RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 VSIG2Q96IQ7 327 aa7.98□□□□□ -1.13
COL6A3-213ENST00000493475 CCDC32Q9BV29 185 aa7.98□□□□□ -1.13
COL6A3-213ENST00000493475 OR51M1Q9H341 326 aa7.98□□□□□ -1.13
COL6A3-213ENST00000493475 NDUFA13Q9P0J0 144 aa7.98□□□□□ -1.13
COL6A3-213ENST00000493475 HHLA3Q9XRX5 114 aa7.98□□□□□ -1.13
COL6A3-213ENST00000493475 LY96Q9Y6Y9 160 aa7.98□□□□□ -1.13
COL6A3-213ENST00000493475 TRGV11A0A075B6L2 103 aa7.97□□□□□ -1.13
COL6A3-213ENST00000493475 EPM2AB3EWF7 344 aa7.97□□□□□ -1.13
COL6A3-213ENST00000493475 PYYP10082 97 aa7.97□□□□□ -1.13
COL6A3-213ENST00000493475 TAS2R45P59539 299 aa7.97□□□□□ -1.13
COL6A3-213ENST00000493475 CYCSP99999 105 aaKnown RBP7.97□□□□□ -1.13
COL6A3-213ENST00000493475 RAB32Q13637 225 aa7.97□□□□□ -1.13
COL6A3-213ENST00000493475 FAM74A1Q5RGS3 127 aa7.97□□□□□ -1.13
COL6A3-213ENST00000493475 SH2D6Q7Z4S9 175 aa7.97□□□□□ -1.13
COL6A3-213ENST00000493475 LYPD1Q8N2G4 141 aa7.97□□□□□ -1.13
COL6A3-213ENST00000493475 EXOC3-AS1Q8N2X6 119 aa7.97□□□□□ -1.13
COL6A3-213ENST00000493475 TXNDC17Q9BRA2 123 aa7.97□□□□□ -1.13
COL6A3-213ENST00000493475 SEC22CQ9BRL7 303 aa7.97□□□□□ -1.13
COL6A3-213ENST00000493475 PAXXQ9BUH6 204 aa7.97□□□□□ -1.13
COL6A3-213ENST00000493475 KRTAP1-5Q9BYS1 174 aa7.97□□□□□ -1.13
COL6A3-213ENST00000493475 AGPAT4-IT1Q9H0P7 198 aa7.97□□□□□ -1.13
COL6A3-213ENST00000493475 KLF12Q9Y4X4 402 aa7.97□□□□□ -1.13
COL6A3-213ENST00000493475 IGSF23A1L1A6 192 aa7.96□□□□□ -1.14
COL6A3-213ENST00000493475 RBAKDNA6NC62 111 aa7.96□□□□□ -1.14
COL6A3-213ENST00000493475 C9JCJ5 164 aa7.96□□□□□ -1.14
COL6A3-213ENST00000493475 E5RGE8 158 aa7.96□□□□□ -1.14
COL6A3-213ENST00000493475 OR7C2O60412 319 aa7.96□□□□□ -1.14
COL6A3-213ENST00000493475 NDUFB4O95168 129 aa7.96□□□□□ -1.14
COL6A3-213ENST00000493475 IGHV3-53P01767 116 aa7.96□□□□□ -1.14
COL6A3-213ENST00000493475 PET100P0DJ07 73 aa7.96□□□□□ -1.14
COL6A3-213ENST00000493475 CD300CQ08708 224 aa7.96□□□□□ -1.14
COL6A3-213ENST00000493475 LCE1DQ5T752 114 aa7.96□□□□□ -1.14
COL6A3-213ENST00000493475 FAM159AQ6UWV7 190 aa7.96□□□□□ -1.14
COL6A3-213ENST00000493475 C10orf126Q8N4M7 172 aa7.96□□□□□ -1.14
COL6A3-213ENST00000493475 OR5C1Q8NGR4 320 aa7.96□□□□□ -1.14
COL6A3-213ENST00000493475 FAM19A4Q96LR4 140 aa7.96□□□□□ -1.14
COL6A3-213ENST00000493475 SDHCQ99643 169 aaPredicted RBP7.96□□□□□ -1.14
COL6A3-213ENST00000493475 SPXQ9BT56 116 aa7.96□□□□□ -1.14
COL6A3-213ENST00000493475 KRTAP4-5Q9BYR2 181 aa7.96□□□□□ -1.14
COL6A3-213ENST00000493475 ZNF492Q9P255 531 aa7.96□□□□□ -1.14
COL6A3-213ENST00000493475 IGKV2-40A0A087WW87 121 aaPredicted RBP7.95□□□□□ -1.14
COL6A3-213ENST00000493475 A6NJY4 79 aa7.95□□□□□ -1.14
COL6A3-213ENST00000493475 PLA2G10O15496 165 aa7.95□□□□□ -1.14
COL6A3-213ENST00000493475 IGKV2D-40P01614 121 aaPredicted RBP7.95□□□□□ -1.14
COL6A3-213ENST00000493475 CRYBA4P53673 196 aa7.95□□□□□ -1.14
COL6A3-213ENST00000493475 CMTM2Q8TAZ6 248 aa7.95□□□□□ -1.14
COL6A3-213ENST00000493475 THAP6Q8TBB0 222 aa7.95□□□□□ -1.14
COL6A3-213ENST00000493475 FRZBQ92765 325 aa7.95□□□□□ -1.14
COL6A3-213ENST00000493475 C8orf49Q96NF6 230 aa7.95□□□□□ -1.14
COL6A3-213ENST00000493475 ATP5SQ99766 215 aa7.95□□□□□ -1.14
COL6A3-213ENST00000493475 SLC25A2Q9BXI2 301 aa7.95□□□□□ -1.14
COL6A3-213ENST00000493475 MRPL16Q9NX20 251 aaKnown RBP7.95□□□□□ -1.14
COL6A3-213ENST00000493475 LENEPQ9Y5L5 61 aa7.95□□□□□ -1.14
COL6A3-213ENST00000493475 OR10J4P0C629 311 aa7.94□□□□□ -1.14
COL6A3-213ENST00000493475 KRTAP10-2P60368 255 aa7.94□□□□□ -1.14
COL6A3-213ENST00000493475 UBE2L3P68036 154 aaKnown RBP7.94□□□□□ -1.14
COL6A3-213ENST00000493475 KHDC3LQ587J8 217 aa7.94□□□□□ -1.14
COL6A3-213ENST00000493475 LYPD5Q6UWN5 251 aa7.94□□□□□ -1.14
COL6A3-213ENST00000493475 ZFAND2AQ8N6M9 145 aa7.94□□□□□ -1.14
COL6A3-213ENST00000493475 ENKURQ8TC29 256 aa7.94□□□□□ -1.14
COL6A3-213ENST00000493475 C11orf1Q9H5F2 150 aa7.94□□□□□ -1.14
COL6A3-213ENST00000493475 PSCAO43653 123 aa7.93□□□□□ -1.14
COL6A3-213ENST00000493475 PRAF2O60831 178 aa7.93□□□□□ -1.14
COL6A3-213ENST00000493475 ZNF266Q14584 549 aa7.93□□□□□ -1.14
COL6A3-213ENST00000493475 MIR17HGQ75NE6 70 aa7.93□□□□□ -1.14
COL6A3-213ENST00000493475 IQCF2Q8IXL9 164 aa7.93□□□□□ -1.14
COL6A3-213ENST00000493475 SCGB1C1Q8TD33 95 aa7.93□□□□□ -1.14
COL6A3-213ENST00000493475 S100ZQ8WXG8 99 aa7.93□□□□□ -1.14
COL6A3-213ENST00000493475 NMES1Q9C002 83 aa7.93□□□□□ -1.14
COL6A3-213ENST00000493475 SH3BGRL3Q9H299 93 aa7.93□□□□□ -1.14
COL6A3-213ENST00000493475 MSRB1Q9NZV6 116 aa7.93□□□□□ -1.14
COL6A3-213ENST00000493475 HSPG2P98160 4391 aa7.92□□□□□ -1.14
COL6A3-213ENST00000493475 RANP62826 216 aaKnown RBP7.92□□□□□ -1.14
COL6A3-213ENST00000493475 FHL2Q14192 279 aa7.92□□□□□ -1.14
COL6A3-213ENST00000493475 GCSAMLQ5JQS6 135 aa7.92□□□□□ -1.14
COL6A3-213ENST00000493475 LINC00299Q6ZSB3 139 aa7.92□□□□□ -1.14
COL6A3-213ENST00000493475 OR10G4Q8NGN3 311 aa7.92□□□□□ -1.14
COL6A3-213ENST00000493475 TMED6Q8WW62 240 aa7.92□□□□□ -1.14
COL6A3-213ENST00000493475 WDR61Q9GZS3 305 aaKnown RBP7.92□□□□□ -1.14
COL6A3-213ENST00000493475 TP53TG3Q9ULZ0 132 aa7.92□□□□□ -1.14
COL6A3-213ENST00000493475 A6NHS1 94 aa7.91□□□□□ -1.14
COL6A3-213ENST00000493475 K7EQD1 137 aa7.91□□□□□ -1.14
COL6A3-213ENST00000493475 GYPEP15421 78 aa7.91□□□□□ -1.14
COL6A3-213ENST00000493475 PPT1P50897 306 aa7.91□□□□□ -1.14
COL6A3-213ENST00000493475 NHLH2Q02577 135 aa7.91□□□□□ -1.14
COL6A3-213ENST00000493475 IL15RAQ13261 267 aa7.91□□□□□ -1.14
COL6A3-213ENST00000493475 TMEM183BQ1AE95 376 aa7.91□□□□□ -1.14
COL6A3-213ENST00000493475 LRRC37A5PQ49AS3 106 aa7.91□□□□□ -1.14
COL6A3-213ENST00000493475 MUC21Q5SSG8 566 aa7.91□□□□□ -1.14
COL6A3-213ENST00000493475 Q6AWC8 147 aa7.91□□□□□ -1.14
COL6A3-213ENST00000493475 Q6ZRN7 208 aaPredicted RBP7.91□□□□□ -1.14
COL6A3-213ENST00000493475 TMEM183AQ8IXX5 376 aa7.91□□□□□ -1.14
COL6A3-213ENST00000493475 OR4C5Q8NGB2 326 aa7.91□□□□□ -1.14
COL6A3-213ENST00000493475 Q8TAT8 98 aa7.91□□□□□ -1.14
COL6A3-213ENST00000493475 RASL10AQ92737 203 aa7.91□□□□□ -1.14
COL6A3-213ENST00000493475 FXYD5Q96DB9 178 aa7.91□□□□□ -1.14
COL6A3-213ENST00000493475 KCNS1Q96KK3 526 aa7.91□□□□□ -1.14
COL6A3-213ENST00000493475 FAM167A-AS1Q96KT0 104 aa7.91□□□□□ -1.14
COL6A3-213ENST00000493475 NDFIP1Q9BT67 221 aa7.91□□□□□ -1.14
COL6A3-213ENST00000493475 BATF3Q9NR55 127 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms