RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 ZGRF1Q86YA3 2104 aa0.14□□□□□ -2.39
SCN1A-206ENST00000491429 FAM208BQ5VWN6 2430 aa0.14□□□□□ -2.39
SCN1A-206ENST00000491429 SPG11Q96JI7 2443 aa0.14□□□□□ -2.39
SCN1A-206ENST00000491429 LRRK2Q5S007 2527 aa0.14□□□□□ -2.39
SCN1A-206ENST00000491429 DSPPQ9NZW4 1301 aa0.13□□□□□ -2.39
SCN1A-206ENST00000491429 KIAA1107Q9UPP5 1409 aa0.13□□□□□ -2.39
SCN1A-206ENST00000491429 MAP1BP46821 2468 aaKnown RBP0.13□□□□□ -2.39
SCN1A-206ENST00000491429 NBEAL2Q6ZNJ1 2754 aa0.13□□□□□ -2.39
SCN1A-206ENST00000491429 DMBT1Q9UGM3 2413 aaPredicted RBP0.13□□□□□ -2.39
SCN1A-206ENST00000491429 TRDV1A0A1B0GX56 115 aa0.13□□□□□ -2.39
SCN1A-206ENST00000491429 PRORSD1PA6NEY8 169 aa0.13□□□□□ -2.39
SCN1A-206ENST00000491429 GABARAPH6UMI1 98 aa0.13□□□□□ -2.39
SCN1A-206ENST00000491429 IGHV3-30P01768 117 aa0.13□□□□□ -2.39
SCN1A-206ENST00000491429 IGHV3-30-5P0DP03 117 aa0.13□□□□□ -2.39
SCN1A-206ENST00000491429 SERPINB1P30740 379 aa0.13□□□□□ -2.39
SCN1A-206ENST00000491429 NDUFA6P56556 154 aa0.13□□□□□ -2.39
SCN1A-206ENST00000491429 GLYATL3Q5SZD4 288 aa0.13□□□□□ -2.39
SCN1A-206ENST00000491429 XAF1Q6GPH4 301 aa0.13□□□□□ -2.39
SCN1A-206ENST00000491429 C3orf33Q6P1S2 294 aa0.13□□□□□ -2.39
SCN1A-206ENST00000491429 CSAG1Q6PB30 78 aa0.13□□□□□ -2.39
SCN1A-206ENST00000491429 SPINK6Q6UWN8 80 aa0.13□□□□□ -2.39
SCN1A-206ENST00000491429 FKBP11Q9NYL4 201 aa0.13□□□□□ -2.39
SCN1A-206ENST00000491429 EIF3AQ14152 1382 aaKnown RBP0.13□□□□□ -2.39
SCN1A-206ENST00000491429 GCN1Q92616 2671 aaKnown RBP0.13□□□□□ -2.39
SCN1A-206ENST00000491429 MYO9AB2RTY4 2548 aa0.13□□□□□ -2.39
SCN1A-206ENST00000491429 TECPR2O15040 1411 aa0.13□□□□□ -2.39
SCN1A-206ENST00000491429 SYNE1Q8NF91 8797 aaKnown RBP0.12□□□□□ -2.39
SCN1A-206ENST00000491429 CSMD1Q96PZ7 3565 aa0.12□□□□□ -2.39
SCN1A-206ENST00000491429 LOC285556D6RIA3 1793 aa0.12□□□□□ -2.39
SCN1A-206ENST00000491429 A0A1W2PRS3 328 aa0.12□□□□□ -2.39
SCN1A-206ENST00000491429 BBIP1A8MTZ0 92 aa0.12□□□□□ -2.39
SCN1A-206ENST00000491429 TMEM238C9JI98 176 aa0.12□□□□□ -2.39
SCN1A-206ENST00000491429 H7BYZ3 331 aa0.12□□□□□ -2.39
SCN1A-206ENST00000491429 TPT1P13693 172 aaKnown RBP0.12□□□□□ -2.39
SCN1A-206ENST00000491429 G0S2P27469 103 aa0.12□□□□□ -2.39
SCN1A-206ENST00000491429 SDC2P34741 201 aa0.12□□□□□ -2.39
SCN1A-206ENST00000491429 CRYBA4P53673 196 aa0.12□□□□□ -2.39
SCN1A-206ENST00000491429 ZNF56Q15929 161 aa0.12□□□□□ -2.39
SCN1A-206ENST00000491429 DCUN1D2Q6PH85 259 aa0.12□□□□□ -2.39
SCN1A-206ENST00000491429 ISOC1Q96CN7 298 aa0.12□□□□□ -2.39
SCN1A-206ENST00000491429 LINC00208Q96KT6 92 aa0.12□□□□□ -2.39
SCN1A-206ENST00000491429 PRELID3AQ96N28 172 aa0.12□□□□□ -2.39
SCN1A-206ENST00000491429 CIB3Q96Q77 187 aaPredicted RBP0.12□□□□□ -2.39
SCN1A-206ENST00000491429 USP9YO00507 2555 aaPredicted RBP0.12□□□□□ -2.39
SCN1A-206ENST00000491429 ZDBF2Q9HCK1 2354 aa0.12□□□□□ -2.39
SCN1A-206ENST00000491429 IGSF10Q6WRI0 2623 aa0.12□□□□□ -2.39
SCN1A-206ENST00000491429 TRAPPC8Q9Y2L5 1435 aa0.12□□□□□ -2.39
SCN1A-206ENST00000491429 PIK3C2AO00443 1686 aa0.11□□□□□ -2.39
SCN1A-206ENST00000491429 PTPRDP23468 1912 aa0.11□□□□□ -2.39
SCN1A-206ENST00000491429 MAP1LC3B2A6NCE7 125 aa0.11□□□□□ -2.39
SCN1A-206ENST00000491429 A6NN06 94 aa0.11□□□□□ -2.39
SCN1A-206ENST00000491429 GYPBP06028 91 aa0.11□□□□□ -2.39
SCN1A-206ENST00000491429 S100A11P31949 105 aa0.11□□□□□ -2.39
SCN1A-206ENST00000491429 MAXP61244 160 aa0.11□□□□□ -2.39
SCN1A-206ENST00000491429 C3orf62Q6ZUJ4 267 aa0.11□□□□□ -2.39
SCN1A-206ENST00000491429 TEX29Q8N6K0 151 aa0.11□□□□□ -2.39
SCN1A-206ENST00000491429 TMEM229BQ8NBD8 167 aa0.11□□□□□ -2.39
SCN1A-206ENST00000491429 TNCP24821 2201 aa0.11□□□□□ -2.39
SCN1A-206ENST00000491429 C2CD3Q4AC94 2353 aa0.11□□□□□ -2.39
SCN1A-206ENST00000491429 ZFHX4Q86UP3 3567 aa0.11□□□□□ -2.39
SCN1A-206ENST00000491429 CACNA1EQ15878 2313 aa0.1□□□□□ -2.39
SCN1A-206ENST00000491429 LAMA3Q16787 3333 aa0.1□□□□□ -2.39
SCN1A-206ENST00000491429 ITPR1Q14643 2758 aa0.1□□□□□ -2.39
SCN1A-206ENST00000491429 A0A1W2PPB8 328 aa0.1□□□□□ -2.39
SCN1A-206ENST00000491429 ARL5CA6NH57 179 aa0.1□□□□□ -2.39
SCN1A-206ENST00000491429 KIR3DP1A8MWS1 328 aa0.1□□□□□ -2.39
SCN1A-206ENST00000491429 BCL2P10415 239 aa0.1□□□□□ -2.39
SCN1A-206ENST00000491429 EVI2AP22794 236 aa0.1□□□□□ -2.39
SCN1A-206ENST00000491429 SPINK13Q1W4C9 94 aa0.1□□□□□ -2.39
SCN1A-206ENST00000491429 TRIQKQ629K1 86 aa0.1□□□□□ -2.39
SCN1A-206ENST00000491429 C10orf99Q6UWK7 81 aa0.1□□□□□ -2.39
SCN1A-206ENST00000491429 IZUMO2Q6UXV1 221 aa0.1□□□□□ -2.39
SCN1A-206ENST00000491429 LINC00305Q7Z4B0 112 aa0.1□□□□□ -2.39
SCN1A-206ENST00000491429 TCTEX1D1Q8N7M0 179 aa0.1□□□□□ -2.39
SCN1A-206ENST00000491429 NABP2Q9BQ15 211 aa0.1□□□□□ -2.39
SCN1A-206ENST00000491429 KMT2AQ03164 3969 aa0.1□□□□□ -2.39
SCN1A-206ENST00000491429 MGAM2Q2M2H8 2515 aa0.1□□□□□ -2.39
SCN1A-206ENST00000491429 COL12A1Q99715 3063 aa0.1□□□□□ -2.39
SCN1A-206ENST00000491429 TNRC18O15417 2968 aaPredicted RBP0.09□□□□□ -2.39
SCN1A-206ENST00000491429 LOC101927531A0A1B0GV80 90 aa0.09□□□□□ -2.4
SCN1A-206ENST00000491429 PPP5D1E7EU14 171 aa0.09□□□□□ -2.4
SCN1A-206ENST00000491429 CD3DP04234 171 aa0.09□□□□□ -2.4
SCN1A-206ENST00000491429 SAA1P0DJI8 122 aaPredicted RBP0.09□□□□□ -2.4
SCN1A-206ENST00000491429 FXYD3Q14802 87 aa0.09□□□□□ -2.4
SCN1A-206ENST00000491429 STX12Q86Y82 276 aa0.09□□□□□ -2.4
SCN1A-206ENST00000491429 SREK1IP1Q8N9Q2 155 aaPredicted RBP0.09□□□□□ -2.4
SCN1A-206ENST00000491429 BOLA2Q9H3K6 86 aa0.09□□□□□ -2.4
SCN1A-206ENST00000491429 MRPL36Q9P0J6 103 aaKnown RBP0.09□□□□□ -2.4
SCN1A-206ENST00000491429 COMMD3Q9UBI1 195 aa0.09□□□□□ -2.4
SCN1A-206ENST00000491429 LAMTOR2Q9Y2Q5 125 aa0.09□□□□□ -2.4
SCN1A-206ENST00000491429 FGD6Q6ZV73 1430 aa0.09□□□□□ -2.4
SCN1A-206ENST00000491429 YTHDC2Q9H6S0 1430 aaKnown RBP0.09□□□□□ -2.4
SCN1A-206ENST00000491429 FLNBO75369 2602 aaKnown RBP0.09□□□□□ -2.4
SCN1A-206ENST00000491429 TENM2Q9NT68 2774 aa0.09□□□□□ -2.4
SCN1A-206ENST00000491429 COL7A1Q02388 2944 aa0.09□□□□□ -2.4
SCN1A-206ENST00000491429 DLC1Q96QB1 1528 aa0.08□□□□□ -2.4
SCN1A-206ENST00000491429 SRCAPQ6ZRS2 3230 aa0.08□□□□□ -2.4
SCN1A-206ENST00000491429 MXRA5Q9NR99 2828 aa0.08□□□□□ -2.4
SCN1A-206ENST00000491429 TRBV27A0A0K0K1C4 114 aa0.08□□□□□ -2.4
SCN1A-206ENST00000491429 LOC107986453A0A1B0GWG9 222 aa0.08□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms