RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 KLF17Q5JT82 389 aaPredicted RBP4.27□□□□□ -1.73
NUP54-218ENST00000515460 LCN12Q6JVE5 192 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 EBLN2Q6P2I7 272 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 Q6ZT83 130 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 GOLT1AQ6ZVE7 132 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 MOB3BQ86TA1 216 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 TEN1Q86WV5 123 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 GAPTQ8N292 157 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 C10orf126Q8N4M7 172 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 C3orf22Q8N5N4 141 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 GATD1Q8NB37 220 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 NEXN-AS1Q8NBZ9 246 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 PLEKHB2Q96CS7 222 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 LINC00526Q96FQ7 95 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 LINC00479Q96M42 142 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 IMUPQ9GZP8 106 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 C11orf1Q9H5F2 150 aa4.27□□□□□ -1.73
NUP54-218ENST00000515460 TECRQ9NZ01 308 aaKnown RBP4.27□□□□□ -1.73
NUP54-218ENST00000515460 IGHV1-24A0A0C4DH33 117 aa4.26□□□□□ -1.73
NUP54-218ENST00000515460 TEX50A0A1B0GTY4 177 aa4.26□□□□□ -1.73
NUP54-218ENST00000515460 CRYM-AS1A6NIL9 109 aa4.26□□□□□ -1.73
NUP54-218ENST00000515460 TIMM23O14925 209 aa4.26□□□□□ -1.73
NUP54-218ENST00000515460 CHST1O43916 411 aa4.26□□□□□ -1.73
NUP54-218ENST00000515460 DPM2O94777 84 aa4.26□□□□□ -1.73
NUP54-218ENST00000515460 HMGN2P05204 90 aaKnown RBP4.26□□□□□ -1.73
NUP54-218ENST00000515460 CECR9P0C854 216 aa4.26□□□□□ -1.73
NUP54-218ENST00000515460 BCL3P20749 454 aa4.26□□□□□ -1.73
NUP54-218ENST00000515460 TCF23Q7RTU1 214 aa4.26□□□□□ -1.73
NUP54-218ENST00000515460 SH2D6Q7Z4S9 175 aa4.26□□□□□ -1.73
NUP54-218ENST00000515460 ZNF525Q8N782 197 aa4.26□□□□□ -1.73
NUP54-218ENST00000515460 WDR31Q8NA23 367 aa4.26□□□□□ -1.73
NUP54-218ENST00000515460 GJC3Q8NFK1 279 aa4.26□□□□□ -1.73
NUP54-218ENST00000515460 C10orf105Q8TEF2 133 aa4.26□□□□□ -1.73
NUP54-218ENST00000515460 H1FXQ92522 213 aaKnown RBP4.26□□□□□ -1.73
NUP54-218ENST00000515460 PDCD1LG2Q9BQ51 273 aa4.26□□□□□ -1.73
NUP54-218ENST00000515460 SLC25A39Q9BZJ4 359 aaPredicted RBP4.26□□□□□ -1.73
NUP54-218ENST00000515460 FBXL15Q9H469 300 aa4.26□□□□□ -1.73
NUP54-218ENST00000515460 EDA2RQ9HAV5 297 aa4.26□□□□□ -1.73
NUP54-218ENST00000515460 C21orf62Q9NYP8 219 aa4.26□□□□□ -1.73
NUP54-218ENST00000515460 RCL1Q9Y2P8 373 aaKnown RBP4.26□□□□□ -1.73
NUP54-218ENST00000515460 SLC25A15Q9Y619 301 aa4.26□□□□□ -1.73
NUP54-218ENST00000515460 RAI1Q7Z5J4 1906 aaPredicted RBP4.26□□□□□ -1.73
NUP54-218ENST00000515460 DOCK7Q96N67 2140 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 LOC107984640A0A0U1RRK4 108 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 C3orf85A0A1B0GTC6 90 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 CTXND1A0A1B0GTU2 59 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 F2Z2F3 143 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 LMX1BO60663 402 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 LY6HO94772 140 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 NUDT14O95848 222 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 IGHV3-9P01782 118 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 IGHMP01871 453 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 FGF6P10767 208 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 HLA-DRB4P13762 266 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 SLC25A16P16260 332 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 COX5AP20674 150 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 TMEM50BP56557 158 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 RRN3P1Q2M238 152 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 C1orf100Q5SVJ3 147 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 LINC01545Q5VT33 79 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 CFAP126Q5VTH2 177 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 ZNF841Q6ZN19 808 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 TRPT1Q86TN4 253 aaKnown RBP4.25□□□□□ -1.73
NUP54-218ENST00000515460 FGFRL1Q8N441 504 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 NUP35Q8NFH5 326 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 OR52N5Q8NH56 324 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 PIFOQ8TCI5 191 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 DLX4Q92988 240 aaPredicted RBP4.25□□□□□ -1.73
NUP54-218ENST00000515460 TIMD4Q96H15 378 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 LINC00477Q96M19 166 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 TMEM147Q9BVK8 224 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 PBOV1Q9GZY1 135 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 ZNF286AQ9HBT8 521 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 KCNIP2Q9NS61 270 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 HLA-DRB4X5D2U9 266 aa4.25□□□□□ -1.73
NUP54-218ENST00000515460 NUP214P35658 2090 aaPredicted RBP4.25□□□□□ -1.73
NUP54-218ENST00000515460 TRBV20-1A0A075B6N2 111 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 IGKV3D-15A0A087WSY6 115 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 TMED7-TICAM2A0A0A6YYA0 188 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 TRBV7-7A0A0K0K1E9 115 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 hDV102S1A0JD36 115 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 IGLL5B9A064 214 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 C9JCJ5 164 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 BMPR1BO00238 502 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 NDUFC2O95298 119 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 RENP00797 406 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 RBP4P02753 201 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 IGHV4-30-4P0DP06 118 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 CRYGAP11844 174 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 RPL35AP18077 110 aaKnown RBP4.24□□□□□ -1.73
NUP54-218ENST00000515460 IER3P46695 156 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 EFNA4P52798 201 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 UNC119Q13432 240 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 C4orf26Q17RF5 130 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 FAM120AOSQ5T036 256 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 Q6P435 159 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 PQLC2Q6ZP29 291 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 SBSPONQ8IVN8 264 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 TMEM252Q8N6L7 170 aa4.24□□□□□ -1.73
NUP54-218ENST00000515460 OR5C1Q8NGR4 320 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms