RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 CCDC28AQ8IWP9 274 aa6.82□□□□□ -1.32
RNF4-221ENST00000513643 EIF4E3Q8N5X7 224 aaKnown RBP6.82□□□□□ -1.32
RNF4-221ENST00000513643 Q8TAT8 98 aa6.82□□□□□ -1.32
RNF4-221ENST00000513643 TMEM167BQ9NRX6 74 aa6.82□□□□□ -1.32
RNF4-221ENST00000513643 IGHV1OR15-1A0A075B7D0 117 aa6.81□□□□□ -1.32
RNF4-221ENST00000513643 CTXND1A0A1B0GTU2 59 aa6.81□□□□□ -1.32
RNF4-221ENST00000513643 SERTM2A0A1B0GWG4 89 aa6.81□□□□□ -1.32
RNF4-221ENST00000513643 A0A1W2PRE2 83 aa6.81□□□□□ -1.32
RNF4-221ENST00000513643 GGTLC3B5MD39 225 aa6.81□□□□□ -1.32
RNF4-221ENST00000513643 SPINK4O60575 86 aa6.81□□□□□ -1.32
RNF4-221ENST00000513643 TCRAP04437 139 aa6.81□□□□□ -1.32
RNF4-221ENST00000513643 DEFB130BP0DP73 79 aa6.81□□□□□ -1.32
RNF4-221ENST00000513643 DEFB130AP0DP74 79 aa6.81□□□□□ -1.32
RNF4-221ENST00000513643 FAM74A1Q5RGS3 127 aa6.81□□□□□ -1.32
RNF4-221ENST00000513643 TMEM88Q6PEY1 159 aa6.81□□□□□ -1.32
RNF4-221ENST00000513643 ZNF680Q8NEM1 530 aa6.81□□□□□ -1.32
RNF4-221ENST00000513643 PKHD1P08F94 4074 aa6.81□□□□□ -1.32
RNF4-221ENST00000513643 PKD1P98161 4303 aa6.8□□□□□ -1.32
RNF4-221ENST00000513643 TRAV8-1A0A0A6YYK1 113 aa6.8□□□□□ -1.32
RNF4-221ENST00000513643 A0A0D9SG52 128 aa6.8□□□□□ -1.32
RNF4-221ENST00000513643 ATP5G1P05496 136 aa6.8□□□□□ -1.32
RNF4-221ENST00000513643 SEC11BP0C7V7 166 aa6.8□□□□□ -1.32
RNF4-221ENST00000513643 ATP5G3P48201 142 aa6.8□□□□□ -1.32
RNF4-221ENST00000513643 TCL1AP56279 114 aa6.8□□□□□ -1.32
RNF4-221ENST00000513643 GOLT1AQ6ZVE7 132 aa6.8□□□□□ -1.32
RNF4-221ENST00000513643 POM121L12Q8N7R1 296 aa6.8□□□□□ -1.32
RNF4-221ENST00000513643 C5orf17Q8NAS9 161 aa6.8□□□□□ -1.32
RNF4-221ENST00000513643 CMTM2Q8TAZ6 248 aa6.8□□□□□ -1.32
RNF4-221ENST00000513643 HYLS1Q96M11 299 aa6.8□□□□□ -1.32
RNF4-221ENST00000513643 MUC4Q99102 2169 aa6.8□□□□□ -1.32
RNF4-221ENST00000513643 ARPC5LQ9BPX5 153 aa6.8□□□□□ -1.32
RNF4-221ENST00000513643 GSN-AS1Q9NRJ2 163 aa6.8□□□□□ -1.32
RNF4-221ENST00000513643 EPDR1Q9UM22 224 aa6.8□□□□□ -1.32
RNF4-221ENST00000513643 KLF12Q9Y4X4 402 aa6.8□□□□□ -1.32
RNF4-221ENST00000513643 H3BNG1 76 aa6.79□□□□□ -1.32
RNF4-221ENST00000513643 P0DMU3 169 aa6.79□□□□□ -1.32
RNF4-221ENST00000513643 FAM231AP0DMU4 169 aa6.79□□□□□ -1.32
RNF4-221ENST00000513643 FAM231CP0DMU5 169 aa6.79□□□□□ -1.32
RNF4-221ENST00000513643 HOXA5P20719 270 aa6.79□□□□□ -1.32
RNF4-221ENST00000513643 SUMO1P63165 101 aaKnown RBP6.79□□□□□ -1.32
RNF4-221ENST00000513643 GNG5P63218 68 aa6.79□□□□□ -1.32
RNF4-221ENST00000513643 LGALS9BQ3B8N2 356 aa6.79□□□□□ -1.32
RNF4-221ENST00000513643 RNF212Q495C1 297 aa6.79□□□□□ -1.32
RNF4-221ENST00000513643 Q6ZTI0 123 aa6.79□□□□□ -1.32
RNF4-221ENST00000513643 TCTE3Q8IZS6 198 aa6.79□□□□□ -1.32
RNF4-221ENST00000513643 C15orf53Q8NAA6 179 aa6.79□□□□□ -1.32
RNF4-221ENST00000513643 MBD3L1Q8WWY6 194 aa6.79□□□□□ -1.32
RNF4-221ENST00000513643 TMPRSS5Q9H3S3 457 aa6.79□□□□□ -1.32
RNF4-221ENST00000513643 SNURFLB1AK76 121 aa6.78□□□□□ -1.32
RNF4-221ENST00000513643 BCL2L11O43521 198 aa6.78□□□□□ -1.32
RNF4-221ENST00000513643 HTN3P15516 51 aa6.78□□□□□ -1.32
RNF4-221ENST00000513643 FHITP49789 147 aa6.78□□□□□ -1.32
RNF4-221ENST00000513643 AKR1C8PQ5T2L2 129 aa6.78□□□□□ -1.32
RNF4-221ENST00000513643 COX8CQ7Z4L0 72 aa6.78□□□□□ -1.32
RNF4-221ENST00000513643 STOML3Q8TAV4 291 aa6.78□□□□□ -1.32
RNF4-221ENST00000513643 RASL10AQ92737 203 aa6.78□□□□□ -1.32
RNF4-221ENST00000513643 NKX6-2Q9C056 277 aaPredicted RBP6.78□□□□□ -1.32
RNF4-221ENST00000513643 MDFICQ9P1T7 246 aa6.78□□□□□ -1.32
RNF4-221ENST00000513643 GAGE12BA1L429 117 aa6.77□□□□□ -1.33
RNF4-221ENST00000513643 FBLL1A6NHQ2 334 aaKnown RBP6.77□□□□□ -1.33
RNF4-221ENST00000513643 FAM74A7A6NL05 159 aa6.77□□□□□ -1.33
RNF4-221ENST00000513643 UMAD1C9J7I0 102 aa6.77□□□□□ -1.33
RNF4-221ENST00000513643 F5H768 121 aa6.77□□□□□ -1.33
RNF4-221ENST00000513643 RGS13O14921 159 aa6.77□□□□□ -1.33
RNF4-221ENST00000513643 GAGE7O76087 117 aa6.77□□□□□ -1.33
RNF4-221ENST00000513643 GAGE12FP0CL80 117 aa6.77□□□□□ -1.33
RNF4-221ENST00000513643 GAGE12GP0CL81 117 aa6.77□□□□□ -1.33
RNF4-221ENST00000513643 GAGE12IP0CL82 117 aa6.77□□□□□ -1.33
RNF4-221ENST00000513643 ZNF80P51504 273 aaPredicted RBP6.77□□□□□ -1.33
RNF4-221ENST00000513643 LGALSLQ3ZCW2 172 aaPredicted RBP6.77□□□□□ -1.33
RNF4-221ENST00000513643 Q6ZR54 194 aa6.77□□□□□ -1.33
RNF4-221ENST00000513643 TMUB2Q71RG4 321 aa6.77□□□□□ -1.33
RNF4-221ENST00000513643 CYB561D1Q8N8Q1 229 aa6.77□□□□□ -1.33
RNF4-221ENST00000513643 TMEM75Q8N9X5 138 aa6.77□□□□□ -1.33
RNF4-221ENST00000513643 ATG101Q9BSB4 218 aa6.77□□□□□ -1.33
RNF4-221ENST00000513643 TREM1Q9NP99 234 aa6.77□□□□□ -1.33
RNF4-221ENST00000513643 C11orf21Q9P2W6 132 aa6.77□□□□□ -1.33
RNF4-221ENST00000513643 PSG8Q9UQ74 426 aa6.77□□□□□ -1.33
RNF4-221ENST00000513643 ARL2-SNX15V9GYD0 113 aa6.77□□□□□ -1.33
RNF4-221ENST00000513643 TRAV21A0A0B4J279 112 aa6.76□□□□□ -1.33
RNF4-221ENST00000513643 IGHV3-16A0A0C4DH30 117 aa6.76□□□□□ -1.33
RNF4-221ENST00000513643 MAP1LC3B2A6NCE7 125 aa6.76□□□□□ -1.33
RNF4-221ENST00000513643 FGF8P55075 233 aaPredicted RBP6.76□□□□□ -1.33
RNF4-221ENST00000513643 FAM3BP58499 235 aaPredicted RBP6.76□□□□□ -1.33
RNF4-221ENST00000513643 FLI1Q01543 452 aaPredicted RBP6.76□□□□□ -1.33
RNF4-221ENST00000513643 DPPA3Q6W0C5 159 aa6.76□□□□□ -1.33
RNF4-221ENST00000513643 ZNF575Q86XF7 245 aa6.76□□□□□ -1.33
RNF4-221ENST00000513643 VSIG2Q96IQ7 327 aa6.76□□□□□ -1.33
RNF4-221ENST00000513643 SGK494Q96LW2 274 aa6.76□□□□□ -1.33
RNF4-221ENST00000513643 LINC00479Q96M42 142 aa6.76□□□□□ -1.33
RNF4-221ENST00000513643 MAP1LC3BQ9GZQ8 125 aa6.76□□□□□ -1.33
RNF4-221ENST00000513643 TRBV6-1A0A0K0K1D8 114 aa6.75□□□□□ -1.33
RNF4-221ENST00000513643 GNRH2O43555 120 aa6.75□□□□□ -1.33
RNF4-221ENST00000513643 C1QBP02746 253 aa6.75□□□□□ -1.33
RNF4-221ENST00000513643 MUC21Q5SSG8 566 aa6.75□□□□□ -1.33
RNF4-221ENST00000513643 IQCF2Q8IXL9 164 aa6.75□□□□□ -1.33
RNF4-221ENST00000513643 HIST1H2BAQ96A08 127 aa6.75□□□□□ -1.33
RNF4-221ENST00000513643 C8orf49Q96NF6 230 aa6.75□□□□□ -1.33
RNF4-221ENST00000513643 TCEAL7Q9BRU2 100 aa6.75□□□□□ -1.33
RNF4-221ENST00000513643 SPXQ9BT56 116 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms