RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 NLRC5Q86WI3 1866 aa2.82□□□□□ -1.96
USP53-205ENST00000509769 IGHV1OR15-1A0A075B7D0 117 aa2.82□□□□□ -1.96
USP53-205ENST00000509769 IGKV3D-15A0A087WSY6 115 aa2.82□□□□□ -1.96
USP53-205ENST00000509769 TMEM89A2RUT3 159 aa2.82□□□□□ -1.96
USP53-205ENST00000509769 CLPSL1A2RUU4 121 aa2.82□□□□□ -1.96
USP53-205ENST00000509769 TEX22C9J3V5 150 aa2.82□□□□□ -1.96
USP53-205ENST00000509769 ETV2O00321 342 aaPredicted RBP2.82□□□□□ -1.96
USP53-205ENST00000509769 PRYO14603 147 aa2.82□□□□□ -1.96
USP53-205ENST00000509769 IGKV3-15P01624 115 aa2.82□□□□□ -1.96
USP53-205ENST00000509769 CISD3P0C7P0 127 aa2.82□□□□□ -1.96
USP53-205ENST00000509769 GNLYP22749 145 aa2.82□□□□□ -1.96
USP53-205ENST00000509769 RPL28P46779 137 aaKnown RBP2.82□□□□□ -1.96
USP53-205ENST00000509769 UFSP1Q6NVU6 142 aa2.82□□□□□ -1.96
USP53-205ENST00000509769 DAZ4Q86SG3 579 aaKnown RBP2.82□□□□□ -1.96
USP53-205ENST00000509769 PAQR4Q8N4S7 273 aaPredicted RBP2.82□□□□□ -1.96
USP53-205ENST00000509769 KLF14Q8TD94 323 aaPredicted RBP2.82□□□□□ -1.96
USP53-205ENST00000509769 ITLN1Q8WWA0 313 aa2.82□□□□□ -1.96
USP53-205ENST00000509769 DAZ3Q9NR90 486 aaKnown RBP2.82□□□□□ -1.96
USP53-205ENST00000509769 DEPPQ9NTK1 212 aa2.82□□□□□ -1.96
USP53-205ENST00000509769 TSC2P49815 1807 aa2.82□□□□□ -1.96
USP53-205ENST00000509769 TECTAO75443 2155 aa2.82□□□□□ -1.96
USP53-205ENST00000509769 MYO10Q9HD67 2058 aa2.82□□□□□ -1.96
USP53-205ENST00000509769 C8orf87E5RJ46 101 aa2.82□□□□□ -1.96
USP53-205ENST00000509769 GATA1P15976 413 aaPredicted RBP2.82□□□□□ -1.96
USP53-205ENST00000509769 SPINK2P20155 84 aa2.82□□□□□ -1.96
USP53-205ENST00000509769 C3orf36Q3SXR2 165 aa2.82□□□□□ -1.96
USP53-205ENST00000509769 BAZ2BQ9UIF8 2168 aaKnown RBP2.82□□□□□ -1.96
USP53-205ENST00000509769 IGHV3-64A0A075B6Q5 118 aa2.82□□□□□ -1.96
USP53-205ENST00000509769 ETDCA0A1B0GVM5 59 aa2.82□□□□□ -1.96
USP53-205ENST00000509769 WIPF3A6NGB9 483 aa2.82□□□□□ -1.96
USP53-205ENST00000509769 IGKV1-5P01602 117 aa2.82□□□□□ -1.96
USP53-205ENST00000509769 PRM2P04554 102 aa2.82□□□□□ -1.96
USP53-205ENST00000509769 CCL11P51671 97 aa2.82□□□□□ -1.96
USP53-205ENST00000509769 ZNF134P52741 427 aa2.82□□□□□ -1.96
USP53-205ENST00000509769 LINC00311Q8N616 119 aa2.82□□□□□ -1.96
USP53-205ENST00000509769 LINC01555Q8NAE3 123 aa2.82□□□□□ -1.96
USP53-205ENST00000509769 IGHV1OR21-1A0A087WYE8 117 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 LST1O00453 97 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 DSCR9P59020 149 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 NANOS2P60321 138 aaKnown RBP2.81□□□□□ -1.96
USP53-205ENST00000509769 CDPF1Q6NVV7 123 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 PCP2Q8IVA1 136 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 C14orf178Q8N769 122 aaPredicted RBP2.81□□□□□ -1.96
USP53-205ENST00000509769 TMEM14BQ9NUH8 114 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 MBD3L5A6NJ08 208 aaPredicted RBP2.81□□□□□ -1.96
USP53-205ENST00000509769 PMS2P5A8MQ11 134 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 RPL35AP18077 110 aaKnown RBP2.81□□□□□ -1.96
USP53-205ENST00000509769 Q6ZT83 130 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 FOXL2NBQ6ZUU3 175 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 BPESC1Q9GZL8 116 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 FGF23Q9GZV9 251 aaPredicted RBP2.81□□□□□ -1.96
USP53-205ENST00000509769 SCN8AQ9UQD0 1980 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 ZDBF2Q9HCK1 2354 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 ANKRD12Q6UB98 2062 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 IGKV1D-13A0A0B4J2D9 117 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 IGHV3-20A0A0C4DH32 117 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 PRB1P04280 392 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 IGKV1-13P0DP09 117 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 PRR20EP86478 221 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 PRR20CP86479 221 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 PRR20DP86480 221 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 PRR20BP86481 221 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 PRR20AP86496 221 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 RPL39P5Q59GN2 51 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 COX7B2Q8TF08 81 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 Q9H8V8 135 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 FAM30AQ9NZY2 134 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 MIA3Q5JRA6 1907 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 IGHV3-21A0A0B4J1V1 117 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 TMEM223A0PJW6 202 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 C2orf70A6NJV1 201 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 COX7BP24311 80 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 LOXP28300 417 aaPredicted RBP2.81□□□□□ -1.96
USP53-205ENST00000509769 FGFBP3Q8TAT2 258 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 FAM110DQ8TAY7 271 aaPredicted RBP2.81□□□□□ -1.96
USP53-205ENST00000509769 IMMP1LQ96LU5 166 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 HIGD2AQ9BW72 106 aa2.81□□□□□ -1.96
USP53-205ENST00000509769 ZFC3H1O60293 1989 aaKnown RBP2.81□□□□□ -1.96
USP53-205ENST00000509769 CACNA1GO43497 2377 aa2.8□□□□□ -1.96
USP53-205ENST00000509769 BAHCC1Q9P281 2608 aa2.8□□□□□ -1.96
USP53-205ENST00000509769 FAM208BQ5VWN6 2430 aa2.8□□□□□ -1.96
USP53-205ENST00000509769 ERC2-IT1O76042 136 aa2.8□□□□□ -1.96
USP53-205ENST00000509769 COX17Q14061 63 aa2.8□□□□□ -1.96
USP53-205ENST00000509769 VOPP1Q96AW1 172 aa2.8□□□□□ -1.96
USP53-205ENST00000509769 ZNF503Q96F45 646 aa2.8□□□□□ -1.96
USP53-205ENST00000509769 PYGO1Q9Y3Y4 419 aa2.8□□□□□ -1.96
USP53-205ENST00000509769 ZNF638Q14966 1978 aaKnown RBP2.8□□□□□ -1.96
USP53-205ENST00000509769 IGKV2-40A0A087WW87 121 aaPredicted RBP2.8□□□□□ -1.96
USP53-205ENST00000509769 SRRM4A7MD48 611 aaKnown RBP2.8□□□□□ -1.96
USP53-205ENST00000509769 IGKV2D-40P01614 121 aaPredicted RBP2.8□□□□□ -1.96
USP53-205ENST00000509769 XCL1P47992 114 aa2.8□□□□□ -1.96
USP53-205ENST00000509769 XGP55808 180 aa2.8□□□□□ -1.96
USP53-205ENST00000509769 IGF2-ASQ6U949 168 aa2.8□□□□□ -1.96
USP53-205ENST00000509769 LCA10Q71F78 164 aa2.8□□□□□ -1.96
USP53-205ENST00000509769 XCL2Q9UBD3 114 aa2.8□□□□□ -1.96
USP53-205ENST00000509769 FANCMQ8IYD8 2048 aa2.8□□□□□ -1.96
USP53-205ENST00000509769 IGKV3D-20A0A0C4DH25 116 aa2.8□□□□□ -1.96
USP53-205ENST00000509769 NDUFA4O00483 81 aa2.8□□□□□ -1.96
USP53-205ENST00000509769 SPRY2O43597 315 aa2.8□□□□□ -1.96
USP53-205ENST00000509769 EBI3Q14213 229 aa2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms