RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 ESPL1Q14674 2120 aa3.16□□□□□ -1.9
CD44-220ENST00000525688 IGHV1-58A0A0C4DH39 117 aa3.16□□□□□ -1.9
CD44-220ENST00000525688 A0A1B0GVY2 172 aa3.16□□□□□ -1.9
CD44-220ENST00000525688 A8MWL6 223 aa3.16□□□□□ -1.9
CD44-220ENST00000525688 A8MWP6 167 aa3.16□□□□□ -1.9
CD44-220ENST00000525688 I3L521 148 aa3.16□□□□□ -1.9
CD44-220ENST00000525688 ZNF324O75467 553 aaPredicted RBP3.16□□□□□ -1.9
CD44-220ENST00000525688 IGLV1-47P01700 117 aa3.16□□□□□ -1.9
CD44-220ENST00000525688 IFI6P09912 130 aa3.16□□□□□ -1.9
CD44-220ENST00000525688 LGALS3P17931 250 aaKnown RBP3.16□□□□□ -1.9
CD44-220ENST00000525688 ELK1P19419 428 aa3.16□□□□□ -1.9
CD44-220ENST00000525688 CRYGSP22914 178 aa3.16□□□□□ -1.9
CD44-220ENST00000525688 CRISP3P54108 245 aa3.16□□□□□ -1.9
CD44-220ENST00000525688 TAS2R45P59539 299 aa3.16□□□□□ -1.9
CD44-220ENST00000525688 RPL38P63173 70 aaKnown RBP3.16□□□□□ -1.9
CD44-220ENST00000525688 RHOGP84095 191 aa3.16□□□□□ -1.9
CD44-220ENST00000525688 RNASE13Q5GAN3 156 aaKnown RBP3.16□□□□□ -1.9
CD44-220ENST00000525688 SSX8Q7RTT4 187 aa3.16□□□□□ -1.9
CD44-220ENST00000525688 C9orf62Q8N4C0 152 aa3.16□□□□□ -1.9
CD44-220ENST00000525688 C10orf126Q8N4M7 172 aa3.16□□□□□ -1.9
CD44-220ENST00000525688 SDF2Q99470 211 aa3.16□□□□□ -1.9
CD44-220ENST00000525688 KLK5Q9Y337 293 aaPredicted RBP3.16□□□□□ -1.9
CD44-220ENST00000525688 ITPR2Q14571 2701 aa3.16□□□□□ -1.9
CD44-220ENST00000525688 TEX15Q9BXT5 2789 aa3.15□□□□□ -1.9
CD44-220ENST00000525688 A0A0G2JMM0 328 aa3.15□□□□□ -1.91
CD44-220ENST00000525688 A0A1W2PPB8 328 aa3.15□□□□□ -1.91
CD44-220ENST00000525688 A0A1W2PRS3 328 aa3.15□□□□□ -1.91
CD44-220ENST00000525688 ODAMA1E959 279 aa3.15□□□□□ -1.91
CD44-220ENST00000525688 PINLYPA6NC86 204 aa3.15□□□□□ -1.91
CD44-220ENST00000525688 KIR3DP1A8MWS1 328 aa3.15□□□□□ -1.91
CD44-220ENST00000525688 BUB1B-PAK6H3BSN5 160 aa3.15□□□□□ -1.91
CD44-220ENST00000525688 CST7O76096 145 aa3.15□□□□□ -1.91
CD44-220ENST00000525688 PRM2P04554 102 aa3.15□□□□□ -1.91
CD44-220ENST00000525688 ZNF688P0C7X2 276 aa3.15□□□□□ -1.91
CD44-220ENST00000525688 CCL3P10147 92 aa3.15□□□□□ -1.91
CD44-220ENST00000525688 FABP2P12104 132 aa3.15□□□□□ -1.91
CD44-220ENST00000525688 ZNF19P17023 458 aa3.15□□□□□ -1.91
CD44-220ENST00000525688 CMC4P56277 68 aaPredicted RBP3.15□□□□□ -1.91
CD44-220ENST00000525688 MEF2BQ02080 365 aaPredicted RBP3.15□□□□□ -1.91
CD44-220ENST00000525688 COL5A1-AS1Q5SY13 56 aa3.15□□□□□ -1.91
CD44-220ENST00000525688 LCE3CQ5T5A8 94 aa3.15□□□□□ -1.91
CD44-220ENST00000525688 AADACL3Q5VUY0 350 aa3.15□□□□□ -1.91
CD44-220ENST00000525688 LINC00305Q7Z4B0 112 aa3.15□□□□□ -1.91
CD44-220ENST00000525688 BRK1Q8WUW1 75 aa3.15□□□□□ -1.91
CD44-220ENST00000525688 SHANK2-AS3Q9BTD1 123 aa3.15□□□□□ -1.91
CD44-220ENST00000525688 DERL1Q9BUN8 251 aa3.15□□□□□ -1.91
CD44-220ENST00000525688 C1QTNF6Q9BXI9 259 aa3.15□□□□□ -1.91
CD44-220ENST00000525688 PROK2Q9HC23 129 aa3.15□□□□□ -1.91
CD44-220ENST00000525688 FUT9Q9Y231 359 aa3.15□□□□□ -1.91
CD44-220ENST00000525688 CHCHD2Q9Y6H1 151 aaPredicted RBP3.15□□□□□ -1.91
CD44-220ENST00000525688 FBN2P35556 2912 aa3.15□□□□□ -1.91
CD44-220ENST00000525688 DSPPQ9NZW4 1301 aa3.15□□□□□ -1.91
CD44-220ENST00000525688 ZGRF1Q86YA3 2104 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 CROCCQ5TZA2 2017 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 APCP25054 2843 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 IGHV3-43A0A0B4J1X8 118 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 A0A1B0GVX0 72 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 C1orf196B1AJZ1 125 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 TMEM256-PLSCR3K7ERE1 68 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 BPY2O14599 106 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 CDC42EP2O14613 210 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 SNAPC5O75971 98 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 NAPSAO96009 420 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 HIST1H1DP16402 221 aaKnown RBP3.14□□□□□ -1.91
CD44-220ENST00000525688 UBE2AP49459 152 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 FOXA3P55318 350 aaPredicted RBP3.14□□□□□ -1.91
CD44-220ENST00000525688 PLGLB1Q02325 96 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 NNATQ16517 81 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 LGALS9BQ3B8N2 356 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 LUZP6Q538Z0 58 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 HSD17B12Q53GQ0 312 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 LGALS9CQ6DKI2 356 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 GTF2H5Q6ZYL4 71 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 TRAPPC6BQ86SZ2 158 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 TMEM256Q8N2U0 113 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 PACRGLQ8N7B6 248 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 DAND5Q8N907 189 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 OR5D14Q8NGL3 314 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 OR10AC1Q8NH08 325 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 DEDD2Q8WXF8 326 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 TMEM158Q8WZ71 300 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 SLC25A46Q96AG3 418 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 CHCHD7Q9BUK0 85 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 TTTY12Q9BZ98 90 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 BANF2Q9H503 90 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 RPP21Q9H633 154 aaKnown RBP3.14□□□□□ -1.91
CD44-220ENST00000525688 IL36BQ9NZH7 164 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 CCDC167Q9P0B6 97 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 METTL1Q9UBP6 276 aaKnown RBP3.14□□□□□ -1.91
CD44-220ENST00000525688 MARCOQ9UEW3 520 aaPredicted RBP3.14□□□□□ -1.91
CD44-220ENST00000525688 ZNF835Q9Y2P0 537 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 DOPEY2Q9Y3R5 2298 aa3.14□□□□□ -1.91
CD44-220ENST00000525688 ZNF407Q9C0G0 2248 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 DSCAML1Q8TD84 2053 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 NOTCH3Q9UM47 2321 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 EML6Q6ZMW3 1958 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 EXPH5Q8NEV8 1989 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 IGLV11-55A0A075B6I3 123 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 TRAV13-1A0A0B4J241 112 aa3.13□□□□□ -1.91
CD44-220ENST00000525688 FAM236AA0A1B0GUQ0 79 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 197.4 ms