RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 SLC35B3Q9H1N7 401 aa5.66□□□□□ -1.5
LIMCH1-222ENST00000515847 RETNQ9HD89 108 aa5.66□□□□□ -1.5
LIMCH1-222ENST00000515847 VAX2Q9UIW0 290 aa5.66□□□□□ -1.5
LIMCH1-222ENST00000515847 ZFP30Q9Y2G7 519 aa5.66□□□□□ -1.5
LIMCH1-222ENST00000515847 AGRNO00468 2067 aa5.65□□□□□ -1.5
LIMCH1-222ENST00000515847 TRGV11A0A075B6L2 103 aa5.65□□□□□ -1.5
LIMCH1-222ENST00000515847 IGHV3OR16-12A0A075B7B8 117 aa5.65□□□□□ -1.5
LIMCH1-222ENST00000515847 TRAV21A0A0B4J279 112 aa5.65□□□□□ -1.5
LIMCH1-222ENST00000515847 TRBV6-1A0A0K0K1D8 114 aa5.65□□□□□ -1.5
LIMCH1-222ENST00000515847 A0A1B0GV50 99 aa5.65□□□□□ -1.5
LIMCH1-222ENST00000515847 KLLNB2CW77 178 aa5.65□□□□□ -1.5
LIMCH1-222ENST00000515847 PRAC2D3DTV9 90 aa5.65□□□□□ -1.5
LIMCH1-222ENST00000515847 RGS13O14921 159 aa5.65□□□□□ -1.5
LIMCH1-222ENST00000515847 EREGO14944 169 aa5.65□□□□□ -1.5
LIMCH1-222ENST00000515847 PAGE4O60829 102 aa5.65□□□□□ -1.5
LIMCH1-222ENST00000515847 ZNF705DP0CH99 300 aaPredicted RBP5.65□□□□□ -1.5
LIMCH1-222ENST00000515847 ZNF705BP0CI00 300 aaPredicted RBP5.65□□□□□ -1.5
LIMCH1-222ENST00000515847 SMUG1Q53HV7 270 aa5.65□□□□□ -1.5
LIMCH1-222ENST00000515847 ZNF705AQ6ZN79 300 aaPredicted RBP5.65□□□□□ -1.5
LIMCH1-222ENST00000515847 ZNF767PQ75MW2 155 aa5.65□□□□□ -1.5
LIMCH1-222ENST00000515847 KCNS1Q96KK3 526 aa5.65□□□□□ -1.5
LIMCH1-222ENST00000515847 WWC2-AS2Q96NR7 200 aa5.65□□□□□ -1.5
LIMCH1-222ENST00000515847 LINC01587Q99440 93 aa5.65□□□□□ -1.5
LIMCH1-222ENST00000515847 OVOL2Q9BRP0 275 aa5.65□□□□□ -1.5
LIMCH1-222ENST00000515847 AGPAT4-IT1Q9H0P7 198 aa5.65□□□□□ -1.5
LIMCH1-222ENST00000515847 TMPRSS5Q9H3S3 457 aa5.65□□□□□ -1.5
LIMCH1-222ENST00000515847 TREM1Q9NP99 234 aa5.65□□□□□ -1.5
LIMCH1-222ENST00000515847 PSG8Q9UQ74 426 aa5.65□□□□□ -1.5
LIMCH1-222ENST00000515847 YTHDF2Q9Y5A9 579 aaKnown RBP5.65□□□□□ -1.5
LIMCH1-222ENST00000515847 KRTAP4-8A0A0G2JLE6 195 aa5.64□□□□□ -1.51
LIMCH1-222ENST00000515847 SNURFLB1AK76 121 aa5.64□□□□□ -1.51
LIMCH1-222ENST00000515847 EIF3GO75821 320 aaKnown RBP eCLIP5.64□□□□□ -1.51
LIMCH1-222ENST00000515847 FXYD7P58549 80 aa5.64□□□□□ -1.51
LIMCH1-222ENST00000515847 DEFB1P60022 68 aa5.64□□□□□ -1.51
LIMCH1-222ENST00000515847 GNG5P63218 68 aa5.64□□□□□ -1.51
LIMCH1-222ENST00000515847 TMEM183BQ1AE95 376 aa5.64□□□□□ -1.51
LIMCH1-222ENST00000515847 GFI1BQ5VTD9 330 aa5.64□□□□□ -1.51
LIMCH1-222ENST00000515847 FAM159AQ6UWV7 190 aa5.64□□□□□ -1.51
LIMCH1-222ENST00000515847 Q86TA4 180 aa5.64□□□□□ -1.51
LIMCH1-222ENST00000515847 Q8TAT8 98 aa5.64□□□□□ -1.51
LIMCH1-222ENST00000515847 TMEM263Q8WUH6 116 aaKnown RBP5.64□□□□□ -1.51
LIMCH1-222ENST00000515847 C11orf52Q96A22 123 aa5.64□□□□□ -1.51
LIMCH1-222ENST00000515847 LINC00467Q9BRT7 94 aa5.64□□□□□ -1.51
LIMCH1-222ENST00000515847 SMDT1Q9H4I9 107 aa5.64□□□□□ -1.51
LIMCH1-222ENST00000515847 TRAV12-2A0A075B6T6 113 aa5.63□□□□□ -1.51
LIMCH1-222ENST00000515847 LOC102723971A0A1B0GUV8 181 aa5.63□□□□□ -1.51
LIMCH1-222ENST00000515847 TMEM250H0YL14 139 aa5.63□□□□□ -1.51
LIMCH1-222ENST00000515847 J3KRW8 73 aa5.63□□□□□ -1.51
LIMCH1-222ENST00000515847 PFN1P07737 140 aaKnown RBP5.63□□□□□ -1.51
LIMCH1-222ENST00000515847 ATP5G3P48201 142 aa5.63□□□□□ -1.51
LIMCH1-222ENST00000515847 ZNF415Q09FC8 603 aa5.63□□□□□ -1.51
LIMCH1-222ENST00000515847 ERCC8Q13216 396 aa5.63□□□□□ -1.51
LIMCH1-222ENST00000515847 IBA57Q5T440 356 aaKnown RBP5.63□□□□□ -1.51
LIMCH1-222ENST00000515847 Q6AWC8 147 aa5.63□□□□□ -1.51
LIMCH1-222ENST00000515847 PRNTQ86SH4 94 aa5.63□□□□□ -1.51
LIMCH1-222ENST00000515847 EIF4E3Q8N5X7 224 aaKnown RBP5.63□□□□□ -1.51
LIMCH1-222ENST00000515847 CSNK1G2-AS1Q8NCQ2 148 aa5.63□□□□□ -1.51
LIMCH1-222ENST00000515847 FAM19A4Q96LR4 140 aa5.63□□□□□ -1.51
LIMCH1-222ENST00000515847 VGLL1Q99990 258 aa5.63□□□□□ -1.51
LIMCH1-222ENST00000515847 EIF5A2Q9GZV4 153 aaKnown RBP5.63□□□□□ -1.51
LIMCH1-222ENST00000515847 SDF2L1Q9HCN8 221 aa5.63□□□□□ -1.51
LIMCH1-222ENST00000515847 IGHV1OR15-1A0A075B7D0 117 aa5.62□□□□□ -1.51
LIMCH1-222ENST00000515847 TRAV12-3A0A0B4J271 114 aa5.62□□□□□ -1.51
LIMCH1-222ENST00000515847 IGHV4-28A0A0C4DH34 117 aa5.62□□□□□ -1.51
LIMCH1-222ENST00000515847 CBY3A6NI87 242 aa5.62□□□□□ -1.51
LIMCH1-222ENST00000515847 LYRM9A8MSI8 78 aa5.62□□□□□ -1.51
LIMCH1-222ENST00000515847 CRXO43186 299 aaPredicted RBP5.62□□□□□ -1.51
LIMCH1-222ENST00000515847 GIG44P09565 113 aaPredicted RBP5.62□□□□□ -1.51
LIMCH1-222ENST00000515847 SPART-AS1P0CW21 52 aa5.62□□□□□ -1.51
LIMCH1-222ENST00000515847 RNASE4P34096 147 aaKnown RBP5.62□□□□□ -1.51
LIMCH1-222ENST00000515847 PEA15Q15121 130 aa5.62□□□□□ -1.51
LIMCH1-222ENST00000515847 ANXA2RQ3ZCQ2 193 aa5.62□□□□□ -1.51
LIMCH1-222ENST00000515847 FAM162BQ5T6X4 162 aa5.62□□□□□ -1.51
LIMCH1-222ENST00000515847 ZFAND2AQ8N6M9 145 aa5.62□□□□□ -1.51
LIMCH1-222ENST00000515847 Q8NAQ8 132 aa5.62□□□□□ -1.51
LIMCH1-222ENST00000515847 LYPD6BQ8NI32 183 aa5.62□□□□□ -1.51
LIMCH1-222ENST00000515847 KLF12Q9Y4X4 402 aa5.62□□□□□ -1.51
LIMCH1-222ENST00000515847 A0A0J9YWU9 116 aa5.61□□□□□ -1.51
LIMCH1-222ENST00000515847 XKRY2A2RUG3 117 aa5.61□□□□□ -1.51
LIMCH1-222ENST00000515847 CXorf65A6NEN9 183 aa5.61□□□□□ -1.51
LIMCH1-222ENST00000515847 NUPR2A6NF83 97 aa5.61□□□□□ -1.51
LIMCH1-222ENST00000515847 RBFOX3A6NFN3 312 aa5.61□□□□□ -1.51
LIMCH1-222ENST00000515847 C3orf84H3BNL1 204 aa5.61□□□□□ -1.51
LIMCH1-222ENST00000515847 GCGP01275 180 aa5.61□□□□□ -1.51
LIMCH1-222ENST00000515847 LTAP01374 205 aa5.61□□□□□ -1.51
LIMCH1-222ENST00000515847 HTN1P15515 57 aa5.61□□□□□ -1.51
LIMCH1-222ENST00000515847 GNG4P50150 75 aa5.61□□□□□ -1.51
LIMCH1-222ENST00000515847 CCL20P78556 96 aa5.61□□□□□ -1.51
LIMCH1-222ENST00000515847 BTN1A1Q13410 526 aa5.61□□□□□ -1.51
LIMCH1-222ENST00000515847 TOR2AQ5JU69 321 aa5.61□□□□□ -1.51
LIMCH1-222ENST00000515847 ZNF506Q5JVG8 444 aa5.61□□□□□ -1.51
LIMCH1-222ENST00000515847 CDPF1Q6NVV7 123 aa5.61□□□□□ -1.51
LIMCH1-222ENST00000515847 BAGE2Q86Y30 109 aa5.61□□□□□ -1.51
LIMCH1-222ENST00000515847 TMEM183AQ8IXX5 376 aa5.61□□□□□ -1.51
LIMCH1-222ENST00000515847 C1orf158Q8N1D5 194 aa5.61□□□□□ -1.51
LIMCH1-222ENST00000515847 C11orf45Q8TAV5 145 aa5.61□□□□□ -1.51
LIMCH1-222ENST00000515847 C2CD4CQ8TF44 421 aa5.61□□□□□ -1.51
LIMCH1-222ENST00000515847 FAM210AQ96ND0 272 aa5.61□□□□□ -1.51
LIMCH1-222ENST00000515847 NDUFAF3Q9BU61 184 aa5.61□□□□□ -1.51
LIMCH1-222ENST00000515847 MED9Q9NWA0 146 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms