RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 IGKV3-7A0A075B6H7 116 aa12.77□□□□□ -0.37
CCDC88B-210ENST00000494566 IGHV4-39P01824 125 aa12.77□□□□□ -0.37
CCDC88B-210ENST00000494566 IGHG4P01861 327 aa12.77□□□□□ -0.37
CCDC88B-210ENST00000494566 PRSS1P07477 247 aa12.77□□□□□ -0.37
CCDC88B-210ENST00000494566 GCSHP23434 173 aa12.77□□□□□ -0.37
CCDC88B-210ENST00000494566 IGKV2D-26A0A0A0MRZ7 120 aa12.76□□□□□ -0.37
CCDC88B-210ENST00000494566 KIR3DS1Q14943 382 aa12.76□□□□□ -0.37
CCDC88B-210ENST00000494566 MTURNQ8N3F0 131 aa12.76□□□□□ -0.37
CCDC88B-210ENST00000494566 FER1L6-AS1Q8NA97 138 aa12.76□□□□□ -0.37
CCDC88B-210ENST00000494566 IFI27L1Q96BM0 104 aa12.76□□□□□ -0.37
CCDC88B-210ENST00000494566 KLK15Q9H2R5 256 aa12.76□□□□□ -0.37
CCDC88B-210ENST00000494566 CENPVL3A0A0U1RRI6 287 aa12.76□□□□□ -0.37
CCDC88B-210ENST00000494566 OOSP1A8MZH6 123 aa12.76□□□□□ -0.37
CCDC88B-210ENST00000494566 RPL7P18124 248 aaKnown RBP12.76□□□□□ -0.37
CCDC88B-210ENST00000494566 LCNL1Q6ZST4 164 aa12.76□□□□□ -0.37
CCDC88B-210ENST00000494566 UFC1Q9Y3C8 167 aa12.76□□□□□ -0.37
CCDC88B-210ENST00000494566 NPFFO15130 113 aa12.75□□□□□ -0.37
CCDC88B-210ENST00000494566 CDKN1BP46527 198 aa12.75□□□□□ -0.37
CCDC88B-210ENST00000494566 GTSCR1Q86UQ5 136 aa12.75□□□□□ -0.37
CCDC88B-210ENST00000494566 PRORYQ9H606 182 aa12.75□□□□□ -0.37
CCDC88B-210ENST00000494566 USP9YO00507 2555 aaPredicted RBP12.75□□□□□ -0.37
CCDC88B-210ENST00000494566 CD5LO43866 347 aa12.75□□□□□ -0.37
CCDC88B-210ENST00000494566 LEPP41159 167 aa12.75□□□□□ -0.37
CCDC88B-210ENST00000494566 ZNF502Q8TBZ5 544 aa12.75□□□□□ -0.37
CCDC88B-210ENST00000494566 CCDC140Q96MF4 163 aa12.75□□□□□ -0.37
CCDC88B-210ENST00000494566 PRR25Q96S07 402 aa12.75□□□□□ -0.37
CCDC88B-210ENST00000494566 IL17RELQ6ZVW7 336 aa12.75□□□□□ -0.37
CCDC88B-210ENST00000494566 FGF6P10767 208 aa12.74□□□□□ -0.37
CCDC88B-210ENST00000494566 PDE6HQ13956 83 aa12.74□□□□□ -0.37
CCDC88B-210ENST00000494566 FAM110DQ8TAY7 271 aaPredicted RBP12.74□□□□□ -0.37
CCDC88B-210ENST00000494566 ZNF48Q96MX3 618 aaPredicted RBP12.74□□□□□ -0.37
CCDC88B-210ENST00000494566 A1L4Q6 167 aa12.74□□□□□ -0.37
CCDC88B-210ENST00000494566 HBDP02042 147 aa12.74□□□□□ -0.37
CCDC88B-210ENST00000494566 TRGV3P03979 118 aa12.74□□□□□ -0.37
CCDC88B-210ENST00000494566 PEF1Q9UBV8 284 aaKnown RBP12.74□□□□□ -0.37
CCDC88B-210ENST00000494566 NOTCH3Q9UM47 2321 aa12.73□□□□□ -0.37
CCDC88B-210ENST00000494566 TRBV6-1A0A0K0K1D8 114 aa12.73□□□□□ -0.37
CCDC88B-210ENST00000494566 MS4A6AQ9H2W1 248 aa12.73□□□□□ -0.37
CCDC88B-210ENST00000494566 FAM208BQ5VWN6 2430 aa12.73□□□□□ -0.37
CCDC88B-210ENST00000494566 TRAV40A0A0B4J280 105 aa12.73□□□□□ -0.37
CCDC88B-210ENST00000494566 LY6EQ16553 131 aa12.73□□□□□ -0.37
CCDC88B-210ENST00000494566 IGHV4-61A0A0C4DH41 118 aa12.72□□□□□ -0.37
CCDC88B-210ENST00000494566 COTL1Q14019 142 aa12.72□□□□□ -0.37
CCDC88B-210ENST00000494566 ZFAND3Q9H8U3 227 aa12.72□□□□□ -0.37
CCDC88B-210ENST00000494566 TMEM160Q9NX00 188 aa12.72□□□□□ -0.37
CCDC88B-210ENST00000494566 GOSR1O95249 250 aa12.72□□□□□ -0.37
CCDC88B-210ENST00000494566 FCER1GP30273 86 aa12.72□□□□□ -0.37
CCDC88B-210ENST00000494566 FOXC2Q99958 501 aa12.72□□□□□ -0.37
CCDC88B-210ENST00000494566 DOPEY1Q5JWR5 2465 aa12.71□□□□□ -0.37
CCDC88B-210ENST00000494566 A0A0G2JLM5 398 aa12.71□□□□□ -0.37
CCDC88B-210ENST00000494566 SMAD7O15105 426 aaKnown RBP12.71□□□□□ -0.37
CCDC88B-210ENST00000494566 S100A7AQ86SG5 101 aa12.71□□□□□ -0.37
CCDC88B-210ENST00000494566 CLPSL1A2RUU4 121 aa12.71□□□□□ -0.38
CCDC88B-210ENST00000494566 BUB3O43684 328 aa12.7□□□□□ -0.38
CCDC88B-210ENST00000494566 SAPCD1Q5SSQ6 148 aa12.7□□□□□ -0.38
CCDC88B-210ENST00000494566 C5orf56Q8N8D9 126 aa12.7□□□□□ -0.38
CCDC88B-210ENST00000494566 IGHV4-38-2P0DP08 117 aa12.7□□□□□ -0.38
CCDC88B-210ENST00000494566 TMEM158Q8WZ71 300 aa12.7□□□□□ -0.38
CCDC88B-210ENST00000494566 IGF1P05019 195 aa12.69□□□□□ -0.38
CCDC88B-210ENST00000494566 FXYD2P54710 66 aa12.69□□□□□ -0.38
CCDC88B-210ENST00000494566 RPL24P83731 157 aaKnown RBP12.69□□□□□ -0.38
CCDC88B-210ENST00000494566 SFTA2Q6UW10 78 aa12.69□□□□□ -0.38
CCDC88B-210ENST00000494566 NRGNQ92686 78 aa12.69□□□□□ -0.38
CCDC88B-210ENST00000494566 C11orf21Q9P2W6 132 aa12.69□□□□□ -0.38
CCDC88B-210ENST00000494566 TRBV12-3P01733 135 aa12.68□□□□□ -0.38
CCDC88B-210ENST00000494566 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.68□□□□□ -0.38
CCDC88B-210ENST00000494566 ZNF575Q86XF7 245 aa12.68□□□□□ -0.38
CCDC88B-210ENST00000494566 WFDC12Q8WWY7 111 aa12.68□□□□□ -0.38
CCDC88B-210ENST00000494566 LRRK2Q5S007 2527 aa12.68□□□□□ -0.38
CCDC88B-210ENST00000494566 SCGB2A1O75556 95 aa12.68□□□□□ -0.38
CCDC88B-210ENST00000494566 TNFRSF6BO95407 300 aa12.68□□□□□ -0.38
CCDC88B-210ENST00000494566 SPCS1Q9Y6A9 102 aa12.68□□□□□ -0.38
CCDC88B-210ENST00000494566 FBN2P35556 2912 aa12.67□□□□□ -0.38
CCDC88B-210ENST00000494566 PIFOQ8TCI5 191 aa12.67□□□□□ -0.38
CCDC88B-210ENST00000494566 RNF185Q96GF1 192 aa12.67□□□□□ -0.38
CCDC88B-210ENST00000494566 NHP2Q9NX24 153 aaKnown RBP12.67□□□□□ -0.38
CCDC88B-210ENST00000494566 GLMPQ8WWB7 406 aa12.67□□□□□ -0.38
CCDC88B-210ENST00000494566 MAP1LC3AQ9H492 121 aa12.67□□□□□ -0.38
CCDC88B-210ENST00000494566 IGHV3-11P01762 117 aa12.66□□□□□ -0.38
CCDC88B-210ENST00000494566 ZC2HC1BQ5TFG8 222 aa12.66□□□□□ -0.38
CCDC88B-210ENST00000494566 BOD1L2Q8IYS8 172 aa12.66□□□□□ -0.38
CCDC88B-210ENST00000494566 OR2K2Q8NGT1 345 aa12.66□□□□□ -0.38
CCDC88B-210ENST00000494566 C9orf118A6NHY6 69 aa12.66□□□□□ -0.38
CCDC88B-210ENST00000494566 Q6ZS46 218 aa12.66□□□□□ -0.38
CCDC88B-210ENST00000494566 EEF1AKMT3Q96AZ1 226 aa12.66□□□□□ -0.38
CCDC88B-210ENST00000494566 CCL19Q99731 98 aa12.66□□□□□ -0.38
CCDC88B-210ENST00000494566 IGHV4-30-2A0A087WSY4 118 aa12.65□□□□□ -0.38
CCDC88B-210ENST00000494566 A6NDN8 102 aa12.65□□□□□ -0.38
CCDC88B-210ENST00000494566 ZNF493Q6ZR52 646 aa12.65□□□□□ -0.38
CCDC88B-210ENST00000494566 TRAV41A0A0B4J266 112 aa12.65□□□□□ -0.38
CCDC88B-210ENST00000494566 LGALS9BQ3B8N2 356 aa12.65□□□□□ -0.38
CCDC88B-210ENST00000494566 LGALS9CQ6DKI2 356 aa12.65□□□□□ -0.38
CCDC88B-210ENST00000494566 ANKRD17O75179 2603 aaKnown RBP12.65□□□□□ -0.39
CCDC88B-210ENST00000494566 IGHV1-69DA0A0B4J2H0 117 aa12.65□□□□□ -0.39
CCDC88B-210ENST00000494566 TMEM8BA6NDV4 472 aa12.65□□□□□ -0.39
CCDC88B-210ENST00000494566 IGHV1-69P01742 117 aa12.65□□□□□ -0.39
CCDC88B-210ENST00000494566 ADAMTSL5Q6ZMM2 481 aa12.65□□□□□ -0.39
CCDC88B-210ENST00000494566 HIF1ANQ9NWT6 349 aa12.65□□□□□ -0.39
CCDC88B-210ENST00000494566 ATP5G2Q06055 141 aa12.64□□□□□ -0.39
CCDC88B-210ENST00000494566 PAX8Q06710 450 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms