 A0A1B0GUT8 65 aa14.2□□□□□ -0.14
VPS28-207ENST00000526977 ZNF138P52744 262 aa14.2□□□□□ -0.14
VPS28-207ENST00000526977 RPL11P62913 178 aaKnown RBP14.2□□□□□ -0.14
VPS28-207ENST00000526977 PRR31Q5SQ13 230 aa14.2□□□□□ -0.14
VPS28-207ENST00000526977 NRN1Q9NPD7 142 aa14.2□□□□□ -0.14
VPS28-207ENST00000526977 FABP5P3A8MUU1 101 aa14.2□□□□□ -0.14
VPS28-207ENST00000526977 OVOL1O14753 267 aa14.2□□□□□ -0.14
VPS28-207ENST00000526977 ARMS2P0C7Q2 107 aa14.2□□□□□ -0.14
VPS28-207ENST00000526977 TMEM78Q5T7P6 136 aa14.2□□□□□ -0.14
VPS28-207ENST00000526977 CSN3P07498 182 aa14.19□□□□□ -0.14
VPS28-207ENST00000526977 ALKBH7Q9BT30 221 aaPredicted RBP14.19□□□□□ -0.14
VPS28-207ENST00000526977 PPP1R14DQ9NXH3 145 aa14.19□□□□□ -0.14
VPS28-207ENST00000526977 SELENOKQ9Y6D0 94 aa14.19□□□□□ -0.14
VPS28-207ENST00000526977 Q6AWC8 147 aa14.19□□□□□ -0.14
VPS28-207ENST00000526977 ADAMTSL5Q6ZMM2 481 aa14.19□□□□□ -0.14
VPS28-207ENST00000526977 ZNF738Q8NE65 137 aa14.19□□□□□ -0.14
VPS28-207ENST00000526977 SIGLEC8Q9NYZ4 499 aa14.19□□□□□ -0.14
VPS28-207ENST00000526977 RIGQ13278 110 aa14.18□□□□□ -0.14
VPS28-207ENST00000526977 SAMD13Q5VXD3 122 aa14.18□□□□□ -0.14
VPS28-207ENST00000526977 ATRQ13535 2644 aa14.17□□□□□ -0.14
VPS28-207ENST00000526977 IGKV3-7A0A075B6H7 116 aa14.17□□□□□ -0.14
VPS28-207ENST00000526977 ZNF705DP0CH99 300 aaPredicted RBP14.17□□□□□ -0.14
VPS28-207ENST00000526977 ZNF705BP0CI00 300 aaPredicted RBP14.17□□□□□ -0.14
VPS28-207ENST00000526977 PAFAH1B2P68402 229 aa14.17□□□□□ -0.14
VPS28-207ENST00000526977 LYZL1Q6UWQ5 148 aa14.17□□□□□ -0.14
VPS28-207ENST00000526977 C18orf32Q8TCD1 76 aa14.17□□□□□ -0.14
VPS28-207ENST00000526977 TMEM158Q8WZ71 300 aa14.17□□□□□ -0.14
VPS28-207ENST00000526977 TPPP3Q9BW30 176 aa14.17□□□□□ -0.14
VPS28-207ENST00000526977 PF4P02776 101 aa14.17□□□□□ -0.14
VPS28-207ENST00000526977 RPS20P60866 119 aaKnown RBP14.17□□□□□ -0.14
VPS28-207ENST00000526977 RCHY1Q96PM5 261 aa14.17□□□□□ -0.14
VPS28-207ENST00000526977 ORM1P02763 201 aa14.16□□□□□ -0.14
VPS28-207ENST00000526977 IQCJQ1A5X6 159 aa14.15□□□□□ -0.14
VPS28-207ENST00000526977 ZNF747Q9BV97 191 aa14.15□□□□□ -0.14
VPS28-207ENST00000526977 A0A1B0GW15 77 aa14.15□□□□□ -0.14
VPS28-207ENST00000526977 LINC00587B1AMM8 73 aa14.15□□□□□ -0.14
VPS28-207ENST00000526977 GATD1Q8NB37 220 aa14.15□□□□□ -0.14
VPS28-207ENST00000526977 DYNLRB2Q8TF09 96 aa14.15□□□□□ -0.14
VPS28-207ENST00000526977 LINC00477Q96M19 166 aa14.15□□□□□ -0.14
VPS28-207ENST00000526977 DEFB1P60022 68 aa14.14□□□□□ -0.15
VPS28-207ENST00000526977 LOC102724200A0A096LPH7 203 aaPredicted RBP14.14□□□□□ -0.15
VPS28-207ENST00000526977 HIST1H1AQ02539 215 aaPredicted RBP14.14□□□□□ -0.15
VPS28-207ENST00000526977 DEFB114Q30KQ6 69 aa14.14□□□□□ -0.15
VPS28-207ENST00000526977 LINC01559Q495D7 138 aa14.14□□□□□ -0.15
VPS28-207ENST00000526977 Q6ZWC4 215 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms