RNA–Protein interactions for RNA: ENST00000514335.1

NIPBL-208, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 2,948 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-208ENST00000514335 NPYP01303 97 aa5.47□□□□□ -1.53
NIPBL-208ENST00000514335 SLC50A1Q9BRV3 221 aa5.47□□□□□ -1.53
NIPBL-208ENST00000514335 MED14OSP0DP75 135 aa5.47□□□□□ -1.53
NIPBL-208ENST00000514335 CRIP2P52943 208 aaPredicted RBP5.47□□□□□ -1.53
NIPBL-208ENST00000514335 GNB1P62873 340 aa5.47□□□□□ -1.53
NIPBL-208ENST00000514335 SCGB1D4Q6XE38 83 aa5.47□□□□□ -1.53
NIPBL-208ENST00000514335 MDP1Q86V88 176 aa5.47□□□□□ -1.53
NIPBL-208ENST00000514335 LINC00337Q8N6G1 96 aa5.47□□□□□ -1.53
NIPBL-208ENST00000514335 TRGV9Q99603 122 aa5.47□□□□□ -1.53
NIPBL-208ENST00000514335 SLC25A15Q9Y619 301 aa5.47□□□□□ -1.53
NIPBL-208ENST00000514335 USP34Q70CQ2 3546 aa5.47□□□□□ -1.53
NIPBL-208ENST00000514335 SETXQ7Z333 2677 aaKnown RBP5.47□□□□□ -1.53
NIPBL-208ENST00000514335 CYSRT1A8MQ03 144 aa5.47□□□□□ -1.53
NIPBL-208ENST00000514335 DYNLT3P51808 116 aa5.47□□□□□ -1.53
NIPBL-208ENST00000514335 DEFB127Q9H1M4 99 aa5.47□□□□□ -1.53
NIPBL-208ENST00000514335 LINC00588Q9Y4M8 146 aa5.47□□□□□ -1.53
NIPBL-208ENST00000514335 TIMM8BQ9Y5J9 83 aaPredicted RBP5.47□□□□□ -1.53
NIPBL-208ENST00000514335 UNC79Q9P2D8 2635 aa5.46□□□□□ -1.53
NIPBL-208ENST00000514335 CRYM-AS1A6NIL9 109 aa5.46□□□□□ -1.54
NIPBL-208ENST00000514335 C16orf47Q6ZP98 133 aaPredicted RBP5.46□□□□□ -1.54
NIPBL-208ENST00000514335 WFDC5Q8TCV5 224 aa5.46□□□□□ -1.54
NIPBL-208ENST00000514335 CHCHD1Q96BP2 118 aaKnown RBP5.46□□□□□ -1.54
NIPBL-208ENST00000514335 ESM1Q9NQ30 184 aa5.46□□□□□ -1.54
NIPBL-208ENST00000514335 CTSZQ9UBR2 303 aa5.46□□□□□ -1.54
NIPBL-208ENST00000514335 CPAMD8Q8IZJ3 1885 aa5.46□□□□□ -1.54
NIPBL-208ENST00000514335 LINC01549A6NIU2 74 aa5.46□□□□□ -1.54
NIPBL-208ENST00000514335 NANOS3P60323 173 aaKnown RBP5.46□□□□□ -1.54
NIPBL-208ENST00000514335 ZNF117Q03924 483 aa5.46□□□□□ -1.54
NIPBL-208ENST00000514335 ZNF524Q96C55 264 aa5.46□□□□□ -1.54
NIPBL-208ENST00000514335 LYZL4Q96KX0 146 aa5.46□□□□□ -1.54
NIPBL-208ENST00000514335 BPESC1Q9GZL8 116 aa5.46□□□□□ -1.54
NIPBL-208ENST00000514335 CEP192Q8TEP8 1941 aa5.45□□□□□ -1.54
NIPBL-208ENST00000514335 LINC00313P59037 77 aa5.45□□□□□ -1.54
NIPBL-208ENST00000514335 RPL18Q07020 188 aaKnown RBP5.45□□□□□ -1.54
NIPBL-208ENST00000514335 KISS1Q15726 138 aa5.45□□□□□ -1.54
NIPBL-208ENST00000514335 FAM104BQ5XKR9 115 aa5.45□□□□□ -1.54
NIPBL-208ENST00000514335 TAF15Q92804 592 aaKnown RBP eCLIP5.45□□□□□ -1.54
NIPBL-208ENST00000514335 ZNF492Q9P255 531 aa5.45□□□□□ -1.54
NIPBL-208ENST00000514335 IL36RNQ9UBH0 155 aa5.45□□□□□ -1.54
NIPBL-208ENST00000514335 V9GYV3 84 aa5.45□□□□□ -1.54
NIPBL-208ENST00000514335 CEP250Q9BV73 2442 aa5.45□□□□□ -1.54
NIPBL-208ENST00000514335 CABIN1Q9Y6J0 2220 aa5.45□□□□□ -1.54
NIPBL-208ENST00000514335 ANKRD11Q6UB99 2663 aaPredicted RBP5.45□□□□□ -1.54
NIPBL-208ENST00000514335 C11orf94C9JXX5 98 aa5.45□□□□□ -1.54
NIPBL-208ENST00000514335 H3BMM0 161 aa5.45□□□□□ -1.54
NIPBL-208ENST00000514335 GHRHP01286 108 aa5.45□□□□□ -1.54
NIPBL-208ENST00000514335 PPYP01298 95 aa5.45□□□□□ -1.54
NIPBL-208ENST00000514335 Q6P435 159 aa5.45□□□□□ -1.54
NIPBL-208ENST00000514335 Q8N8P6 123 aa5.45□□□□□ -1.54
NIPBL-208ENST00000514335 SMCR5Q8TEV8 140 aa5.45□□□□□ -1.54
NIPBL-208ENST00000514335 UBE2WQ96B02 151 aa5.45□□□□□ -1.54
NIPBL-208ENST00000514335 VSIG2Q96IQ7 327 aa5.45□□□□□ -1.54
NIPBL-208ENST00000514335 NABP2Q9BQ15 211 aa5.45□□□□□ -1.54
NIPBL-208ENST00000514335 PLXNA2O75051 1894 aa5.45□□□□□ -1.54
NIPBL-208ENST00000514335 IGKV2D-26A0A0A0MRZ7 120 aa5.44□□□□□ -1.54
NIPBL-208ENST00000514335 TRBV27A0A0K0K1C4 114 aa5.44□□□□□ -1.54
NIPBL-208ENST00000514335 LOC105378220A0A1B0GUY1 285 aaPredicted RBP5.44□□□□□ -1.54
NIPBL-208ENST00000514335 PRB4P10163 310 aaPredicted RBP5.44□□□□□ -1.54
NIPBL-208ENST00000514335 FCER1GP30273 86 aa5.44□□□□□ -1.54
NIPBL-208ENST00000514335 SOSTDC1Q6X4U4 206 aa5.44□□□□□ -1.54
NIPBL-208ENST00000514335 ZNF714Q96N38 554 aa5.44□□□□□ -1.54
NIPBL-208ENST00000514335 ZNF747Q9BV97 191 aa5.44□□□□□ -1.54
NIPBL-208ENST00000514335 ZFHX3Q15911 3703 aa5.44□□□□□ -1.54
NIPBL-208ENST00000514335 FER1L5A0AVI2 2057 aa5.44□□□□□ -1.54
NIPBL-208ENST00000514335 ADAMTS9Q9P2N4 1935 aa5.44□□□□□ -1.54
NIPBL-208ENST00000514335 NDUFS5O43920 106 aa5.44□□□□□ -1.54
NIPBL-208ENST00000514335 PEBP1P30086 187 aaKnown RBP5.44□□□□□ -1.54
NIPBL-208ENST00000514335 ZNF292O60281 2723 aa5.44□□□□□ -1.54
NIPBL-208ENST00000514335 DCHS1Q96JQ0 3298 aa5.44□□□□□ -1.54
NIPBL-208ENST00000514335 REV3LO60673 3130 aa5.44□□□□□ -1.54
NIPBL-208ENST00000514335 OTOGLQ3ZCN5 2332 aa5.44□□□□□ -1.54
NIPBL-208ENST00000514335 LRRK1Q38SD2 2015 aa5.44□□□□□ -1.54
NIPBL-208ENST00000514335 IQCF6A8MYZ5 107 aa5.44□□□□□ -1.54
NIPBL-208ENST00000514335 CISD3P0C7P0 127 aa5.44□□□□□ -1.54
NIPBL-208ENST00000514335 ODF3L1Q8IXM7 274 aa5.44□□□□□ -1.54
NIPBL-208ENST00000514335 CLECL1Q8IZS7 167 aa5.44□□□□□ -1.54
NIPBL-208ENST00000514335 FAM3DQ96BQ1 224 aa5.44□□□□□ -1.54
NIPBL-208ENST00000514335 C19orf73Q9NVV2 129 aa5.44□□□□□ -1.54
NIPBL-208ENST00000514335 CHD7Q9P2D1 2997 aa5.43□□□□□ -1.54
NIPBL-208ENST00000514335 EP300Q09472 2414 aaPredicted RBP5.43□□□□□ -1.54
NIPBL-208ENST00000514335 TRAV8-3A0A0A6YYJ7 113 aa5.43□□□□□ -1.54
NIPBL-208ENST00000514335 CPSF4LA6NMK7 179 aaKnown RBP5.43□□□□□ -1.54
NIPBL-208ENST00000514335 PEX7O00628 323 aa5.43□□□□□ -1.54
NIPBL-208ENST00000514335 LINC00643Q86TS7 51 aa5.43□□□□□ -1.54
NIPBL-208ENST00000514335 MARCH3Q86UD3 253 aa5.43□□□□□ -1.54
NIPBL-208ENST00000514335 ZNF491Q8N8L2 437 aa5.43□□□□□ -1.54
NIPBL-208ENST00000514335 LINC01600Q96MT4 127 aa5.43□□□□□ -1.54
NIPBL-208ENST00000514335 HIST1H4GQ99525 98 aa5.43□□□□□ -1.54
NIPBL-208ENST00000514335 A0A0A6YYD4 124 aa5.43□□□□□ -1.54
NIPBL-208ENST00000514335 H7BZZ5 65 aa5.43□□□□□ -1.54
NIPBL-208ENST00000514335 VN1R4Q7Z5H5 301 aa5.43□□□□□ -1.54
NIPBL-208ENST00000514335 C11orf1Q9H5F2 150 aa5.43□□□□□ -1.54
NIPBL-208ENST00000514335 TRBV7-1A0A0A6YYK4 115 aa5.42□□□□□ -1.54
NIPBL-208ENST00000514335 NDUFB3O43676 98 aa5.42□□□□□ -1.54
NIPBL-208ENST00000514335 CA6P23280 308 aa5.42□□□□□ -1.54
NIPBL-208ENST00000514335 FAM229BQ4G0N7 80 aa5.42□□□□□ -1.54
NIPBL-208ENST00000514335 TMEM170BQ5T4T1 132 aa5.42□□□□□ -1.54
NIPBL-208ENST00000514335 CLEC19AQ6UXS0 136 aa5.42□□□□□ -1.54
NIPBL-208ENST00000514335 PDPNQ86YL7 162 aa5.42□□□□□ -1.54
NIPBL-208ENST00000514335 COPS9Q8WXC6 57 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms