RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 AMN1Q8IY45 258 aa16.03■□□□□ 0.16
CCDC88B-208ENST00000492980 CNFNQ9BYD5 112 aa16.03■□□□□ 0.16
CCDC88B-208ENST00000492980 C2orf70A6NJV1 201 aa16.02■□□□□ 0.16
CCDC88B-208ENST00000492980 TWIST1Q15672 202 aa16.02■□□□□ 0.16
CCDC88B-208ENST00000492980 C20orf144Q9BQM9 153 aa16.02■□□□□ 0.16
CCDC88B-208ENST00000492980 SMPXQ9UHP9 88 aa16.02■□□□□ 0.16
CCDC88B-208ENST00000492980 PAM16Q9Y3D7 125 aa16.02■□□□□ 0.16
CCDC88B-208ENST00000492980 U3KQK5 164 aa16.02■□□□□ 0.16
CCDC88B-208ENST00000492980 K7EMT4 169 aa16.01■□□□□ 0.15
CCDC88B-208ENST00000492980 ABCA12Q86UK0 2595 aa16.01■□□□□ 0.15
CCDC88B-208ENST00000492980 CSN3P07498 182 aa16.01■□□□□ 0.15
CCDC88B-208ENST00000492980 EDN2P20800 178 aa16.01■□□□□ 0.15
CCDC88B-208ENST00000492980 RPL11P62913 178 aaKnown RBP16.01■□□□□ 0.15
CCDC88B-208ENST00000492980 FAM106AQ4KMX7 169 aa16.01■□□□□ 0.15
CCDC88B-208ENST00000492980 LENEPQ9Y5L5 61 aa16.01■□□□□ 0.15
CCDC88B-208ENST00000492980 NAV2Q8IVL1 2488 aa16.01■□□□□ 0.15
CCDC88B-208ENST00000492980 D6R8Y8 96 aa16■□□□□ 0.15
CCDC88B-208ENST00000492980 OVOL1O14753 267 aa16■□□□□ 0.15
CCDC88B-208ENST00000492980 FOXE3Q13461 319 aa16■□□□□ 0.15
CCDC88B-208ENST00000492980 ZNF702PQ9H963 129 aa16■□□□□ 0.15
CCDC88B-208ENST00000492980 HOXA3O43365 443 aaPredicted RBP16■□□□□ 0.15
CCDC88B-208ENST00000492980 BTF3P20290 206 aaKnown RBP16■□□□□ 0.15
CCDC88B-208ENST00000492980 MRPL51Q4U2R6 128 aaKnown RBP16■□□□□ 0.15
CCDC88B-208ENST00000492980 RPLP1P05386 114 aaKnown RBP15.99■□□□□ 0.15
CCDC88B-208ENST00000492980 PRR9Q5T870 116 aa15.99■□□□□ 0.15
CCDC88B-208ENST00000492980 LINC00477Q96M19 166 aa15.99■□□□□ 0.15
CCDC88B-208ENST00000492980 CYB5R2Q6BCY4 276 aa15.98■□□□□ 0.15
CCDC88B-208ENST00000492980 PRSS57Q6UWY2 283 aa15.98■□□□□ 0.15
CCDC88B-208ENST00000492980 MSRB1Q9NZV6 116 aa15.98■□□□□ 0.15
CCDC88B-208ENST00000492980 RAB4AP20338 218 aa15.98■□□□□ 0.15
CCDC88B-208ENST00000492980 DEFB1P60022 68 aa15.98■□□□□ 0.15
CCDC88B-208ENST00000492980 Q6ZQT7 251 aa15.98■□□□□ 0.15
CCDC88B-208ENST00000492980 ORMDL3Q8N138 153 aa15.98■□□□□ 0.15
CCDC88B-208ENST00000492980 OR10J6PQ8NGY7 276 aa15.98■□□□□ 0.15
CCDC88B-208ENST00000492980 TMEM191AQ9H0A3 160 aa15.98■□□□□ 0.15
CCDC88B-208ENST00000492980 IGKV3-7A0A075B6H7 116 aa15.97■□□□□ 0.15
CCDC88B-208ENST00000492980 PRELID3AQ96N28 172 aa15.97■□□□□ 0.15
CCDC88B-208ENST00000492980 SELENOKQ9Y6D0 94 aa15.97■□□□□ 0.15
CCDC88B-208ENST00000492980 LINC00173Q6ZV60 143 aa15.97■□□□□ 0.15
CCDC88B-208ENST00000492980 UFC1Q9Y3C8 167 aa15.97■□□□□ 0.15
CCDC88B-208ENST00000492980 LEPROTL1O95214 131 aa15.96■□□□□ 0.15
CCDC88B-208ENST00000492980 SPATA12Q7Z6I5 190 aa15.96■□□□□ 0.15
CCDC88B-208ENST00000492980 ZFAND2AQ8N6M9 145 aa15.96■□□□□ 0.15
CCDC88B-208ENST00000492980 MYOZ3Q8TDC0 251 aa15.96■□□□□ 0.15
CCDC88B-208ENST00000492980 OR5AL1P0C617 328 aa15.95■□□□□ 0.14
CCDC88B-208ENST00000492980 TMEM70Q9BUB7 260 aa15.95■□□□□ 0.14
CCDC88B-208ENST00000492980 AP5S1Q9NUS5 200 aa15.95■□□□□ 0.14
CCDC88B-208ENST00000492980 PRSS3P2Q8NHM4 247 aa15.95■□□□□ 0.14
CCDC88B-208ENST00000492980 RNF185Q96GF1 192 aa15.95■□□□□ 0.14
CCDC88B-208ENST00000492980 ELANEP08246 267 aa15.94■□□□□ 0.14
CCDC88B-208ENST00000492980 SRD5A1P18405 259 aa15.94■□□□□ 0.14
CCDC88B-208ENST00000492980 FA2HQ7L5A8 372 aa15.94■□□□□ 0.14
CCDC88B-208ENST00000492980 OR8A1Q8NGG7 326 aa15.94■□□□□ 0.14
CCDC88B-208ENST00000492980 FAM19A4Q96LR4 140 aa15.94■□□□□ 0.14
CCDC88B-208ENST00000492980 APCP25054 2843 aa15.94■□□□□ 0.14
CCDC88B-208ENST00000492980 F6UB75 175 aa15.94■□□□□ 0.14
CCDC88B-208ENST00000492980 IFI27P40305 119 aaPredicted RBP15.94■□□□□ 0.14
CCDC88B-208ENST00000492980 SPATA45Q537H7 98 aa15.94■□□□□ 0.14
CCDC88B-208ENST00000492980 MIEN1Q9BRT3 115 aa15.94■□□□□ 0.14
CCDC88B-208ENST00000492980 SIGLEC8Q9NYZ4 499 aa15.94■□□□□ 0.14
CCDC88B-208ENST00000492980 SMKR1H3BMG3 65 aa15.93■□□□□ 0.14
CCDC88B-208ENST00000492980 CRXO43186 299 aaPredicted RBP15.93■□□□□ 0.14
CCDC88B-208ENST00000492980 LGALS1P09382 135 aaKnown RBP15.93■□□□□ 0.14
CCDC88B-208ENST00000492980 CKS2P33552 79 aa15.93■□□□□ 0.14
CCDC88B-208ENST00000492980 ATOH7Q8N100 152 aa15.93■□□□□ 0.14
CCDC88B-208ENST00000492980 CREBBPQ92793 2442 aa15.92■□□□□ 0.14
CCDC88B-208ENST00000492980 LOC389332A0A1B0GUA5 103 aa15.92■□□□□ 0.14
CCDC88B-208ENST00000492980 SYS1-DBNDD2H3BUS1 97 aa15.92■□□□□ 0.14
CCDC88B-208ENST00000492980 J3KRW8 73 aa15.92■□□□□ 0.14
CCDC88B-208ENST00000492980 OR10AG1Q8NH19 301 aa15.92■□□□□ 0.14
CCDC88B-208ENST00000492980 DCANP1Q8TF63 244 aa15.92■□□□□ 0.14
CCDC88B-208ENST00000492980 NCR2O95944 276 aa15.91■□□□□ 0.14
CCDC88B-208ENST00000492980 NPYP01303 97 aa15.91■□□□□ 0.14
CCDC88B-208ENST00000492980 RNF152Q8N8N0 203 aa15.91■□□□□ 0.14
CCDC88B-208ENST00000492980 MXRA5Q9NR99 2828 aa15.91■□□□□ 0.14
CCDC88B-208ENST00000492980 SNAI2O43623 268 aa15.9■□□□□ 0.14
CCDC88B-208ENST00000492980 SAMD13Q5VXD3 122 aa15.9■□□□□ 0.14
CCDC88B-208ENST00000492980 HIST2H2BCQ6DN03 193 aa15.9■□□□□ 0.14
CCDC88B-208ENST00000492980 UBE2E2Q96LR5 201 aa15.9■□□□□ 0.14
CCDC88B-208ENST00000492980 HSPB8Q9UJY1 196 aa15.9■□□□□ 0.14
CCDC88B-208ENST00000492980 IGHV4OR15-8A0A075B7B6 117 aa15.89■□□□□ 0.13
CCDC88B-208ENST00000492980 A0A087WW49 117 aa15.89■□□□□ 0.13
CCDC88B-208ENST00000492980 TRAV21A0A0B4J279 112 aa15.89■□□□□ 0.13
CCDC88B-208ENST00000492980 MAJINQ3KP22 176 aa15.89■□□□□ 0.13
CCDC88B-208ENST00000492980 ZNF705AQ6ZN79 300 aaPredicted RBP15.89■□□□□ 0.13
CCDC88B-208ENST00000492980 APRG1Q8IVJ8 170 aa15.89■□□□□ 0.13
CCDC88B-208ENST00000492980 WFDC11Q8NEX6 87 aa15.89■□□□□ 0.13
CCDC88B-208ENST00000492980 DUX5Q96PT3 197 aa15.89■□□□□ 0.13
CCDC88B-208ENST00000492980 TEX15Q9BXT5 2789 aa15.89■□□□□ 0.13
CCDC88B-208ENST00000492980 TRBV7-9A0A0J9YWB2 115 aa15.89■□□□□ 0.13
CCDC88B-208ENST00000492980 ID1P41134 155 aa15.89■□□□□ 0.13
CCDC88B-208ENST00000492980 Q8N2B8 174 aa15.89■□□□□ 0.13
CCDC88B-208ENST00000492980 IGHV4-4A0A075B6R2 117 aa15.88■□□□□ 0.13
CCDC88B-208ENST00000492980 EREGO14944 169 aa15.88■□□□□ 0.13
CCDC88B-208ENST00000492980 PPBPP02775 128 aa15.88■□□□□ 0.13
CCDC88B-208ENST00000492980 WFDC3Q8IUB2 231 aa15.88■□□□□ 0.13
CCDC88B-208ENST00000492980 NBPF19A0A087WUL8 3843 aa15.88■□□□□ 0.13
CCDC88B-208ENST00000492980 TENM4Q6N022 2769 aa15.88■□□□□ 0.13
CCDC88B-208ENST00000492980 A0A096LNJ9 63 aa15.88■□□□□ 0.13
CCDC88B-208ENST00000492980 SYNJ2BPP57105 145 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms