RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 SMIM3Q9BZL3 60 aa12.12□□□□□ -0.47
DDX41-217ENST00000515562 MRPS16Q9Y3D3 137 aaKnown RBP12.12□□□□□ -0.47
DDX41-217ENST00000515562 KLF12Q9Y4X4 402 aa12.12□□□□□ -0.47
DDX41-217ENST00000515562 ZNF415Q09FC8 603 aa12.11□□□□□ -0.47
DDX41-217ENST00000515562 ESRGQ1W209 222 aa12.11□□□□□ -0.47
DDX41-217ENST00000515562 ZNF575Q86XF7 245 aa12.11□□□□□ -0.47
DDX41-217ENST00000515562 ST6GAL2Q96JF0 529 aa12.11□□□□□ -0.47
DDX41-217ENST00000515562 LENEPQ9Y5L5 61 aa12.11□□□□□ -0.47
DDX41-217ENST00000515562 A0A1W2PPQ1 181 aa12.1□□□□□ -0.47
DDX41-217ENST00000515562 ZNF266Q14584 549 aa12.1□□□□□ -0.47
DDX41-217ENST00000515562 VSIG2Q96IQ7 327 aa12.1□□□□□ -0.47
DDX41-217ENST00000515562 TP53TG3Q9ULZ0 132 aa12.1□□□□□ -0.47
DDX41-217ENST00000515562 A0A096LPF7 62 aa12.09□□□□□ -0.47
DDX41-217ENST00000515562 FAM74A1Q5RGS3 127 aa12.09□□□□□ -0.47
DDX41-217ENST00000515562 TMED6Q8WW62 240 aa12.09□□□□□ -0.47
DDX41-217ENST00000515562 MRPL16Q9NX20 251 aaKnown RBP12.09□□□□□ -0.47
DDX41-217ENST00000515562 DIRC3C9JPN6 131 aa12.08□□□□□ -0.48
DDX41-217ENST00000515562 BTF3P20290 206 aaKnown RBP12.08□□□□□ -0.48
DDX41-217ENST00000515562 ACOT6Q3I5F7 207 aaPredicted RBP12.08□□□□□ -0.48
DDX41-217ENST00000515562 PQLC2Q6ZP29 291 aa12.08□□□□□ -0.48
DDX41-217ENST00000515562 Q6ZQT7 251 aa12.08□□□□□ -0.48
DDX41-217ENST00000515562 CMTM2Q8TAZ6 248 aa12.08□□□□□ -0.48
DDX41-217ENST00000515562 OTORQ9NRC9 128 aa12.08□□□□□ -0.48
DDX41-217ENST00000515562 MUC4Q99102 2169 aa12.08□□□□□ -0.48
DDX41-217ENST00000515562 A0A1W2PPV4 95 aa12.07□□□□□ -0.48
DDX41-217ENST00000515562 PAX4O43316 350 aa12.07□□□□□ -0.48
DDX41-217ENST00000515562 SLAQ13239 276 aa12.07□□□□□ -0.48
DDX41-217ENST00000515562 Q6AWC8 147 aa12.07□□□□□ -0.48
DDX41-217ENST00000515562 KRTAP1-5Q9BYS1 174 aa12.07□□□□□ -0.48
DDX41-217ENST00000515562 BATF3Q9NR55 127 aa12.07□□□□□ -0.48
DDX41-217ENST00000515562 PRO0255Q9UI72 69 aa12.07□□□□□ -0.48
DDX41-217ENST00000515562 ICOSQ9Y6W8 199 aa12.07□□□□□ -0.48
DDX41-217ENST00000515562 C16orf90A8MZG2 172 aa12.06□□□□□ -0.48
DDX41-217ENST00000515562 MUC21Q5SSG8 566 aa12.06□□□□□ -0.48
DDX41-217ENST00000515562 FAM159AQ6UWV7 190 aa12.06□□□□□ -0.48
DDX41-217ENST00000515562 ARL6IP6Q8N6S5 226 aa12.06□□□□□ -0.48
DDX41-217ENST00000515562 HYLS1Q96M11 299 aa12.06□□□□□ -0.48
DDX41-217ENST00000515562 WFDC1Q9HC57 220 aa12.06□□□□□ -0.48
DDX41-217ENST00000515562 TRGV11A0A075B6L2 103 aa12.05□□□□□ -0.48
DDX41-217ENST00000515562 IGHV3-53P01767 116 aa12.05□□□□□ -0.48
DDX41-217ENST00000515562 PGPA6NDG6 321 aa12.04□□□□□ -0.48
DDX41-217ENST00000515562 RAB2AP61019 212 aa12.04□□□□□ -0.48
DDX41-217ENST00000515562 TMEM183BQ1AE95 376 aa12.04□□□□□ -0.48
DDX41-217ENST00000515562 TMEM183AQ8IXX5 376 aa12.04□□□□□ -0.48
DDX41-217ENST00000515562 SPXQ9BT56 116 aa12.04□□□□□ -0.48
DDX41-217ENST00000515562 RPH3ALQ9UNE2 315 aa12.04□□□□□ -0.48
DDX41-217ENST00000515562 HHLA3Q9XRX5 114 aa12.04□□□□□ -0.48
DDX41-217ENST00000515562 ALG5Q9Y673 324 aa12.04□□□□□ -0.48
DDX41-217ENST00000515562 EIF3GO75821 320 aaKnown RBP eCLIP12.03□□□□□ -0.48
DDX41-217ENST00000515562 PTTG1O95997 202 aa12.03□□□□□ -0.48
DDX41-217ENST00000515562 CRYBA4P53673 196 aa12.03□□□□□ -0.48
DDX41-217ENST00000515562 TDRG1Q3Y452 100 aa12.03□□□□□ -0.48
DDX41-217ENST00000515562 GOLT1AQ6ZVE7 132 aa12.03□□□□□ -0.48
DDX41-217ENST00000515562 OR10G4Q8NGN3 311 aa12.03□□□□□ -0.48
DDX41-217ENST00000515562 OR10G9Q8NGN4 311 aa12.03□□□□□ -0.48
DDX41-217ENST00000515562 OR10G7Q8NGN6 311 aa12.03□□□□□ -0.48
DDX41-217ENST00000515562 MDFICQ9P1T7 246 aa12.03□□□□□ -0.48
DDX41-217ENST00000515562 RYR1P21817 5038 aa12.03□□□□□ -0.48
DDX41-217ENST00000515562 SIVA1O15304 175 aa12.02□□□□□ -0.49
DDX41-217ENST00000515562 FHL2Q14192 279 aa12.02□□□□□ -0.49
DDX41-217ENST00000515562 MRPL23Q16540 153 aaKnown RBP12.02□□□□□ -0.49
DDX41-217ENST00000515562 OR2G3Q8NGZ4 309 aa12.02□□□□□ -0.49
DDX41-217ENST00000515562 RASL10AQ92737 203 aa12.02□□□□□ -0.49
DDX41-217ENST00000515562 C8orf49Q96NF6 230 aa12.02□□□□□ -0.49
DDX41-217ENST00000515562 NAGKQ9UJ70 344 aa12.02□□□□□ -0.49
DDX41-217ENST00000515562 TRAV21A0A0B4J279 112 aa12.01□□□□□ -0.49
DDX41-217ENST00000515562 TRGV4A0A0C4DH28 118 aa12.01□□□□□ -0.49
DDX41-217ENST00000515562 CDC34P49427 236 aaPredicted RBP12.01□□□□□ -0.49
DDX41-217ENST00000515562 PSMG3Q9BT73 122 aaPredicted RBP12.01□□□□□ -0.49
DDX41-217ENST00000515562 SERTM2A0A1B0GWG4 89 aa12□□□□□ -0.49
DDX41-217ENST00000515562 HMGB3O15347 200 aaKnown RBP12□□□□□ -0.49
DDX41-217ENST00000515562 CDK2AP2O75956 126 aa12□□□□□ -0.49
DDX41-217ENST00000515562 NXPH4O95158 308 aa12□□□□□ -0.49
DDX41-217ENST00000515562 ARL14EPLP0DKL9 152 aa12□□□□□ -0.49
DDX41-217ENST00000515562 NEGR1Q7Z3B1 354 aa12□□□□□ -0.49
DDX41-217ENST00000515562 IQCF2Q8IXL9 164 aa12□□□□□ -0.49
DDX41-217ENST00000515562 HSD17B11Q8NBQ5 300 aa12□□□□□ -0.49
DDX41-217ENST00000515562 AQP10Q96PS8 301 aa12□□□□□ -0.49
DDX41-217ENST00000515562 MED28Q9H204 178 aa12□□□□□ -0.49
DDX41-217ENST00000515562 TREM1Q9NP99 234 aa12□□□□□ -0.49
DDX41-217ENST00000515562 STAG3L2P0CL84 134 aa11.99□□□□□ -0.49
DDX41-217ENST00000515562 STAG3L3P0CL85 134 aa11.99□□□□□ -0.49
DDX41-217ENST00000515562 LINC00315P59091 139 aa11.99□□□□□ -0.49
DDX41-217ENST00000515562 SPATA12Q7Z6I5 190 aa11.99□□□□□ -0.49
DDX41-217ENST00000515562 PCNPQ8WW12 178 aaKnown RBP11.99□□□□□ -0.49
DDX41-217ENST00000515562 NDFIP1Q9BT67 221 aa11.99□□□□□ -0.49
DDX41-217ENST00000515562 TRAV8-1A0A0A6YYK1 113 aa11.98□□□□□ -0.49
DDX41-217ENST00000515562 F6UZH7 168 aa11.98□□□□□ -0.49
DDX41-217ENST00000515562 MBP02144 154 aa11.98□□□□□ -0.49
DDX41-217ENST00000515562 ORM1P02763 201 aa11.98□□□□□ -0.49
DDX41-217ENST00000515562 SFTA3P0C7M3 94 aa11.98□□□□□ -0.49
DDX41-217ENST00000515562 SRIP30626 198 aa11.98□□□□□ -0.49
DDX41-217ENST00000515562 GNG5P63218 68 aa11.98□□□□□ -0.49
DDX41-217ENST00000515562 C5orf17Q8NAS9 161 aa11.98□□□□□ -0.49
DDX41-217ENST00000515562 ASB13Q8WXK3 278 aa11.98□□□□□ -0.49
DDX41-217ENST00000515562 ZNF479Q96JC4 524 aa11.98□□□□□ -0.49
DDX41-217ENST00000515562 KCNS1Q96KK3 526 aa11.98□□□□□ -0.49
DDX41-217ENST00000515562 SDF2L1Q9HCN8 221 aa11.98□□□□□ -0.49
DDX41-217ENST00000515562 TRAV4A0A0B4J268 109 aa11.97□□□□□ -0.49
DDX41-217ENST00000515562 IGHV3-16A0A0C4DH30 117 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms